Adding a new module takes a full clean and recompile before working

[GiudGiud]

Bug Description

If you turn on an extra module in the makefile of an app, it takes a git clean -Xfd and a recompile to get its objects.
The new module will get re-compiled but wont be linked properly probably.

I think we are missing some makefile logic to get this right, and be able to

• add a module in the Makefile
• recompile
• be done

possbily all we need to do is modify a rule to react to changes in a specific section of the makefile, or move that list of modules somewhere else

Steps to Reproduce

Create an app, compile with 0 modules, add PHASE_FIELD, compile, try to use a phase field object and get a registration error

Impact

Common issue for users

[Optional] Diagnostics

No response