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environment.yml
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environment.yml
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name: maize_gxe_prediction
channels:
- anaconda
- conda-forge
- bioconda
- defaults
- nvidia
- pytorch
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- asttokens=2.0.5=pyhd3eb1b0_0
- backcall=0.2.0=pyhd3eb1b0_0
- brotli=1.0.9=h166bdaf_8
- brotli-bin=1.0.9=h166bdaf_8
- bzip2=1.0.8=h7f98852_4
- ca-certificates=2023.7.22=hbcca054_0
- certifi=2023.7.22=pyhd8ed1ab_0
- charset-normalizer=3.1.0=pyhd8ed1ab_0
- comm=0.1.2=py38h06a4308_0
- cycler=0.11.0=pyhd8ed1ab_0
- debugpy=1.5.1=py38h295c915_0
- decorator=5.1.1=pyhd3eb1b0_0
- entrypoints=0.4=py38h06a4308_0
- executing=0.8.3=pyhd3eb1b0_0
- freetype=2.12.1=hca18f0e_1
- icu=67.1=he1b5a44_0
- idna=3.4=pyhd8ed1ab_0
- ipykernel=6.19.2=py38hb070fc8_0
- ipython=8.8.0=py38h06a4308_0
- jedi=0.18.1=py38h06a4308_1
- jinja2=3.1.2=py38h06a4308_0
- jupyter_client=7.4.8=py38h06a4308_0
- jupyter_core=5.1.1=py38h06a4308_0
- kiwisolver=1.4.4=py38h43d8883_1
- ld_impl_linux-64=2.40=h41732ed_0
- libblas=3.9.0=16_linux64_openblas
- libbrotlicommon=1.0.9=h166bdaf_8
- libbrotlidec=1.0.9=h166bdaf_8
- libbrotlienc=1.0.9=h166bdaf_8
- libcblas=3.9.0=16_linux64_openblas
- libffi=3.4.2=h7f98852_5
- libgcc-ng=12.2.0=h65d4601_19
- libgfortran-ng=12.2.0=h69a702a_19
- libgfortran5=12.2.0=h337968e_19
- libgomp=12.2.0=h65d4601_19
- liblapack=3.9.0=16_linux64_openblas
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.21=pthreads_h78a6416_3
- libpng=1.6.39=h753d276_0
- libsodium=1.0.18=h7b6447c_0
- libsqlite=3.40.0=h753d276_0
- libstdcxx-ng=12.2.0=h46fd767_19
- libuuid=2.32.1=h7f98852_1000
- libzlib=1.2.13=h166bdaf_4
- matplotlib=3.2.2=1
- matplotlib-base=3.2.2=py38h5d868c9_1
- matplotlib-inline=0.1.6=py38h06a4308_0
- ncurses=6.3=h27087fc_1
- nest-asyncio=1.5.6=py38h06a4308_0
- openssl=3.1.1=hd590300_1
- parso=0.8.3=pyhd3eb1b0_0
- patsy=0.5.3=pyhd8ed1ab_0
- pexpect=4.8.0=pyhd3eb1b0_3
- pickleshare=0.7.5=pyhd3eb1b0_1003
- pip=23.0.1=pyhd8ed1ab_0
- platformdirs=2.5.2=py38h06a4308_0
- pooch=1.7.0=pyha770c72_3
- prompt-toolkit=3.0.36=py38h06a4308_0
- psutil=5.9.0=py38h5eee18b_0
- ptyprocess=0.7.0=pyhd3eb1b0_2
- pure_eval=0.2.2=pyhd3eb1b0_0
- pygments=2.11.2=pyhd3eb1b0_0
- pyparsing=3.0.9=pyhd8ed1ab_0
- pysocks=1.7.1=pyha2e5f31_6
- python=3.8.16=he550d4f_1_cpython
- python-dateutil=2.8.2=pyhd3eb1b0_0
- python-tzdata=2023.3=pyhd8ed1ab_0
- python_abi=3.8=3_cp38
- pyzmq=23.2.0=py38h6a678d5_0
- readline=8.1.2=h0f457ee_0
- requests=2.31.0=pyhd8ed1ab_0
- scipy=1.10.1=py38h59b608b_3
- seaborn=0.12.2=hd8ed1ab_0
- seaborn-base=0.12.2=pyhd8ed1ab_0
- setuptools=67.4.0=pyhd8ed1ab_0
- six=1.16.0=pyhd3eb1b0_1
- stack_data=0.2.0=pyhd3eb1b0_0
- statsmodels=0.14.0=py38h31356c5_1
- tabulate=0.9.0=pyhd8ed1ab_1
- tk=8.6.12=h27826a3_0
- tornado=6.2=py38h5eee18b_0
- traitlets=5.7.1=py38h06a4308_0
- typing_extensions=4.6.0=pyha770c72_0
- urllib3=2.0.2=pyhd8ed1ab_0
- wcwidth=0.2.5=pyhd3eb1b0_0
- wheel=0.38.4=pyhd8ed1ab_0
- xz=5.2.6=h166bdaf_0
- zeromq=4.3.4=h2531618_0
- pip:
- alembic==1.9.4
- cmaes==0.9.1
- colorlog==6.7.0
- greenlet==2.0.2
- importlib-metadata==6.0.0
- importlib-resources==5.12.0
- joblib==1.2.0
- lightgbm==3.3.5
- mako==1.2.4
- markupsafe==2.1.2
- numpy==1.24.2
- optuna==3.1.0
- packaging==23.0
- pandas==1.5.3
- pyarrow==11.0.0
- pytz==2022.7.1
- pyyaml==6.0
- scikit-learn==1.2.1
- sqlalchemy==2.0.4
- threadpoolctl==3.1.0
- tqdm==4.64.1
- typing-extensions==4.5.0
- zipp==3.15.0
prefix: /home/igorf/.conda/envs/maize_gxe_prediction