From c16aceebdf8a491a2230f30a0c8a1c2646e2f819 Mon Sep 17 00:00:00 2001
From: jrobinso <933148+jrobinso@users.noreply.github.com>
Date: Mon, 8 Jul 2024 20:50:36 -0700
Subject: [PATCH] Add example session for base modifications

---
 resources/sessions/6mA_pacbio.json      | 38 +++++++++++++++++++++++++
 resources/sessions/sessionRegistry.json |  8 ++++++
 2 files changed, 46 insertions(+)
 create mode 100644 resources/sessions/6mA_pacbio.json

diff --git a/resources/sessions/6mA_pacbio.json b/resources/sessions/6mA_pacbio.json
new file mode 100644
index 0000000..021d820
--- /dev/null
+++ b/resources/sessions/6mA_pacbio.json
@@ -0,0 +1,38 @@
+{
+  "genome": "hg38",
+  "locus": "chr11:119094729-119094804",
+  "tracks": [
+    {
+      "type": "alignment",
+      "format": "bam",
+      "url":      "https://igv-genepattern-org.s3.amazonaws.com/test/baseMods/6mA/pacbio/HG002_chr11_119076212_119102218.bam",
+      "indexURL": "https://igv-genepattern-org.s3.amazonaws.com/test/baseMods/6mA/pacbio/HG002_chr11_119076212_119102218.bam.bai",
+      "height": 300,
+      "name": "Base modifications",
+      "colorBy": "basemod",
+      "groupBy": "strand"
+    },
+    {
+      "type": "alignment",
+      "format": "bam",
+      "url":      "https://igv-genepattern-org.s3.amazonaws.com/test/baseMods/6mA/pacbio/HG002_chr11_119076212_119102218.bam",
+      "indexURL": "https://igv-genepattern-org.s3.amazonaws.com/test/baseMods/6mA/pacbio/HG002_chr11_119076212_119102218.bam.bai",
+      "height": 300,
+      "name": "Base modifications - 2 Color",
+      "colorBy": "basemod2",
+      "groupBy": "strand",
+      "baseModificationThreshold": 0
+    },
+    {
+      "type": "alignment",
+      "format": "bam",
+      "url":      "https://igv-genepattern-org.s3.amazonaws.com/test/baseMods/6mA/pacbio/HG002_chr11_119076212_119102218.bam",
+      "indexURL": "https://igv-genepattern-org.s3.amazonaws.com/test/baseMods/6mA/pacbio/HG002_chr11_119076212_119102218.bam.bai",
+      "height": 300,
+      "name": "5mC modifications - 2 Color",
+      "colorBy": "basemod2:m",
+      "groupBy": "strand",
+      "baseModificationThreshold": 0
+    }
+  ]
+}
\ No newline at end of file
diff --git a/resources/sessions/sessionRegistry.json b/resources/sessions/sessionRegistry.json
index e508fbb..6b30f98 100644
--- a/resources/sessions/sessionRegistry.json
+++ b/resources/sessions/sessionRegistry.json
@@ -13,6 +13,14 @@
     "description": "1000 genomes variants",
     "url": "resources/sessions/1kg-variants-session.json"
   },
+  {
+    "name": "Examples - Base Modifications"
+  },
+  {
+    "name": "5mC and 6mA Modifications",
+    "description": "5mC and 6mA Modifications",
+    "url": "resources/sessions/6mA_pacbio.json"
+  },
   {
     "name": "Examples - Circular View"
   },