From a5dbf030be332dab37d1cd57176d46b1a56fee9d Mon Sep 17 00:00:00 2001
From: k-dominik <k-dominik@users.noreply.github.com>
Date: Mon, 13 May 2019 14:10:06 +0200
Subject: [PATCH 1/2] travis linting

---
 .travis.yml | 16 ++++++++++++----
 1 file changed, 12 insertions(+), 4 deletions(-)

diff --git a/.travis.yml b/.travis.yml
index 435bb9bac..6f71bab75 100644
--- a/.travis.yml
+++ b/.travis.yml
@@ -15,12 +15,19 @@ cache:
 install:
   - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then brew update; fi
   - if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then sudo apt-get update; fi
-  - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then export MINICONDA=https://repo.continuum.io/miniconda/Miniconda3-latest-MacOSX-x86_64.sh; fi
-  - if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then export MINICONDA=https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh; fi
+  - |
+    if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then
+      export MINICONDA=https://repo.continuum.io/miniconda/Miniconda3-latest-MacOSX-x86_64.sh;
+    fi
+  - |
+    if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then
+      export MINICONDA=https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh;
+    fi
   - echo $CONDA_ROOT
   - echo $TEST_ENV
   - echo $TEST_ENV_PREFIX
-  - if [[ ! -d ${CONDA_ROOT} ]]; then
+  - |
+    if [[ ! -d ${CONDA_ROOT} ]]; then
       echo "Installing Miniconda...";
       wget $MINICONDA -O miniconda.sh &&
       bash miniconda.sh -b -p ${CONDA_ROOT};
@@ -35,7 +42,8 @@ install:
   # Useful for debugging any issues with conda
   # - conda info -a
 
-  - if [[ ! -d $TEST_ENV_PREFIX ]]; then
+  - |
+    if [[ ! -d $TEST_ENV_PREFIX ]]; then
       conda create -q -n $TEST_ENV -c ilastik-forge -c conda-forge ilastik-dependencies-no-solvers flake8 pytest-cov coveralls black;
     else
       conda install -y -n ${TEST_ENV} -c ilastik-forge -c conda-forge ilastik-dependencies-no-solvers flake8 pytest-cov coveralls black;

From f98520df252581809474abbe1999121696709c2f Mon Sep 17 00:00:00 2001
From: k-dominik <k-dominik@users.noreply.github.com>
Date: Thu, 9 May 2019 15:41:03 +0200
Subject: [PATCH 2/2] Deploy docs directly to gh-pages

---
 .travis.yml | 58 +++++++++++++++++++++++++++++++++++++++++++++++++----
 1 file changed, 54 insertions(+), 4 deletions(-)

diff --git a/.travis.yml b/.travis.yml
index 6f71bab75..a862fad7e 100644
--- a/.travis.yml
+++ b/.travis.yml
@@ -1,17 +1,20 @@
 language: generic
-os:
-  - linux
-  - osx
+
 env:
   global:
     - CONDA_ROOT=$HOME/miniconda
     - TEST_ENV=test-env
     - TEST_ENV_PREFIX=$CONDA_ROOT/envs/$TEST_ENV
-
+    - secure: XfurIBq0z+fiU8cRDdJB/ittCMZAmsOQHjeEVHIvAaJHEYthvqxMQURzP/+UiZ6Xn0ToDfFRm7CW0MDaYZvN7qX/MxVY7MhFtgFSk3YYOGDKeY7ODQuKMPsfiQPL+16AQB4OVO9ITiIgJSMlvitN0lfgZb4TXvcmZW0mfBAoNHc=
 cache:
   directories:
     - CONDA_ROOT
 
+# Default test stage, not in jobs, since multiple osses seem not to be supported there
+os:
+  - linux
+  - osx
+
 install:
   - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then brew update; fi
   - if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then sudo apt-get update; fi
@@ -56,6 +59,7 @@ install:
   - rm -rf ${TEST_ENV_PREFIX}/ilastik-meta/volumina
   - ln -s $TRAVIS_BUILD_DIR ${TEST_ENV_PREFIX}/ilastik-meta/volumina
 
+
 script:
   - conda activate $TEST_ENV
   - echo `which python`
@@ -64,3 +68,49 @@ script:
   - if [[ "$TRAVIS_OS_NAME" == "linux" ]]; then xvfb-run pytest --capture=no --cov=volumina; fi
   - if [[ "$TRAVIS_OS_NAME" == "osx" ]]; then pytest --capture=no --cov=volumina; fi
   - cd $TRAVIS_BUILD_DIR && git diff --name-only --diff-filter=AM master.. | grep ".*\.py" | xargs black --check
+
+
+jobs:
+  include:
+    - stage: deploy
+      os:
+        - linux
+      on:
+        branch: master
+        condition: $TRAVIS_OS_NAME = "linux"
+      name: "Deploy github pages"
+      install:
+        - sudo apt-get update
+        - export MINICONDA=https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
+        - echo $CONDA_ROOT
+        - |
+          if [[ ! -d ${CONDA_ROOT} ]]; then
+            echo "Installing Miniconda...";
+            wget $MINICONDA -O miniconda.sh &&
+            bash miniconda.sh -b -p ${CONDA_ROOT};
+          else
+            echo "Using cached Miniconda install";
+          fi
+        - echo ". $CONDA_ROOT/etc/profile.d/conda.sh" >> ~/.bashrc
+        - source ~/.bashrc
+        - conda config --set always_yes yes --set changeps1 no
+        - conda update -q conda
+        - |
+          if [[ ! -d deploy ]]; then
+            conda create -q -n deploy -c ilastik-forge -c conda-forge ilastik-dependencies-no-solvers sphinx;
+          else
+            conda install -y -n deploy -c ilastik-forge -c conda-forge ilastik-dependencies-no-solvers sphinx;
+          fi
+      script:
+        - conda activate deploy
+        - cd docs
+        - make html
+        - touch _build/html/.nojekyll
+      deploy:
+        provider: pages
+        on:
+          branch: master
+        local_dir: docs/_build/html
+        name: ilastik-bot
+        skip_cleanup: true
+        github_token: $GITHUB_TOKEN  # Set in the settings page of your repository, as a secure variable