From dd76c81a86f39b4a1c7819a8da1c8d1cb53c8869 Mon Sep 17 00:00:00 2001
From: Dominic Boceck <dboceck@gmail.com>
Date: Tue, 2 Mar 2021 12:58:23 +0100
Subject: [PATCH] Update create_result_vcf.py

Additional bugfix
---
 aidiva/helper_modules/create_result_vcf.py | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/aidiva/helper_modules/create_result_vcf.py b/aidiva/helper_modules/create_result_vcf.py
index bbf27e1..0fd4729 100644
--- a/aidiva/helper_modules/create_result_vcf.py
+++ b/aidiva/helper_modules/create_result_vcf.py
@@ -8,8 +8,11 @@ def write_header(out_file, single):
     if not single:
         out_file.write("##INFO=<ID=AIDIVA,Number=4,Type=String,Description=\"AIdiva scores: AIdiva-score,AIdiva-final-score,AIdiva-hpo-relatedness,AIdiva-hpo-relatedness-interacting,AIdiva-filter. (AIdiva-score is the pathogenicity prediction from the random forest; AIdiva-final-score is the predction finalized with the given HPO terms; AIdiva-hpo-relatedness indicates how strong the currrent variant is associated with the given HPO terms; AIdiva-filter 0 or 1 wether all internal filters were passed or not)\">\n")
         out_file.write("##INFO=<ID=AIDIVA_INHERITANCE,Number=4,Type=String,Description=\"AIdiva inheritance flags: dominant,denovo,recessive,xlinked,compound. (Each value can be 0 or 1)\">\n")
+        out_file.write("##INFO=<ID=AIDIVA_INHERITANCE_COMMENT,Number=1,Type=String,Description=\"AIdiva inheritance flags (dominant,denovo,recessive,xlinked,compound) in written form\">\n")
     else:
         out_file.write("##INFO=<ID=AIDIVA,Number=4,Type=String,Description=\"AIdiva scores: AIdiva-score,AIdiva-final-score,AIdiva-hpo-relatedness,AIdiva-hpo-relatedness-interacting,AIdiva-filter. (AIdiva-score is the pathogenicity prediction from the random forest; AIdiva-final-score is the predction finalized with the given HPO terms; AIdiva-hpo-relatedness indicates how strong the currrent variant is associated with the given HPO terms; AIdiva-filter 0 or 1 wether all internal filters were passed or not)\">\n")
+        out_file.write("##INFO=<ID=AIDIVA_INHERITANCE,Number=2,Type=String,Description=\"AIdiva inheritance flags: recessive,compound. (Each value can be 0 or 1)\">\n")
+        out_file.write("##INFO=<ID=AIDIVA_INHERITANCE_COMMENT,Number=1,Type=String,Description=\"AIdiva inheritance flags (recessive,compound) in written form\">\n")
 
     out_file.write("##contig=<ID=chr1,length=249250621,assembly=hg19>\n")
     out_file.write("##contig=<ID=chr2,length=243199373,assembly=hg19>\n")