From e6be42411b53bd4cb30587278fcb18429baf859b Mon Sep 17 00:00:00 2001
From: Boas van der Putten <32385917+boasvdp@users.noreply.github.com>
Date: Tue, 25 Jun 2024 12:36:38 +0200
Subject: [PATCH] Add distle (#48689)

* add distle

* add maintainers

* fix

* Apply suggestions from code review

* Add license_family

* The license_file is not included in the sources tarball

* add license file

---------

Co-authored-by: Martin Grigorov <martin-g@users.noreply.github.com>
---
 recipes/distle/build.sh  |  8 ++++++++
 recipes/distle/meta.yaml | 38 ++++++++++++++++++++++++++++++++++++++
 2 files changed, 46 insertions(+)
 create mode 100644 recipes/distle/build.sh
 create mode 100644 recipes/distle/meta.yaml

diff --git a/recipes/distle/build.sh b/recipes/distle/build.sh
new file mode 100644
index 0000000000000..a8d1055b51f38
--- /dev/null
+++ b/recipes/distle/build.sh
@@ -0,0 +1,8 @@
+#!/bin/bash -e
+
+# Add workaround for SSH-based Git connections from Rust/cargo.  See https://github.com/rust-lang/cargo/issues/2078 for details.
+# We set CARGO_HOME because we don't pass on HOME to conda-build, thus rendering the default "${HOME}/.cargo" defunct.
+export CARGO_NET_GIT_FETCH_WITH_CLI=true CARGO_HOME="$(pwd)/.cargo"
+
+# build statically linked binary with Rust
+RUST_BACKTRACE=1 C_INCLUDE_PATH=$PREFIX/include LIBRARY_PATH=$PREFIX/lib cargo install --verbose --root $PREFIX --path .
\ No newline at end of file
diff --git a/recipes/distle/meta.yaml b/recipes/distle/meta.yaml
new file mode 100644
index 0000000000000..1cfe3807ac8aa
--- /dev/null
+++ b/recipes/distle/meta.yaml
@@ -0,0 +1,38 @@
+{% set version = "0.1.1" %}
+{% set sha256 = "fd637102b8d305a50e76c3b2e8a88ffaa417a861ec23704c39902e5423a2e20e" %}
+
+package:
+  name: distle
+  version: {{ version }}
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('distle', max_pin="x.x") }}
+
+source:
+  url: https://github.com/KHajji/distle/archive/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+requirements:
+  build:
+    - {{ compiler("rust") }}
+    - {{ compiler('c') }}
+
+test:
+  commands:
+    - distle --help
+    - distle --version
+
+about:
+  home: https://github.com/KHajji/distle
+  license: GPL-3.0-only
+  license_file: LICENSE
+  license_family: GPL3
+  summary: "Fast distance matrix calculations on fasta and cgmlst files"
+
+extra:
+  recipe-maintainers:
+    - khajji
+    - boasvdp
+    - ids-bioinformatics
\ No newline at end of file