From 72d7ab1acb6b8288b89be72e37cfa1c0690faaa6 Mon Sep 17 00:00:00 2001
From: Yaroslav Halchenko <debian@onerussian.com>
Date: Sat, 22 Jul 2023 09:26:11 -0400
Subject: [PATCH 1/5] Add github action to codespell dev on push and PRs

---
 .github/workflows/codespell.yml | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)
 create mode 100644 .github/workflows/codespell.yml

diff --git a/.github/workflows/codespell.yml b/.github/workflows/codespell.yml
new file mode 100644
index 0000000..20ddb2c
--- /dev/null
+++ b/.github/workflows/codespell.yml
@@ -0,0 +1,22 @@
+---
+name: Codespell
+
+on:
+  push:
+    branches: [dev]
+  pull_request:
+    branches: [dev]
+
+permissions:
+  contents: read
+
+jobs:
+  codespell:
+    name: Check for spelling errors
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v3
+      - name: Codespell
+        uses: codespell-project/actions-codespell@v2

From 3f48b7f725b22ed1cf45643ac4f6b62d2a1aff29 Mon Sep 17 00:00:00 2001
From: Yaroslav Halchenko <debian@onerussian.com>
Date: Sat, 22 Jul 2023 09:26:11 -0400
Subject: [PATCH 2/5] Add rudimentary codespell config

---
 .codespellrc | 4 ++++
 1 file changed, 4 insertions(+)
 create mode 100644 .codespellrc

diff --git a/.codespellrc b/.codespellrc
new file mode 100644
index 0000000..da3c057
--- /dev/null
+++ b/.codespellrc
@@ -0,0 +1,4 @@
+[codespell]
+skip = .git,*.pdf,*.svg
+#
+# ignore-words-list =

From 61ba0ccca306024de0245f4add3f0e823751da60 Mon Sep 17 00:00:00 2001
From: Yaroslav Halchenko <debian@onerussian.com>
Date: Sat, 22 Jul 2023 09:26:19 -0400
Subject: [PATCH 3/5] Copied codespellrc from pulseq project

---
 .codespellrc | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/.codespellrc b/.codespellrc
index da3c057..1ebfbc0 100644
--- a/.codespellrc
+++ b/.codespellrc
@@ -1,4 +1,5 @@
 [codespell]
 skip = .git,*.pdf,*.svg
-#
-# ignore-words-list =
+# some abbreviated citations etc
+ignore-regex = .*Reson\. Ser.*
+ignore-words-list = te,fo,nd,maked,datas,iten,itel,tread

From 0af4eb2ab5e84066ba7e98d66e46802e423c9010 Mon Sep 17 00:00:00 2001
From: Yaroslav Halchenko <debian@onerussian.com>
Date: Sat, 22 Jul 2023 09:27:12 -0400
Subject: [PATCH 4/5] fix ambigous typo

---
 pypulseq/event_lib.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pypulseq/event_lib.py b/pypulseq/event_lib.py
index 9c86052..2f573fa 100755
--- a/pypulseq/event_lib.py
+++ b/pypulseq/event_lib.py
@@ -6,7 +6,7 @@
 
 class EventLibrary:
     """
-    Defines an event library ot maintain a list of events. Provides methods to insert new data and find existing data.
+    Defines an event library to maintain a list of events. Provides methods to insert new data and find existing data.
 
     Sequence Properties:
     - keys - A list of event IDs

From 4a249c026c2a4ecb36b6235fd197a5d15ee7195f Mon Sep 17 00:00:00 2001
From: Yaroslav Halchenko <debian@onerussian.com>
Date: Sat, 22 Jul 2023 09:27:19 -0400
Subject: [PATCH 5/5] [DATALAD RUNCMD] run codespell throughout

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "codespell -w",
 "exit": 0,
 "extra_inputs": [],
 "inputs": [],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^
---
 pypulseq/Sequence/sequence.py                 | 2 +-
 pypulseq/seq_examples/scripts/write_MPRAGE.py | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/pypulseq/Sequence/sequence.py b/pypulseq/Sequence/sequence.py
index feceb58..d93d2c7 100755
--- a/pypulseq/Sequence/sequence.py
+++ b/pypulseq/Sequence/sequence.py
@@ -882,7 +882,7 @@ def plot(
 
         Parameters
         ----------
-        label : str, defualt=str()
+        label : str, default=str()
             Plot label values for ADC events: in this example for LIN and REP labels; other valid labes are accepted as
             a comma-separated list.
         save : bool, default=False
diff --git a/pypulseq/seq_examples/scripts/write_MPRAGE.py b/pypulseq/seq_examples/scripts/write_MPRAGE.py
index 5c07bb4..b58704f 100644
--- a/pypulseq/seq_examples/scripts/write_MPRAGE.py
+++ b/pypulseq/seq_examples/scripts/write_MPRAGE.py
@@ -100,7 +100,7 @@ def main(plot: bool, write_seq: bool, seq_filename: str = "mprage_pypulseq.seq")
 
     # Calculate timing of the fast loop. We will have two blocks in the inner loop:
     # 1: spoilers/rewinders + RF
-    # 2: prewinder, phase enconding + readout
+    # 2: prewinder, phase encoding + readout
     rf.delay = pp.calc_duration(gro_Sp, gpe1, gpe2)
     gro_pre, _, _ = pp.align(right=[gro_pre, gpe1, gpe2])
     gro1.delay = pp.calc_duration(gro_pre)