From 5a762999f7815bcf7cc40212e39cd0223937b126 Mon Sep 17 00:00:00 2001
From: Marco Sertoli <marco.sertoli@tokamakenergy.co.uk>
Date: Wed, 7 Feb 2024 09:32:30 +0000
Subject: [PATCH] Ran: poetry update

---
 poetry.lock | 629 +++++++++++++++++++++++++---------------------------
 1 file changed, 298 insertions(+), 331 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index 84fa0177..fad81917 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -9,14 +9,6 @@ python-versions = "*"
 [package.extras]
 dev = ["black", "coverage", "isort", "pre-commit", "pyenchant", "pylint"]
 
-[[package]]
-name = "appnope"
-version = "0.1.3"
-description = "Disable App Nap on macOS >= 10.9"
-category = "main"
-optional = false
-python-versions = "*"
-
 [[package]]
 name = "asttokens"
 version = "2.4.1"
@@ -56,14 +48,6 @@ tests = ["attrs", "zope-interface"]
 tests-mypy = ["mypy (>=1.6)", "pytest-mypy-plugins"]
 tests-no-zope = ["attrs", "cloudpickle", "hypothesis", "pympler", "pytest (>=4.3.0)", "pytest-xdist"]
 
-[[package]]
-name = "backcall"
-version = "0.2.0"
-description = "Specifications for callback functions passed in to an API"
-category = "main"
-optional = false
-python-versions = "*"
-
 [[package]]
 name = "blinker"
 version = "1.7.0"
@@ -74,7 +58,7 @@ python-versions = ">=3.8"
 
 [[package]]
 name = "certifi"
-version = "2023.11.17"
+version = "2024.2.2"
 description = "Python package for providing Mozilla's CA Bundle."
 category = "main"
 optional = false
@@ -128,21 +112,21 @@ python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7
 
 [[package]]
 name = "contourpy"
-version = "1.1.1"
+version = "1.2.0"
 description = "Python library for calculating contours of 2D quadrilateral grids"
 category = "main"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 
 [package.dependencies]
-numpy = {version = ">=1.16,<2.0", markers = "python_version <= \"3.11\""}
+numpy = ">=1.20,<2.0"
 
 [package.extras]
 bokeh = ["bokeh", "selenium"]
 docs = ["furo", "sphinx (>=7.2)", "sphinx-copybutton"]
-mypy = ["contourpy", "docutils-stubs", "mypy (==1.4.1)", "types-pillow"]
+mypy = ["contourpy", "docutils-stubs", "mypy (==1.6.1)", "types-pillow"]
 test = ["contourpy", "matplotlib", "pillow"]
-test-no-images = ["pytest", "pytest-cov", "wurlitzer"]
+test-no-images = ["pytest", "pytest-cov", "pytest-xdist", "wurlitzer"]
 
 [[package]]
 name = "corner"
@@ -209,6 +193,17 @@ numpy = "*"
 extras = ["h5py", "scipy"]
 tests = ["coverage", "pytest", "pytest-cov"]
 
+[[package]]
+name = "exceptiongroup"
+version = "1.2.0"
+description = "Backport of PEP 654 (exception groups)"
+category = "main"
+optional = false
+python-versions = ">=3.7"
+
+[package.extras]
+test = ["pytest (>=6)"]
+
 [[package]]
 name = "execnet"
 version = "2.0.2"
@@ -246,7 +241,7 @@ typing = ["typing-extensions (>=4.8)"]
 
 [[package]]
 name = "flask"
-version = "3.0.0"
+version = "3.0.2"
 description = "A simple framework for building complex web applications."
 category = "main"
 optional = false
@@ -291,17 +286,17 @@ python-versions = "*"
 
 [[package]]
 name = "fonttools"
-version = "4.47.2"
+version = "4.48.1"
 description = "Tools to manipulate font files"
 category = "main"
 optional = false
 python-versions = ">=3.8"
 
 [package.extras]
-all = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "fs (>=2.2.0,<3)", "lxml (>=4.0,<5)", "lz4 (>=1.7.4.2)", "matplotlib", "munkres", "pycairo", "scipy", "skia-pathops (>=0.5.0)", "sympy", "uharfbuzz (>=0.23.0)", "unicodedata2 (>=15.1.0)", "xattr", "zopfli (>=0.1.4)"]
+all = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "fs (>=2.2.0,<3)", "lxml (>=4.0)", "lz4 (>=1.7.4.2)", "matplotlib", "munkres", "pycairo", "scipy", "skia-pathops (>=0.5.0)", "sympy", "uharfbuzz (>=0.23.0)", "unicodedata2 (>=15.1.0)", "xattr", "zopfli (>=0.1.4)"]
 graphite = ["lz4 (>=1.7.4.2)"]
 interpolatable = ["munkres", "pycairo", "scipy"]
-lxml = ["lxml (>=4.0,<5)"]
+lxml = ["lxml (>=4.0)"]
 pathops = ["skia-pathops (>=0.5.0)"]
 plot = ["matplotlib"]
 repacker = ["uharfbuzz (>=0.23.0)"]
@@ -425,39 +420,37 @@ python-versions = ">=3.7"
 
 [[package]]
 name = "ipython"
-version = "8.13.0"
+version = "8.18.1"
 description = "IPython: Productive Interactive Computing"
 category = "main"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 
 [package.dependencies]
-appnope = {version = "*", markers = "sys_platform == \"darwin\""}
-backcall = "*"
 colorama = {version = "*", markers = "sys_platform == \"win32\""}
 decorator = "*"
+exceptiongroup = {version = "*", markers = "python_version < \"3.11\""}
 jedi = ">=0.16"
 matplotlib-inline = "*"
 pexpect = {version = ">4.3", markers = "sys_platform != \"win32\""}
-pickleshare = "*"
-prompt-toolkit = ">=3.0.30,<3.0.37 || >3.0.37,<3.1.0"
+prompt-toolkit = ">=3.0.41,<3.1.0"
 pygments = ">=2.4.0"
 stack-data = "*"
 traitlets = ">=5"
 typing-extensions = {version = "*", markers = "python_version < \"3.10\""}
 
 [package.extras]
-all = ["black", "curio", "docrepr", "ipykernel", "ipyparallel", "ipywidgets", "matplotlib", "matplotlib (!=3.2.0)", "nbconvert", "nbformat", "notebook", "numpy (>=1.21)", "pandas", "pytest (<7)", "pytest (<7.1)", "pytest-asyncio", "qtconsole", "setuptools (>=18.5)", "sphinx (>=1.3)", "sphinx-rtd-theme", "stack-data", "testpath", "trio", "typing-extensions"]
+all = ["black", "curio", "docrepr", "exceptiongroup", "ipykernel", "ipyparallel", "ipywidgets", "matplotlib", "matplotlib (!=3.2.0)", "nbconvert", "nbformat", "notebook", "numpy (>=1.22)", "pandas", "pickleshare", "pytest (<7)", "pytest (<7.1)", "pytest-asyncio (<0.22)", "qtconsole", "setuptools (>=18.5)", "sphinx (>=1.3)", "sphinx-rtd-theme", "stack-data", "testpath", "trio", "typing-extensions"]
 black = ["black"]
-doc = ["docrepr", "ipykernel", "matplotlib", "pytest (<7)", "pytest (<7.1)", "pytest-asyncio", "setuptools (>=18.5)", "sphinx (>=1.3)", "sphinx-rtd-theme", "stack-data", "testpath", "typing-extensions"]
+doc = ["docrepr", "exceptiongroup", "ipykernel", "matplotlib", "pickleshare", "pytest (<7)", "pytest (<7.1)", "pytest-asyncio (<0.22)", "setuptools (>=18.5)", "sphinx (>=1.3)", "sphinx-rtd-theme", "stack-data", "testpath", "typing-extensions"]
 kernel = ["ipykernel"]
 nbconvert = ["nbconvert"]
 nbformat = ["nbformat"]
 notebook = ["ipywidgets", "notebook"]
 parallel = ["ipyparallel"]
 qtconsole = ["qtconsole"]
-test = ["pytest (<7.1)", "pytest-asyncio", "testpath"]
-test_extra = ["curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.21)", "pandas", "pytest (<7.1)", "pytest-asyncio", "testpath", "trio"]
+test = ["pickleshare", "pytest (<7.1)", "pytest-asyncio (<0.22)", "testpath"]
+test_extra = ["curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.22)", "pandas", "pickleshare", "pytest (<7.1)", "pytest-asyncio (<0.22)", "testpath", "trio"]
 
 [[package]]
 name = "isodate"
@@ -540,7 +533,7 @@ source = ["Cython (>=3.0.7)"]
 
 [[package]]
 name = "markupsafe"
-version = "2.1.3"
+version = "2.1.5"
 description = "Safely add untrusted strings to HTML/XML markup."
 category = "main"
 optional = false
@@ -548,21 +541,21 @@ python-versions = ">=3.7"
 
 [[package]]
 name = "matplotlib"
-version = "3.7.4"
+version = "3.8.2"
 description = "Python plotting package"
 category = "main"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 
 [package.dependencies]
 contourpy = ">=1.0.1"
 cycler = ">=0.10"
 fonttools = ">=4.22.0"
 importlib-resources = {version = ">=3.2.0", markers = "python_version < \"3.10\""}
-kiwisolver = ">=1.0.1"
-numpy = ">=1.20,<2"
+kiwisolver = ">=1.3.1"
+numpy = ">=1.21,<2"
 packaging = ">=20.0"
-pillow = ">=6.2.0"
+pillow = ">=8"
 pyparsing = ">=2.3.1"
 python-dateutil = ">=2.7"
 
@@ -621,18 +614,18 @@ tests = ["cython", "packaging", "pytest"]
 
 [[package]]
 name = "networkx"
-version = "3.1"
+version = "3.2.1"
 description = "Python package for creating and manipulating graphs and networks"
 category = "main"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 
 [package.extras]
-default = ["matplotlib (>=3.4)", "numpy (>=1.20)", "pandas (>=1.3)", "scipy (>=1.8)"]
-developer = ["mypy (>=1.1)", "pre-commit (>=3.2)"]
-doc = ["nb2plots (>=0.6)", "numpydoc (>=1.5)", "pillow (>=9.4)", "pydata-sphinx-theme (>=0.13)", "sphinx (>=6.1)", "sphinx-gallery (>=0.12)", "texext (>=0.6.7)"]
-extra = ["lxml (>=4.6)", "pydot (>=1.4.2)", "pygraphviz (>=1.10)", "sympy (>=1.10)"]
-test = ["codecov (>=2.1)", "pytest (>=7.2)", "pytest-cov (>=4.0)"]
+default = ["matplotlib (>=3.5)", "numpy (>=1.22)", "pandas (>=1.4)", "scipy (>=1.9,!=1.11.0,!=1.11.1)"]
+developer = ["changelist (==0.4)", "mypy (>=1.1)", "pre-commit (>=3.2)", "rtoml"]
+doc = ["nb2plots (>=0.7)", "nbconvert (<7.9)", "numpydoc (>=1.6)", "pillow (>=9.4)", "pydata-sphinx-theme (>=0.14)", "sphinx (>=7)", "sphinx-gallery (>=0.14)", "texext (>=0.6.7)"]
+extra = ["lxml (>=4.6)", "pydot (>=1.4.2)", "pygraphviz (>=1.11)", "sympy (>=1.10)"]
+test = ["pytest (>=7.2)", "pytest-cov (>=4.0)"]
 
 [[package]]
 name = "nodeenv"
@@ -697,14 +690,6 @@ python-versions = "*"
 [package.dependencies]
 ptyprocess = ">=0.5"
 
-[[package]]
-name = "pickleshare"
-version = "0.7.5"
-description = "Tiny 'shelve'-like database with concurrency support"
-category = "main"
-optional = false
-python-versions = "*"
-
 [[package]]
 name = "pillow"
 version = "10.2.0"
@@ -746,19 +731,19 @@ xarray = ["xarray"]
 
 [[package]]
 name = "platformdirs"
-version = "4.1.0"
+version = "4.2.0"
 description = "A small Python package for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
 category = "dev"
 optional = false
 python-versions = ">=3.8"
 
 [package.extras]
-docs = ["furo (>=2023.7.26)", "proselint (>=0.13)", "sphinx (>=7.1.1)", "sphinx-autodoc-typehints (>=1.24)"]
-test = ["appdirs (==1.4.4)", "covdefaults (>=2.3)", "pytest (>=7.4)", "pytest-cov (>=4.1)", "pytest-mock (>=3.11.1)"]
+docs = ["furo (>=2023.9.10)", "proselint (>=0.13)", "sphinx (>=7.2.6)", "sphinx-autodoc-typehints (>=1.25.2)"]
+test = ["appdirs (==1.4.4)", "covdefaults (>=2.3)", "pytest (>=7.4.3)", "pytest-cov (>=4.1)", "pytest-mock (>=3.12)"]
 
 [[package]]
 name = "pluggy"
-version = "1.3.0"
+version = "1.4.0"
 description = "plugin and hook calling mechanisms for python"
 category = "dev"
 optional = false
@@ -942,7 +927,7 @@ six = ">=1.5"
 
 [[package]]
 name = "pytz"
-version = "2023.3.post1"
+version = "2024.1"
 description = "World timezone definitions, modern and historical"
 category = "main"
 optional = false
@@ -958,11 +943,11 @@ python-versions = ">=3.6"
 
 [[package]]
 name = "rdflib"
-version = "6.3.2"
+version = "7.0.0"
 description = "RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information."
 category = "main"
 optional = false
-python-versions = ">=3.7,<4.0"
+python-versions = ">=3.8.1,<4.0.0"
 
 [package.dependencies]
 isodate = ">=0.6.0,<0.7.0"
@@ -1012,23 +997,23 @@ ldap = ["ldap3"]
 
 [[package]]
 name = "scikit-learn"
-version = "1.3.2"
+version = "1.4.0"
 description = "A set of python modules for machine learning and data mining"
 category = "main"
 optional = false
-python-versions = ">=3.8"
+python-versions = ">=3.9"
 
 [package.dependencies]
-joblib = ">=1.1.1"
-numpy = ">=1.17.3,<2.0"
-scipy = ">=1.5.0"
+joblib = ">=1.2.0"
+numpy = ">=1.19.5"
+scipy = ">=1.6.0"
 threadpoolctl = ">=2.0.0"
 
 [package.extras]
-benchmark = ["matplotlib (>=3.1.3)", "memory-profiler (>=0.57.0)", "pandas (>=1.0.5)"]
-docs = ["Pillow (>=7.1.2)", "matplotlib (>=3.1.3)", "memory-profiler (>=0.57.0)", "numpydoc (>=1.2.0)", "pandas (>=1.0.5)", "plotly (>=5.14.0)", "pooch (>=1.6.0)", "scikit-image (>=0.16.2)", "seaborn (>=0.9.0)", "sphinx (>=6.0.0)", "sphinx-copybutton (>=0.5.2)", "sphinx-gallery (>=0.10.1)", "sphinx-prompt (>=1.3.0)", "sphinxext-opengraph (>=0.4.2)"]
-examples = ["matplotlib (>=3.1.3)", "pandas (>=1.0.5)", "plotly (>=5.14.0)", "pooch (>=1.6.0)", "scikit-image (>=0.16.2)", "seaborn (>=0.9.0)"]
-tests = ["black (>=23.3.0)", "matplotlib (>=3.1.3)", "mypy (>=1.3)", "numpydoc (>=1.2.0)", "pandas (>=1.0.5)", "pooch (>=1.6.0)", "pyamg (>=4.0.0)", "pytest (>=7.1.2)", "pytest-cov (>=2.9.0)", "ruff (>=0.0.272)", "scikit-image (>=0.16.2)"]
+benchmark = ["matplotlib (>=3.3.4)", "memory-profiler (>=0.57.0)", "pandas (>=1.1.5)"]
+docs = ["Pillow (>=7.1.2)", "matplotlib (>=3.3.4)", "memory-profiler (>=0.57.0)", "numpydoc (>=1.2.0)", "pandas (>=1.1.5)", "plotly (>=5.14.0)", "pooch (>=1.6.0)", "scikit-image (>=0.17.2)", "seaborn (>=0.9.0)", "sphinx (>=6.0.0)", "sphinx-copybutton (>=0.5.2)", "sphinx-gallery (>=0.15.0)", "sphinx-prompt (>=1.3.0)", "sphinxext-opengraph (>=0.4.2)"]
+examples = ["matplotlib (>=3.3.4)", "pandas (>=1.1.5)", "plotly (>=5.14.0)", "pooch (>=1.6.0)", "scikit-image (>=0.17.2)", "seaborn (>=0.9.0)"]
+tests = ["black (>=23.3.0)", "matplotlib (>=3.3.4)", "mypy (>=1.3)", "numpydoc (>=1.2.0)", "pandas (>=1.1.5)", "polars (>=0.19.12)", "pooch (>=1.6.0)", "pyamg (>=4.0.0)", "pyarrow (>=12.0.0)", "pytest (>=7.1.2)", "pytest-cov (>=2.9.0)", "ruff (>=0.0.272)", "scikit-image (>=0.17.2)"]
 
 [[package]]
 name = "scipy"
@@ -1157,7 +1142,7 @@ python-versions = ">=3.8"
 
 [[package]]
 name = "urllib3"
-version = "2.1.0"
+version = "2.2.0"
 description = "HTTP library with thread-safe connection pooling, file post, and more."
 category = "main"
 optional = false
@@ -1165,6 +1150,7 @@ python-versions = ">=3.8"
 
 [package.extras]
 brotli = ["brotli (>=1.0.9)", "brotlicffi (>=0.8.0)"]
+h2 = ["h2 (>=4,<5)"]
 socks = ["pysocks (>=1.5.6,!=1.5.7,<2.0)"]
 zstd = ["zstandard (>=0.18.0)"]
 
@@ -1249,10 +1235,6 @@ aniso8601 = [
     {file = "aniso8601-9.0.1-py2.py3-none-any.whl", hash = "sha256:1d2b7ef82963909e93c4f24ce48d4de9e66009a21bf1c1e1c85bdd0812fe412f"},
     {file = "aniso8601-9.0.1.tar.gz", hash = "sha256:72e3117667eedf66951bb2d93f4296a56b94b078a8a95905a052611fb3f1b973"},
 ]
-appnope = [
-    {file = "appnope-0.1.3-py2.py3-none-any.whl", hash = "sha256:265a455292d0bd8a72453494fa24df5a11eb18373a60c7c0430889f22548605e"},
-    {file = "appnope-0.1.3.tar.gz", hash = "sha256:02bd91c4de869fbb1e1c50aafc4098827a7a54ab2f39d9dcba6c9547ed920e24"},
-]
 asttokens = [
     {file = "asttokens-2.4.1-py2.py3-none-any.whl", hash = "sha256:051ed49c3dcae8913ea7cd08e46a606dba30b79993209636c4875bc1d637bc24"},
     {file = "asttokens-2.4.1.tar.gz", hash = "sha256:b03869718ba9a6eb027e134bfdf69f38a236d681c83c160d510768af11254ba0"},
@@ -1264,17 +1246,13 @@ attrs = [
     {file = "attrs-23.2.0-py3-none-any.whl", hash = "sha256:99b87a485a5820b23b879f04c2305b44b951b502fd64be915879d77a7e8fc6f1"},
     {file = "attrs-23.2.0.tar.gz", hash = "sha256:935dc3b529c262f6cf76e50877d35a4bd3c1de194fd41f47a2b7ae8f19971f30"},
 ]
-backcall = [
-    {file = "backcall-0.2.0-py2.py3-none-any.whl", hash = "sha256:fbbce6a29f263178a1f7915c1940bde0ec2b2a967566fe1c65c1dfb7422bd255"},
-    {file = "backcall-0.2.0.tar.gz", hash = "sha256:5cbdbf27be5e7cfadb448baf0aa95508f91f2bbc6c6437cd9cd06e2a4c215e1e"},
-]
 blinker = [
     {file = "blinker-1.7.0-py3-none-any.whl", hash = "sha256:c3f865d4d54db7abc53758a01601cf343fe55b84c1de4e3fa910e420b438d5b9"},
     {file = "blinker-1.7.0.tar.gz", hash = "sha256:e6820ff6fa4e4d1d8e2747c2283749c3f547e4fee112b98555cdcdae32996182"},
 ]
 certifi = [
-    {file = "certifi-2023.11.17-py3-none-any.whl", hash = "sha256:e036ab49d5b79556f99cfc2d9320b34cfbe5be05c5871b51de9329f0603b0474"},
-    {file = "certifi-2023.11.17.tar.gz", hash = "sha256:9b469f3a900bf28dc19b8cfbf8019bf47f7fdd1a65a1d4ffb98fc14166beb4d1"},
+    {file = "certifi-2024.2.2-py3-none-any.whl", hash = "sha256:dc383c07b76109f368f6106eee2b593b04a011ea4d55f652c6ca24a754d1cdd1"},
+    {file = "certifi-2024.2.2.tar.gz", hash = "sha256:0569859f95fc761b18b45ef421b1290a0f65f147e92a1e5eb3e635f9a5e4e66f"},
 ]
 cfgv = [
     {file = "cfgv-3.4.0-py2.py3-none-any.whl", hash = "sha256:b7265b1f29fd3316bfcd2b330d63d024f2bfd8bcb8b0272f8e19a504856c48f9"},
@@ -1404,58 +1382,50 @@ colorama = [
     {file = "colorama-0.4.6.tar.gz", hash = "sha256:08695f5cb7ed6e0531a20572697297273c47b8cae5a63ffc6d6ed5c201be6e44"},
 ]
 contourpy = [
-    {file = "contourpy-1.1.1-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:46e24f5412c948d81736509377e255f6040e94216bf1a9b5ea1eaa9d29f6ec1b"},
-    {file = "contourpy-1.1.1-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:0e48694d6a9c5a26ee85b10130c77a011a4fedf50a7279fa0bdaf44bafb4299d"},
-    {file = "contourpy-1.1.1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:a66045af6cf00e19d02191ab578a50cb93b2028c3eefed999793698e9ea768ae"},
-    {file = "contourpy-1.1.1-cp310-cp310-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:4ebf42695f75ee1a952f98ce9775c873e4971732a87334b099dde90b6af6a916"},
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