ruff.toml

exclude = [
    # Default values
    ".bzr",
    ".direnv",
    ".eggs",
    ".git",
    ".git-rewrite",
    ".hg",
    ".ipynb_checkpoints",
    ".mypy_cache",
    ".nox",
    ".pants.d",
    ".pyenv",
    ".pytest_cache",
    ".pytype",
    ".ruff_cache",
    ".svn",
    ".tox",
    ".venv",
    ".vscode",
    "__pypackages__",
    "_build",
    "_version.py",
    "versioneer.py",
    "buck-out",
    "build",
    "dist",
    "node_modules",
    "site-packages",
    "venv",
    # Custom values
    "old",
    "*tmp*",
    "*temp*",
    "data-hg19*",
    "docs",
    "migrations"
]

line-length = 80
indent-width = 4

target-version = "py310"

[lint]
select = ["E", "F", "W", "C90", "I", "UP", "ASYNC", "S", "BLE", "FBT", "B", "A", "COM", "C4", "T10", "EXE", "ISC", "LOG", "G", "INP", "PIE", "T20", "PT", "Q", "RSE", "RET", "SLF", "SIM", "ARG", "PTH", "FIX", "ERA", "PD", "TRY", "PERF", "FURB", "RUF"]
ignore = [
    "D105", "D107", "D417", "UP015", "UP038", "FURB152", "PD901",
    "TRY003",
    "T201", "S101", "PTH",  # for separate tasks, fix issues and then enable these rules
    "PT006",  # for separate task - currently we use 'csv', but maybe change to 'tuple' or 'list'?
    "PERF203", # Python 3.11 introduces zero cost exception handling
    "S603",
    "S404",
    "B019",
    "FURB192",
]
fixable = ["ALL"]
preview = true

[lint.per-file-ignores]
"test*.py" = ["S101", "SLF"]
"conftest.py" = ["D"]
"setup.py" = ["INP001"]

[lint.mccabe]
max-complexity = 20

[lint.flake8-quotes]
inline-quotes = "double"
docstring-quotes = "double"
multiline-quotes = "double"

[lint.pydocstyle]
convention = "pep257"