Help with model selection, protein mixture models #200
Replies: 3 comments 5 replies
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@veronicamb here's one way to do what you want. I think the issue is that you have some competing demands in So, to fix that you can just put all the models you are interested in in
Another tip - if you know you have 40 threads available, then I suggest just specifying all 40 for ModelFinder. It will usually be faster than Just to note, I have to say that I too am wondering if we have a bug with |
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Will do! Thanks again |
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Hello all,
I'm trying to use iqtree to find the best-fitting model for a protein dataset and I'd like to include Protein Mixture Models in the models considered.
Here's the command I used:
iqtree -s ../04_alignments/03_trimmed/06_informed/01_coding_NUC/01_AA
-pre Subset1_test2
-nt AUTO
-ntmax 40
-m MF
-mset WAG,LG,JTT
-msub nuclear
-madd C10,C20,C30,C40,C50,C60,LG4M,LG4X,CF4
However, the protein mixture models were not considered during the search. Can you help with what's missing in the command to fix it?
thank you!
Veronica
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