dependencies.R

update.packages()

if (!requireNamespace("BiocManager", quietly = TRUE))
  install.packages("BiocManager")
  BiocManager::install()
  BiocManager::install('remotes')
  BiocManager::install("DelayedArray", version = "3.8", update = TRUE, ask = FALSE)
  BiocManager::install("HDF5Array", version = "3.8", update = TRUE, ask = FALSE)
  BiocManager::install("GenomicRanges", version = "3.8", update = TRUE, ask = FALSE)
  BiocManager::install("biomaRt", version = "3.8", update = TRUE, ask = FALSE)
  BiocManager::install("IlluminaHumanMethylationEPICanno.ilm10b2.hg19", version = "3.8")
  BiocManager::install('rafalab/bumphunter', ref = "RELEASE_3_8")
  BiocManager::install("minfi", version = "3.8", update = TRUE, ask = FALSE)
  BiocManager::install("conumee", version = "3.8", update = TRUE, ask = FALSE)