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<!DOCTYPE html>
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<div class="h2 title">Jacqueline Mattos</div>
<p></p>
<p class="category text-white">PhD Candidate at University of Campinas (Brazil)</p>
<p class="category text-white">Visiting Researcher at University of Colorado Boulder (USA)</p>
<p class="category text-white">Evolutionary Genomics | Molecular Ecology | Conservation Biology</p>
<!--<a class="btn btn-primary" href="documentos/CV-Jacqueline-Mattos-Dec-2022.pdf" data-aos="zoom-in" data-aos-anchor="data-aos-anchor">Download CV</a>-->
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<div class="h4 text-center mb-4 title">About me</div>
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src="images/talk-colorado-native-plant-society.jpeg" alt="Card image cap">
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<div class="card-body imagem-com-card" style="text-align: justify; display: inline;">
<p>I have a BSc in Biological Sciences from São Paulo State University (Brazil), with a year
abroad studying at the University of Liverpool (UK).
At the moment I am pursuing my PhD degree, having my research focused on genomics and
bioinformatics for an evolutionary biology approach. For research purposes, I have had
training in both R and Python, and I am also skilled in Linux command line, bash scripting,
SQL, High Performance Computing (HPC), GitHub and Git
version control, and many genomic/bioinformatics frameworks and tools for analyses of NGS
data. I have experience with
de-novo genome assembly, chromosome-level assembly, and transcriptomic assembly as well. In
addition, I have skills with many programming languages and web/software development tools,
such as JavaScript, PHP, HTML, CSS.
</p>
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<div class="card-body" style="text-align: justify;">
<!--<p>
I am currently a PhD Candidate at the University of Campinas, in Brazil, and also a Visiting Researcher at the University of Colorado Boulder, in the US.
My research is focused on using bioinformatics and genomics in order to investigate evolutionary processes on natural populations of the neotropical orchid Epidendrum fulgens.
I have a BSc in Biology and a MSc in Environmental Sciences from very prestigious universities in Brazil.
I also have an undergraduate year abroad where I studied at the University of Liverpool, in the UK.
For research purposes, I have had training in both R and Python, and I am also skilled in Linux Command Line, Bash scripting,
SQL, High Performance Computing (HPC), GitHub and Git version control, and many genomic/bioinformatics frameworks and tools for analyses of NGS
data.
</p>-->
<p>
I am currently a PhD Candidate in Plant Sciences at the University of Campinas (Brazil) and also a Visiting Researcher at the University of Colorado Boulder (US).
My thesis research is focused on using bioinformatics and genomics in order to investigate adaptation and evolutionary processes in natural populations of the neotropical orchid Epidendrum fulgens,
which occurs along an environmental gradient in the highly deforested Brazilian Atlantic Forest.
I have a BSc in Biology from São Paulo State University (Brazil), with a year studying abroad at the University of Liverpool (UK). I also have a Master's Degree in Environmental Sciences from the Federal University of São Carlos (Brazil),
having developed research within the fields of ecology & conservation.
My main skills at the moment are in evolutionary genomics, molecular ecology and bioinformatics, having had training in many programming languages and computational frameworks for the analyses of large genomic datasets.
</p>
<p>
Outside the lab, I love hiking and rock climbing, or doing any activity that allows me to connect with the Earth.
I love nature & wildlife photography and also playing music. Find my photography gallery <a href="https://www.flickr.com/photos/134298936@N08/">here</a>.
</p>
<p>
</p>
<p>
<i class="fa fa-envelope" aria-hidden="true"></i> [email protected]
</p>
<p>
<i class="fa fa-globe" aria-hidden="true"></i> Denver, Colorado/ USA
</p>
<!--
<p>
<i class="fa-thin fa-magnifying-glass" aria-hidden="true"></i> <a href="https://www.researchgate.net/profile/Jacqueline-De-Mattos">My ResearchGate</a>
</p>-->
<!--<p>
<i class="fa fa-file" aria-hidden="true"></i> <a href="documentos/CV-Jacqueline-Mattos-Dec-2022.pdf">Download my CV</a>
</p>-->
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<div class="section" id="research">
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<div class="h4 text-center mb-4 title">Research Interests</div>
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<p>I am mainly interested in using highly innovative tools and technologies in the study of
biological diversity and evolutionary processes.
My main passion today is using bioinformatics in the study of genomic and transcriptomic data,
but I am also interested in developing new software for the investigation of biological
systems.
My excitement for science continues to grow everyday, and the possibility of developing new
methods and
analyses that can help the advancement of biology is what drives me towards working and
studying more.
</p>
</div>
</div>-->
<div class="card-body" style="text-align: justify;">
<p>
I am mainly interested in using highly innovative tools and technologies in the study of
biological diversity and evolutionary processes. My main passion today is using bioinformatics in the study of genomic data,
but I am also interested in developing new software for the investigation of biological
systems.
</p>
<p>
<a>Research Areas</a>
<ul>
<li> Genome Assembly </li>
<li> Bioinformatics</li>
<li> Population Genomics </li>
<li> Crop Genomics </li>
<li> Adaptation and Speciation </li>
<li> Conservation Biology </li>
<li> Tropical Ecology </li>
<li> Molecular Ecology </li>
<li> Computational Biology </li>
</ul>
</p>
<!--<p><a href="https://www.researchgate.net/profile/Jacqueline-De-Mattos">My ResearchGate</a></p>-->
</div>
</div>
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</div>
</div>
</div>
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</div>
<!--<div class="section" id="skill">
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line</span>
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data-aos-duration="2000" role="progressbar" aria-valuenow="90" aria-valuemin="0"
aria-valuemax="100" style="width: 90%;"></div><span class="progress-value">90%</span>
</div>
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<div class="progress-container progress-primary"><span class="progress-badge">Bash scripting</span>
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data-aos-duration="2000" role="progressbar" aria-valuenow="90" aria-valuemin="0"
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</div>
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analyses</span>
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data-aos-duration="2000" role="progressbar" aria-valuenow="90" aria-valuemin="0"
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data-aos-duration="2000" role="progressbar" aria-valuenow="60" aria-valuemin="0"
aria-valuemax="100" style="width: 60%;"></div><span class="progress-value">60%</span>
</div>
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<div class="progress-container progress-primary"><span class="progress-badge">Genomics</span>
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data-aos-duration="2000" role="progressbar" aria-valuenow="90" aria-valuemin="0"
aria-valuemax="100" style="width: 90%;"></div><span class="progress-value">90%</span>
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<div class="progress">
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data-aos-duration="2000" role="progressbar" aria-valuenow="90" aria-valuemin="0"
aria-valuemax="100" style="width: 90%;"></div><span class="progress-value">90%</span>
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</div>-->
<div class="section" id="publications">
<div class="container cc-education">
<div class="h4 text-center mb-4 title">Publications</div>
<div class="h5 mb-4 title">2024</div>
<div class="card">
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<div class="h5">Molecular Ecology</div>
<p><a href="https://onlinelibrary.wiley.com/doi/full/10.1111/mec.17437">
Ecological transcriptomics reveals stress response pathways of a ground-herb species in a waterlogging gradient of Amazonian riparian forests</a>
Clarisse Palma-Silva, Amanda F. Mortati, Cleber Juliano Neves Chaves, Bárbara Simões Santos Leal, Rafael V. Ribeiro, Fabio Pinheiro, Milene Ferro, Diego M. Riaño-Pachón, Jacqueline Salvi de Mattos, Marília Manupella Tavares, Paulo Aecyo, Tami da Costa Cacossi, Jochen Schöngart, Maria Teresa Fernandez Piedade, Thiago André </p>
</div>
</div>
</div>
</div>
<div class="h5 mb-4 title">2023</div>
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<div class="col-md-12" data-aos="fade-left" data-aos-offset="50" data-aos-duration="500">
<div class="card-body">
<div class="h5">Journal of Biogeography</div>
<p><a href="https://doi.org/10.1111/jbi.14629">
MATTOS et al. 2023 The relative role of climate and biotic interactions in shaping the range limits of a neotropical orchid.</a>
Jacqueline Salvi de Mattos, Fabio Pinheiro, Bruno Garcia Luize, Cleber Juliano Neves Chaves, Thales Moreira de Lima, Clarisse Palma da Silva, Bárbara Simões Santos Leal. https://doi.org/10.1111/jbi.14629</p>
</div>
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</div>
</div>
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<div class="col-md-12" data-aos="fade-left" data-aos-offset="50" data-aos-duration="500">
<div class="card-body">
<div class="h5">Journal of Mountain Science</div>
<p><a href="https://link.springer.com/article/10.1007/s11629-022-7838-z">Shared-role of vegetation types, elevation and soil affecting plant diversity in an old-tropical mountain hotspot.</a>
https://link.springer.com/article/10.1007/s11629-022-7838-z
</p>
</div>
</div>
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<div class="h5">Field Museum</div>
<p><a href="https://fieldguides.fieldmuseum.org/guides/guide/1435">Plants from rocky outcrops of campo rupestre of the Serra do Cipó, 2023.</a>
Leonor Patrícia Cerdeira Morellato Maria Gabriela Gutierrez Camargo, Soizig Le Stradic,
Jacqueline Salvi de Mattos, Beatriz Lopes Monteiro, Gustavo Shimizu, Cassiano A. Dorneles Welker, Marcelo Monge
</p>
</div>
</div>
</div>
</div>
<div class="h5 mb-4 title">2021</div>
<div class="card">
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<div class="card-body">
<div class="h5">Botanical Journal of the Linnean Society</div>
<p>MATTOS, J.S., MORELLATO, L.P.C., BATALHA, M.A. 2021.
<a href="https://doi.org/10.1093/botlinnean/boab017">Plant communities in tropical ancient mountains: how are they spatially and evolutionary structured?</a>
Botanical Journal of the Linnean Society. January 2021.</p>
</div>
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<div class="h5 mb-4 title">2019</div>
<div class="card">
<div class="row">
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<div class="h5">Plant Ecology</div>
<p>MATTOS, J.S., MORELLATO, L.P.C., CAMARGO, M.G.G., BATALHA, M.A. 2019.
<a href="HTTPS://DOI.ORG/10.1007/S11258-019-00982-5">Plant phylogenetic diversity of
tropical mountaintop rocky grasslands: local and regional constraints.</a>
Plant Ecology. DOI: HTTPS://DOI.ORG/10.1007/S11258-019-00982-5</p>
</div>
</div>
</div>
</div>
<div class="h5 mb-4 title">2017</div>
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<div class="h5">Biological Reviews</div>
<p>GALETTI, MAURO ; MOLEÓN, MARCOS ; JORDANO, PEDRO ; PIRES, MATHIAS M.; GUIMARÃES, PAULO R. ; PAPE,
THOMAS
; NICHOLS,
ELIZABETH ; HANSEN, DENNIS; OLESEN, JENS, M.; MUNK, MICHAEL ; DE MATTOS, JACQUELINE S. ;
SCHWEIGER,
ANDREAS H.;
OWEN-SMITH, NORMAN ; JOHNSON, CHRISTOPHER N.; MARQUIS, ROBERT J.;SVENNING, JENS-CHRISTIAN.
2018.
<a href="HTTPS://DOI.ORG/10.1111/BRV.12374">Ecological and evolutionary legacy of megafauna extinctions.</a> Biological Reviews, vol. 93, issue 2. DOI:
HTTPS://DOI.ORG/10.1111/BRV.12374</p>
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