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preprocessing_brain_compositing.mlab
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preprocessing_brain_compositing.mlab
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// MDL v1 utf8
mevislabVersion = 3.2
network {
watchlist = ""
}
module ImageSave {
internal {
frame = "889 -491 96 72"
moduleGroupName = ""
showNetworkPanel = true
windows {
window _default {
geometry = "415 41 324 417"
sizeHint = "324 417"
wasOpen = no
}
}
}
fields {
instanceName = ImageSave
taskVerboseLogging = FALSE
filename = $(NETWORK)/_data_/brain_composite_20_smooth2.dcm
format = DICOM
comment = MeVisLab
allowOverwrite = TRUE
autoFilename = FALSE
sourceName = ""
postfix = .result1
dicomNameUsed = TRUE
dicomMetaHeader = TRUE
dicomDerived = TRUE
dicomDerivedImageType = "OTHER\\MEVISLAB"
dicomDiscardTags = FrameSpecific
dicomStoreTimeInfo = None
dicomSetWindow = FALSE
dicomWindowCenter = 0
dicomWindowWidth = 0
dicomIgnoreHalfVoxelShift = FALSE
tiffCompression = None
tiffTileX = 128
tiffTileY = 128
tiffTileXAuto = TRUE
tiffTileYAuto = TRUE
tiffLinearRGB = FALSE
saveDicomHeaderOnly = FALSE
pngCompression = Default
pngInterlaced = FALSE
jpegQuality = 75
jpegProgressive = FALSE
}
}
module vtkMINCImageReader {
internal {
frame = "100 1285 160 56"
moduleGroupName = scan_10
windows {
window _default {
geometry = "126 23 478 742"
sizeHint = "376 742"
wasOpen = no
}
}
}
fields {
instanceName = vtkMINCImageReader9
rescaleRealValues = 0
timeStep = 0
fileName = $(NETWORK)/_data_/subject44_crisp_v.mnc
numberOfScalarComponents = 1
fileDimensionality = 2
fileNameSliceOffset = 0
fileNameSliceSpacing = 1
swapBytes = 0
fileLowerLeft = 0
dataSpacing = "0.5 0.5 0.5 "
dataOrigin = "-90.25 -126.25 -72.25 "
dataExtent = "0 361 0 433 0 361 "
filePattern = %s.%d
memoryBufferLength = 0
dataScalarType = 3
dataByteOrder = 1
status = "Output is valid"
}
}
module vtkMINCImageReader {
internal {
frame = "-388 1293 160 56"
moduleGroupName = scan_9
windows {
window _default {
geometry = "126 23 478 742"
sizeHint = "376 742"
wasOpen = no
}
}
}
fields {
instanceName = vtkMINCImageReader8
rescaleRealValues = 0
timeStep = 0
fileName = $(NETWORK)/_data_/subject43_crisp_v.mnc
numberOfScalarComponents = 1
fileDimensionality = 2
fileNameSliceOffset = 0
fileNameSliceSpacing = 1
swapBytes = 0
fileLowerLeft = 0
dataSpacing = "0.5 0.5 0.5 "
dataOrigin = "-90.25 -126.25 -72.25 "
dataExtent = "0 361 0 433 0 361 "
filePattern = %s.%d
memoryBufferLength = 0
dataScalarType = 3
dataByteOrder = 1
status = "Output is valid"
}
}
module vtkMINCImageReader {
internal {
frame = "-876 1285 160 56"
moduleGroupName = scan_8
windows {
window _default {
geometry = "126 23 478 742"
sizeHint = "376 742"
wasOpen = no
}
}
}
fields {
instanceName = vtkMINCImageReader7
rescaleRealValues = 0
timeStep = 0
fileName = $(NETWORK)/_data_/subject42_crisp_v.mnc
numberOfScalarComponents = 1
fileDimensionality = 2
fileNameSliceOffset = 0
fileNameSliceSpacing = 1
swapBytes = 0
fileLowerLeft = 0
dataSpacing = "0.5 0.5 0.5 "
dataOrigin = "-90.25 -126.25 -72.25 "
dataExtent = "0 361 0 433 0 361 "
filePattern = %s.%d
memoryBufferLength = 0
dataScalarType = 3
dataByteOrder = 1
status = "Output is valid"
}
}
module vtkMINCImageReader {
internal {
frame = "-1364 1277 160 56"
moduleGroupName = scan_7
windows {
window _default {
geometry = "126 23 478 742"
sizeHint = "376 742"
wasOpen = no
}
}
}
fields {
instanceName = vtkMINCImageReader6
rescaleRealValues = 0
timeStep = 0
fileName = $(NETWORK)/_data_/subject41_crisp_v.mnc
numberOfScalarComponents = 1
fileDimensionality = 2
fileNameSliceOffset = 0
fileNameSliceSpacing = 1
swapBytes = 0
fileLowerLeft = 0
dataSpacing = "0.5 0.5 0.5 "
dataOrigin = "-90.25 -126.25 -72.25 "
dataExtent = "0 361 0 433 0 361 "
filePattern = %s.%d
memoryBufferLength = 0
dataScalarType = 3
dataByteOrder = 1
status = "Output is valid"
}
}
module vtkMINCImageReader {
internal {
frame = "-1877 1286 160 56"
moduleGroupName = scan_6
windows {
window _default {
geometry = "126 23 478 742"
sizeHint = "376 742"
wasOpen = no
}
}
}
fields {
instanceName = vtkMINCImageReader5
rescaleRealValues = 0
timeStep = 0
fileName = $(NETWORK)/_data_/subject38_crisp_v.mnc
numberOfScalarComponents = 1
fileDimensionality = 2
fileNameSliceOffset = 0
fileNameSliceSpacing = 1
swapBytes = 0
fileLowerLeft = 0
dataSpacing = "0.5 0.5 0.5 "
dataOrigin = "-90.25 -126.25 -72.25 "
dataExtent = "0 361 0 433 0 361 "
filePattern = %s.%d
memoryBufferLength = 0
dataScalarType = 3
dataByteOrder = 1
status = "Output is valid"
}
}
module Arithmetic {
internal {
frame = "49 -179 256 72"
moduleGroupName = ""
showNetworkPanel = true
windows {
window _default {
geometry = "251 36 475 464"
sizeHint = "475 464"
wasOpen = no
}
window _scriptingconsole {
geometry = "180 42 600 500"
sizeHint = "256 192"
wasOpen = no
}
}
}
fields {
instanceName = Arithmetic1
expression = (a+b+c+d+e+f+g+h+i+j)/10
i1 = 0
i2 = 0
i3 = 0
i4 = 0
i5 = 0
i6 = 0
d1 = 0
d2 = 0
d3 = 0
d4 = 0
d5 = 0
d6 = 0
d7 = 0
d8 = 0
d9 = 0
d10 = 0
d11 = 0
d12 = 0
minValue = 0
maxValue = 1
setMinMaxValues = FALSE
dataType = float
setDataType = TRUE
updateMode = AutoUpdate
applyMode = AutoApply
domainErrorHandling = ErrorMessage
numberOfInputs = 10
expressionComment = ""
scalarVariablesComment = ""
}
}
module Arithmetic {
internal {
frame = "513 -187 256 72"
moduleGroupName = ""
showNetworkPanel = true
windows {
window _default {
geometry = "243 60 475 464"
sizeHint = "475 464"
wasOpen = no
}
}
}
fields {
instanceName = Arithmetic
expression = a+b+c+d+e+f+g+h+i+j
i1 = 0
i2 = 0
i3 = 0
i4 = 0
i5 = 0
i6 = 0
d1 = 0
d2 = 0
d3 = 0
d4 = 0
d5 = 0
d6 = 0
d7 = 0
d8 = 0
d9 = 0
d10 = 0
d11 = 0
d12 = 0
minValue = 0
maxValue = 1
setMinMaxValues = FALSE
dataType = int8
setDataType = FALSE
updateMode = AutoUpdate
applyMode = AutoApply
domainErrorHandling = ErrorMessage
numberOfInputs = 10
expressionComment = ""
scalarVariablesComment = ""
}
}
module vtkMINCImageReader {
internal {
frame = "-414 573 160 56"
moduleGroupName = scan_4
windows {
window _default {
geometry = "126 23 478 742"
sizeHint = "376 742"
wasOpen = no
}
}
}
fields {
instanceName = vtkMINCImageReader1
rescaleRealValues = 0
timeStep = 0
fileName = $(NETWORK)/_data_/subject18_crisp_v.mnc
numberOfScalarComponents = 1
fileDimensionality = 2
fileNameSliceOffset = 0
fileNameSliceSpacing = 1
swapBytes = 0
fileLowerLeft = 0
dataSpacing = "0.5 0.5 0.5 "
dataOrigin = "-90.25 -126.25 -72.25 "
dataExtent = "0 361 0 433 0 361 "
filePattern = %s.%d
memoryBufferLength = 0
dataScalarType = 3
dataByteOrder = 1
status = "Output is valid"
}
}
module vtkMINCImageReader {
internal {
frame = "-882 573 152 56"
moduleGroupName = scan_3
windows {
window _default {
geometry = "126 23 478 742"
sizeHint = "376 742"
wasOpen = no
}
}
}
fields {
instanceName = vtkMINCImageReader
rescaleRealValues = 0
timeStep = 0
fileName = $(NETWORK)/_data_/subject06_crisp_v.mnc
numberOfScalarComponents = 1
fileDimensionality = 2
fileNameSliceOffset = 0
fileNameSliceSpacing = 1
swapBytes = 0
fileLowerLeft = 0
dataSpacing = "0.5 0.5 0.5 "
dataOrigin = "-90.25 -126.25 -72.25 "
dataExtent = "0 361 0 433 0 361 "
filePattern = %s.%d
memoryBufferLength = 0
dataScalarType = 3
dataByteOrder = 1
status = "Output is valid"
}
}
module vtkMINCImageReader {
internal {
frame = "65 573 160 56"
moduleGroupName = scan_5
windows {
window _default {
geometry = "126 23 478 742"
sizeHint = "376 742"
wasOpen = no
}
}
}
fields {
instanceName = vtkMINCImageReader4
rescaleRealValues = 0
timeStep = 0
fileName = $(NETWORK)/_data_/subject20_crisp_v.mnc
numberOfScalarComponents = 1
fileDimensionality = 2
fileNameSliceOffset = 0
fileNameSliceSpacing = 1
swapBytes = 0
fileLowerLeft = 0
dataSpacing = "0.5 0.5 0.5 "
dataOrigin = "-90.25 -126.25 -72.25 "
dataExtent = "0 361 0 433 0 361 "
filePattern = %s.%d
memoryBufferLength = 0
dataScalarType = 3
dataByteOrder = 1
status = "Output is valid"
}
}
module VTKToMLImage {
internal {
frame = "1 381 128 56"
moduleGroupName = scan_5
windows {
window _default {
geometry = "290 45 529 693"
sizeHint = "509 748"
wasOpen = no
}
}
}
fields {
instanceName = VTKToMLImage4
convert2CompsTo = Complex
convert3CompsTo = Vec3
convert4CompsTo = Mat2
convert6CompsTo = Vec6
convert9CompsTo = Mat3
convert16CompsTo = Mat4
convert25CompsTo = Mat5
convert36CompsTo = Mat6
dirCosines = "1 0 0 0
0 1 0 0
0 0 1 0
0 0 0 1"
useDirCosines = FALSE
adaptOriginToVTKExtent = TRUE
status = "Valid vtkImageData connected"
imgInfo = "# Cells = 56428993
# Points = 56873096
# Components = 1
Extent = 362 x 434 x 362
Scalar Type = unsigned char(3)
Spacing = 0.500000 x 0.500000 x 0.500000
Origin = -90.250000 x -126.250000 x -72.250000
Min Vox Value = 0.000000
Max Vox Value = 11.000000"
}
}
module IntervalThreshold {
internal {
frame = "149 325 136 56"
moduleGroupName = scan_5
windows {
window _default {
geometry = "549 112 437 421"
sizeHint = "437 421"
wasOpen = no
}
}
}
fields {
instanceName = IntervalThreshold9
lowerType = UserDef
innerType = UserDef
upperType = UserDef
centerWidthSet = FALSE
threshCenter = 8
threshWidth = 0
threshMin = 8
threshMax = 8
lowerUserValue = 0
innerUserValue = 1
upperUserValue = 0
changeMinMax = FALSE
changedMin = 0
changedMax = 1000
}
}
module AddImagesExample {
internal {
frame = "197 189 152 56"
moduleGroupName = scan_5
windows {
window _default {
geometry = "397 278 166 28"
sizeHint = "166 28"
wasOpen = no
}
}
}
fields {
instanceName = AddImagesExample4
offsetVoxelValue = 0
}
}
module GaussSmoothing {
internal {
frame = "-19 165 168 72"
moduleGroupName = scan_5
showNetworkPanel = true
windows {
window _default {
geometry = "403 170 154 245"
sizeHint = "154 245"
wasOpen = no
}
}
}
fields {
instanceName = GaussSmoothing4
sigma = 2
unit = voxel
xDim = TRUE
yDim = TRUE
zDim = TRUE
cDim = FALSE
tDim = FALSE
uDim = FALSE
useApprox = TRUE
autoUpdate = TRUE
}
}
module CalculateGradient {
internal {
frame = "77 93 136 56"
moduleGroupName = scan_5
windows {
window _default {
geometry = "160 97 343 440"
sizeHint = "266 440"
wasOpen = no
}
}
}
fields {
instanceName = CalculateGradient4
x_Derivative = TRUE
y_Derivative = TRUE
z_Derivative = FALSE
c_Derivative = FALSE
t_Derivative = FALSE
u_Derivative = FALSE
c_VoxelSize = 1
t_VoxelSize = 1
u_VoxelSize = 1
gradientMode = Max
gradientType = Central
edgeMode = Const
stepWidth = 2
enhanceMode = None
estRadius = 0
enhanceFactor = 1.3
enhanceWidth = 0
status = ""
}
}
module VTKToMLImage {
internal {
frame = "-1941 1094 128 56"
moduleGroupName = scan_6
windows {
window _default {
geometry = "290 45 529 693"
sizeHint = "509 748"
wasOpen = no
}
}
}
fields {
instanceName = VTKToMLImage5
convert2CompsTo = Complex
convert3CompsTo = Vec3
convert4CompsTo = Mat2
convert6CompsTo = Vec6
convert9CompsTo = Mat3
convert16CompsTo = Mat4
convert25CompsTo = Mat5
convert36CompsTo = Mat6
dirCosines = "1 0 0 0
0 1 0 0
0 0 1 0
0 0 0 1"
useDirCosines = FALSE
adaptOriginToVTKExtent = TRUE
status = "Valid vtkImageData connected"
imgInfo = "# Cells = 56428993
# Points = 56873096
# Components = 1
Extent = 362 x 434 x 362
Scalar Type = unsigned char(3)
Spacing = 0.500000 x 0.500000 x 0.500000
Origin = -90.250000 x -126.250000 x -72.250000
Min Vox Value = 0.000000
Max Vox Value = 11.000000"
}
}
module IntervalThreshold {
internal {
frame = "-2029 1030 144 56"
moduleGroupName = scan_6
windows {
window _default {
geometry = "218 92 437 421"
sizeHint = "437 421"
wasOpen = no
}
}
}
fields {
instanceName = IntervalThreshold10
lowerType = UserDef
innerType = UserDef
upperType = UserDef
centerWidthSet = FALSE
threshCenter = 2.5
threshWidth = 1
threshMin = 2
threshMax = 3
lowerUserValue = 0
innerUserValue = 1
upperUserValue = 0
changeMinMax = TRUE
changedMin = 1
changedMax = 3
}
}
module IntervalThreshold {
internal {
frame = "-1797 1038 144 56"
moduleGroupName = scan_6
windows {
window _default {
geometry = "549 112 437 421"
sizeHint = "437 421"
wasOpen = no
}
}
}
fields {
instanceName = IntervalThreshold11
lowerType = UserDef
innerType = UserDef
upperType = UserDef
centerWidthSet = FALSE
threshCenter = 8
threshWidth = 0
threshMin = 8
threshMax = 8
lowerUserValue = 0
innerUserValue = 1
upperUserValue = 0
changeMinMax = FALSE
changedMin = 0
changedMax = 1000
}
}
module AddImagesExample {
internal {
frame = "-1745 902 152 56"
moduleGroupName = scan_6
windows {
window _default {
geometry = "397 278 166 28"
sizeHint = "166 28"
wasOpen = no
}
}
}
fields {
instanceName = AddImagesExample5
offsetVoxelValue = 0
}
}
module GaussSmoothing {
internal {
frame = "-1961 878 168 72"
moduleGroupName = scan_6
showNetworkPanel = true
windows {
window _default {
geometry = "403 170 154 245"
sizeHint = "154 245"
wasOpen = no
}
}
}
fields {
instanceName = GaussSmoothing5
sigma = 2
unit = voxel
xDim = TRUE
yDim = TRUE
zDim = TRUE
cDim = FALSE
tDim = FALSE
uDim = FALSE
useApprox = TRUE
autoUpdate = TRUE
}
}
module CalculateGradient {
internal {
frame = "-1865 806 136 56"
moduleGroupName = scan_6
windows {
window _default {
geometry = "160 97 343 440"
sizeHint = "266 440"
wasOpen = no
}
}
}
fields {
instanceName = CalculateGradient5
x_Derivative = TRUE
y_Derivative = TRUE
z_Derivative = FALSE
c_Derivative = FALSE
t_Derivative = FALSE
u_Derivative = FALSE
c_VoxelSize = 1
t_VoxelSize = 1
u_VoxelSize = 1
gradientMode = Max
gradientType = Central
edgeMode = Const
stepWidth = 2
enhanceMode = None
estRadius = 0
enhanceFactor = 1.3
enhanceWidth = 0
status = ""
}
}
module VTKToMLImage {
internal {
frame = "-1428 1085 128 56"
moduleGroupName = scan_7
windows {
window _default {
geometry = "290 45 529 693"
sizeHint = "509 748"
wasOpen = no
}
}
}
fields {
instanceName = VTKToMLImage6
convert2CompsTo = Complex
convert3CompsTo = Vec3
convert4CompsTo = Mat2
convert6CompsTo = Vec6
convert9CompsTo = Mat3
convert16CompsTo = Mat4
convert25CompsTo = Mat5
convert36CompsTo = Mat6
dirCosines = "1 0 0 0
0 1 0 0
0 0 1 0
0 0 0 1"
useDirCosines = FALSE
adaptOriginToVTKExtent = TRUE
status = "Valid vtkImageData connected"
imgInfo = "# Cells = 56428993
# Points = 56873096
# Components = 1
Extent = 362 x 434 x 362
Scalar Type = unsigned char(3)
Spacing = 0.500000 x 0.500000 x 0.500000
Origin = -90.250000 x -126.250000 x -72.250000
Min Vox Value = 0.000000
Max Vox Value = 11.000000"
}
}
module IntervalThreshold {
internal {
frame = "-1516 1029 144 56"
moduleGroupName = scan_7
windows {
window _default {
geometry = "218 92 437 421"
sizeHint = "437 421"
wasOpen = no
}
}
}
fields {
instanceName = IntervalThreshold12
lowerType = UserDef
innerType = UserDef
upperType = UserDef
centerWidthSet = FALSE
threshCenter = 2.5
threshWidth = 1
threshMin = 2
threshMax = 3
lowerUserValue = 0
innerUserValue = 1
upperUserValue = 0
changeMinMax = TRUE
changedMin = 1
changedMax = 3
}
}
module IntervalThreshold {
internal {
frame = "-1284 1029 144 56"
moduleGroupName = scan_7
windows {
window _default {
geometry = "549 112 437 421"
sizeHint = "437 421"
wasOpen = no
}
}
}
fields {
instanceName = IntervalThreshold13
lowerType = UserDef
innerType = UserDef
upperType = UserDef
centerWidthSet = FALSE
threshCenter = 8
threshWidth = 0
threshMin = 8
threshMax = 8
lowerUserValue = 0
innerUserValue = 1
upperUserValue = 0
changeMinMax = FALSE
changedMin = 0
changedMax = 1000
}
}
module AddImagesExample {
internal {
frame = "-1232 901 152 56"
moduleGroupName = scan_7
windows {
window _default {
geometry = "397 278 166 28"
sizeHint = "166 28"
wasOpen = no
}
}
}
fields {
instanceName = AddImagesExample6
offsetVoxelValue = 0
}
}
module GaussSmoothing {
internal {
frame = "-1448 877 168 72"
moduleGroupName = scan_7
showNetworkPanel = true
windows {
window _default {
geometry = "403 170 154 245"
sizeHint = "154 245"
wasOpen = no
}
}
}
fields {
instanceName = GaussSmoothing6
sigma = 2
unit = voxel
xDim = TRUE
yDim = TRUE
zDim = TRUE
cDim = FALSE
tDim = FALSE
uDim = FALSE
useApprox = TRUE
autoUpdate = TRUE
}
}
module CalculateGradient {
internal {
frame = "-1352 805 136 56"
moduleGroupName = scan_7
windows {
window _default {
geometry = "160 97 343 440"
sizeHint = "266 440"
wasOpen = no
}
}
}
fields {
instanceName = CalculateGradient6
x_Derivative = TRUE
y_Derivative = TRUE
z_Derivative = FALSE
c_Derivative = FALSE
t_Derivative = FALSE
u_Derivative = FALSE
c_VoxelSize = 1
t_VoxelSize = 1
u_VoxelSize = 1
gradientMode = Max
gradientType = Central
edgeMode = Const
stepWidth = 2
enhanceMode = None
estRadius = 0
enhanceFactor = 1.3
enhanceWidth = 0
status = ""
}
}
module VTKToMLImage {
internal {
frame = "-940 1093 128 56"
moduleGroupName = scan_8
windows {
window _default {
geometry = "290 45 529 693"
sizeHint = "509 748"
wasOpen = no
}
}
}
fields {
instanceName = VTKToMLImage7
convert2CompsTo = Complex
convert3CompsTo = Vec3
convert4CompsTo = Mat2
convert6CompsTo = Vec6
convert9CompsTo = Mat3
convert16CompsTo = Mat4
convert25CompsTo = Mat5
convert36CompsTo = Mat6
dirCosines = "1 0 0 0
0 1 0 0
0 0 1 0
0 0 0 1"
useDirCosines = FALSE
adaptOriginToVTKExtent = TRUE
status = "Valid vtkImageData connected"
imgInfo = "# Cells = 56428993
# Points = 56873096
# Components = 1
Extent = 362 x 434 x 362
Scalar Type = unsigned char(3)
Spacing = 0.500000 x 0.500000 x 0.500000
Origin = -90.250000 x -126.250000 x -72.250000
Min Vox Value = 0.000000
Max Vox Value = 11.000000"
}
}
module IntervalThreshold {
internal {
frame = "-1028 1029 144 56"
moduleGroupName = scan_8
windows {
window _default {
geometry = "218 92 437 421"
sizeHint = "437 421"
wasOpen = no
}
}
}
fields {
instanceName = IntervalThreshold14
lowerType = UserDef
innerType = UserDef
upperType = UserDef
centerWidthSet = FALSE
threshCenter = 2.5
threshWidth = 1
threshMin = 2
threshMax = 3
lowerUserValue = 0
innerUserValue = 1
upperUserValue = 0
changeMinMax = TRUE
changedMin = 1
changedMax = 3
}
}
module IntervalThreshold {
internal {
frame = "-796 1037 144 56"
moduleGroupName = scan_8
windows {
window _default {
geometry = "549 112 437 421"
sizeHint = "437 421"
wasOpen = no
}
}
}