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case-tophat/accepted_hits.bam': No such file or directory #2

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geng-lee opened this issue Nov 14, 2023 · 0 comments
Open

case-tophat/accepted_hits.bam': No such file or directory #2

geng-lee opened this issue Nov 14, 2023 · 0 comments

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@geng-lee
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Total time for backward call to driver() for mirror index: 00:00:01
[main_samview] region "case" specifies an unknown reference name. Continue anyway.
mv: cannot stat './/PCBP1_PSI/case-tophat/accepted_hits.bam': No such file or directory
mv: cannot stat './/PCBP1_PSI/case-tophat/junctions.bed': No such file or directory
[E::hts_open_format] Failed to open file PCBP1_PSI-out/S1-case.bam
samtools index: failed to open "PCBP1_PSI-out/S1-case.bam": No such file or directory
Failed to open BAM file PCBP1_PSI-out/-case.bam
sed: can't read PCBP1_PSI-out/
-case-junctions.bed: No such file or directory
sed: can't read PCBP1_PSI-out/*-case-junctions.bed: No such file or directory

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