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@jbloomlab

jbloomlab

Jesse Bloom's lab GitHub account

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  1. phydms phydms Public

    phylogenetic analyses informed by deep mutational scanning data

    HTML 14 4

  2. dms_tools2 dms_tools2 Public

    software for the analysis and visualization of deep mutational scanning data

    Python 31 20

  3. dmslogo dmslogo Public

    draw sequence logos tailored to deep mutational scanning (DMS) data

    Jupyter Notebook 12 1

  4. neutcurve neutcurve Public

    Fit and plot neutralization curves

    Jupyter Notebook 9 3

Repositories

Showing 10 of 135 repositories
  • SARS2-RBD-escape-calc Public

    SARS-CoV-2 RBD antibody escape calculator

    jbloomlab/SARS2-RBD-escape-calc’s past year of commit activity
    Jupyter Notebook 11 GPL-3.0 2 0 0 Updated Sep 27, 2024
  • Flu-HA-H5-2.3.4.4-DMS-informed-surveillance Public

    Deep mutational scanning phenotypes of clade 2.3.4.4b influenza H5 HA

    jbloomlab/Flu-HA-H5-2.3.4.4-DMS-informed-surveillance’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Sep 26, 2024
  • jbloomlab.github.io Public

    A website for the Bloom lab

    jbloomlab/jbloomlab.github.io’s past year of commit activity
    Vue 0 0 0 0 Updated Sep 24, 2024
  • flu_seqneut_DRIVE_2021-22_repeat_vax Public

    sequencing-based neutralization assays with H1N1 library against 2021-2022 DRIVE sera

    jbloomlab/flu_seqneut_DRIVE_2021-22_repeat_vax’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 24, 2024
  • seqneut-pipeline Public

    Pipeline for analyzing sequencing-based neutralization assays

    jbloomlab/seqneut-pipeline’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Sep 24, 2024
  • neutcurve Public

    Fit and plot neutralization curves

    jbloomlab/neutcurve’s past year of commit activity
    Jupyter Notebook 9 GPL-3.0 3 0 0 Updated Sep 24, 2024
  • SARS2-spike-predictor-phenos Public

    SARS-CoV-2 spike phenotypes (from DMS and other sources) potentially useful for predicting evolution

    jbloomlab/SARS2-spike-predictor-phenos’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 1 Updated Sep 23, 2024
  • polyclonal Public

    Model mutational escape from polyclonal antibodies.

    jbloomlab/polyclonal’s past year of commit activity
    Jupyter Notebook 3 0 3 0 Updated Sep 21, 2024
  • bench-to-byte Public

    A biologist's guide to crafting quality code

    jbloomlab/bench-to-byte’s past year of commit activity
    JavaScript 1 0 0 0 Updated Sep 20, 2024
  • binarymap Public

    Binary representations of protein/nucleotide sequences.

    jbloomlab/binarymap’s past year of commit activity
    Python 0 1 0 0 Updated Sep 20, 2024
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