From 6ca53b72b8b98dc14f78965d28b5ace897414227 Mon Sep 17 00:00:00 2001
From: Jennifer Lu <jlu26@jhmi.edu>
Date: Mon, 10 Sep 2018 14:56:08 -0400
Subject: [PATCH] Fixing README.md

---
 README.md | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/README.md b/README.md
index 1f332a9..f2bba69 100644
--- a/README.md
+++ b/README.md
@@ -120,10 +120,12 @@ The kmer distribution file is generated using the following command line:
 ## Step 2: Run Kraken 1.0 or Kraken 2.0 AND Generate a report file 
 
 Kraken 1.0 requires a 2-step process to generate the report file needed by Bracken
+        
         kraken --db ${KRAKEN_DB} --threads ${THREADS} ${SAMPLE}.fq > ${SAMPLE}.kraken
         kraken-report --db ${KRAKEN_DB} ${SAMPLE}.kraken > ${SAMPLE}.kreport 
 
 Kraken 2.0 requires the addition of the --report flag 
+        
         kraken2 --db ${KRAKEN_DB} --threads ${THREADS} --report ${SAMPLE}.kreport ${SAMPLE}.fq > ${SAMPLE}.kraken
 
 ## Step 3: Run Bracken for Abundance Estimation