From 4df609ecc84294d571aae9c07c3d161032e78e7d Mon Sep 17 00:00:00 2001
From: jfgrimm <jasper.grimm@york.ac.uk>
Date: Wed, 6 Dec 2023 16:26:22 +0000
Subject: [PATCH] adding easyconfigs: CellRanger-7.2.0.eb

---
 .../c/CellRanger/CellRanger-7.2.0.eb          | 31 +++++++++++++++++++
 1 file changed, 31 insertions(+)
 create mode 100644 easybuild/easyconfigs/c/CellRanger/CellRanger-7.2.0.eb

diff --git a/easybuild/easyconfigs/c/CellRanger/CellRanger-7.2.0.eb b/easybuild/easyconfigs/c/CellRanger/CellRanger-7.2.0.eb
new file mode 100644
index 00000000000..f02ee42a839
--- /dev/null
+++ b/easybuild/easyconfigs/c/CellRanger/CellRanger-7.2.0.eb
@@ -0,0 +1,31 @@
+# The STAR binary included in this version has been vectorized with AVX
+# hence it is not recommended for systems that do not support it.
+
+easyblock = 'Tarball'
+
+name = 'CellRanger'
+version = '7.2.0'
+
+homepage = 'https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/what-is-cell-ranger'
+description = """Cell Ranger is a set of analysis pipelines that process Chromium
+ single-cell RNA-seq output to align reads, generate gene-cell matrices and perform
+ clustering and gene expression analysis."""
+
+toolchain = SYSTEM
+
+download_instructions = """
+Download manually from https://support.10xgenomics.com/single-cell-gene-expression/software/downloads/latest
+"""
+sources = [SOURCELOWER_TAR_GZ]
+checksums = ['b092bd4e3ab585ad051a231fbdd8f3f0f5cbcd10f657eeab86bec98cd594502c']
+
+keepsymlinks = True
+
+sanity_check_paths = {
+    'files': ['bin/cellranger'],
+    'dirs': ['bin/rna', 'bin/tenkit'],
+}
+
+sanity_check_commands = ['cellranger testrun --id=tiny']
+
+moduleclass = 'bio'