test_backend_e2e_and_unit_and_qc.yml

# Test - Backend - E2E and unit tests and QC
# todo: Add 'qc' parts eventually to this, or rather, codestyle (e.g. black, flake8, pylint, docstyle, etc.)
# Built w/ inspiration from: https://docs.github.com/en/actions/guides/building-and-testing-python

name: Test - Backend - E2E and unit tests and QC

on:
  workflow_dispatch:
  push:
    branches: [ develop, main ]
  pull_request:
    branches: [ develop, main ]
  schedule:
    - cron: '0 14 * * *'  # every day 2pm GMT (9/10am EST/EDT)

jobs:
  test:
    strategy:
      fail-fast: false
      matrix:
#        os: [ ubuntu-latest, windows-latest ]
        os: [ ubuntu-latest ]
#        python-version: [ "3.10", "3.11" ]
        python-version: [ "3.10" ]
    runs-on: ${{ matrix.os }}
    steps:
      - name: Check out repository
        uses: actions/checkout@v3
        with:
          submodules: true
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v4
        with:
          python-version: ${{ matrix.python-version }}
      - name: 'Create env file'
        run: |
          mkdir env
          echo "${{ secrets.ENV_FILE }}" > env/.env
      - name: Create and start virtual environment
        run: |
          python3 -m venv venv
          source venv/bin/activate
      - name: Install dependencies
        run: |
          # Reactivate install upgrades of pip, wheel, &/or setuptools if needed
          # python -m pip install --upgrade pip
          # pip install --upgrade wheel
          # pip install --upgrade setuptools
          # VS Hub SDK w/ OAuth disabled: https://github.com/jhu-bids/TermHub/issues/863
          # TOKEN=$(grep '^PALANTIR_ENCLAVE_AUTHENTICATION_BEARER_TOKEN=' env/.env | cut -d'=' -f2)
          # python3 -m pip install vshub_sdk --upgrade --extra-index-url "https://:${TOKEN}@unite.nih.gov/artifacts/api/repositories/ri.artifacts.main.repository.9bc9cc56-4b8c-4560-9bfb-fba8ade55246/contents/release/pypi/simple" --extra-index-url "https://:${TOKEN}@unite.nih.gov/artifacts/api/repositories/ri.foundry-sdk-asset-bundle.main.artifacts.repository/contents/release/pypi/simple"
          pip install -r requirements.txt
      - name: Run tests
        run: make test-backend