From fb074336dd1265a91d9c7e5a4a31f98f55d1214f Mon Sep 17 00:00:00 2001 From: Merritt-Brian <50592701+Merritt-Brian@users.noreply.github.com> Date: Mon, 24 Jun 2024 15:05:53 -0400 Subject: [PATCH 1/5] Update modules.config --- conf/modules.config | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/conf/modules.config b/conf/modules.config index 1805ae1..6b87a96 100644 --- a/conf/modules.config +++ b/conf/modules.config @@ -88,6 +88,10 @@ process { ext.singularity_pull_docker_container = true errorStrategy = 'ignore' } + withName: MAP_TAXID_ASSEMBLY { + ext.singularity_pull_docker_container = true + errorStrategy = 'ignore' + } withName: ORGANISM_MERGE_REPORT { ext.singularity_pull_docker_container = true errorStrategy = 'ignore' From 881441d1c139f76408a36eb999b336d536e6cc01 Mon Sep 17 00:00:00 2001 From: Merritt-Brian <50592701+Merritt-Brian@users.noreply.github.com> Date: Wed, 26 Jun 2024 09:58:45 -0400 Subject: [PATCH 2/5] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 33bd8cf..c6342ed 100644 --- a/README.md +++ b/README.md @@ -12,7 +12,7 @@ ## About -TaxTriage a flexible, containerized bioinformatics pipeline for identification of pathogens within short- or long-read metagenomic sequence data, generated from complex samples/specimens (e.g., respiratory swabs, lesion swabs, whole blood). The workflow includes various software packages to perform quality control, classification, read mapping, as well as generation of confidence metrics and a final report listing anticipated pathogens of relevance. +TaxTriage a flexible, containerized bioinformatics pipeline for identification of pathogens within short- (Illumina) or long-read (ONT, PacBio) metagenomic sequence data, generated from complex samples/specimens (e.g., respiratory swabs, lesion swabs, whole blood). The workflow includes various software packages to perform quality control, classification, read mapping, as well as generation of confidence metrics and a final report listing anticipated pathogens of relevance. ![](assets/taxtriage_schematics.png) From 19f84d107d331d66800a2f800da9dd7ec27a8e66 Mon Sep 17 00:00:00 2001 From: Merritt-Brian <50592701+Merritt-Brian@users.noreply.github.com> Date: Wed, 26 Jun 2024 09:59:35 -0400 Subject: [PATCH 3/5] Update usage.md --- docs/usage.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/usage.md b/docs/usage.md index 43c9d41..a93e25a 100644 --- a/docs/usage.md +++ b/docs/usage.md @@ -76,7 +76,7 @@ Unless you are using Seqera, most of the temporary directories and final outputs | Column | Description | | -------------------- | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | | `sample` | **MANDATORY** Custom sample name. This entry will be identical for multiple sequencing libraries/runs from the same sample. Spaces in sample names are automatically converted to underscores (`_`). | -| `platform` | **MANDATORY** Platform used, [ILLUMINA, OXFORD]. If omitted or left blank, assumes ILLUMINA | +| `platform` | **MANDATORY** Platform used, [ILLUMINA, OXFORD]. If omitted or left blank, assumes ILLUMINA. If using PacBio, specify OXFORD. An additional update in the near future will allow PACBIO as an input but has not yet been integrated. | | `fastq_1` | **MANDATORY** Full path to FastQ file for Illumina short reads 1 OR OXFORD reads. File MUST be gzipped and have the extension ".fastq.gz" or ".fq.gz". | | `fastq_2` | OPTIONAL Full path to FastQ file for Illumina short reads 2. File MUST be gzipped and have the extension ".fastq.gz" or ".fq.gz". | | `trim` | OPTIONAL TRUE/FALSE, do you want to run trimming on the sample? | From 59b22dc3fc33f6d209fbd6b0e0cc78e5727a775d Mon Sep 17 00:00:00 2001 From: Merritt-Brian <50592701+Merritt-Brian@users.noreply.github.com> Date: Wed, 26 Jun 2024 15:19:00 -0400 Subject: [PATCH 4/5] Update pathogen_sheet.csv --- assets/pathogen_sheet.csv | 1586 ++++++++++++++++++------------------- 1 file changed, 793 insertions(+), 793 deletions(-) diff --git a/assets/pathogen_sheet.csv b/assets/pathogen_sheet.csv index 2b7e6ce..c24872f 100644 --- a/assets/pathogen_sheet.csv +++ b/assets/pathogen_sheet.csv @@ -9,7 +9,7 @@ Erysipelatoclostridium ramosum,1547,commensal,blood,"gut, stool",putative,,,"Zak Laribacter hongkongensis,168471,potential,"blood, stool",,established,,,"Yuen, Kwok-Yung, et al. ""Laribacter hongkongensis gen. nov., sp. nov., a novel gram-negative bacterium isolated from a cirrhotic patient with bacteremia and empyema.""Journal of clinical microbiology39.12 (2001): 4227-4232.", Staphylococcus gallinarum,1293,potential,blood,oral,established,,,"Yu, Daojun, et al. ""Staphylococcus gallinarum bacteremia in a patient with chronic hepatitis b virus infection.""Annals of Clinical & Laboratory Science38.4 (2008): 401-404.", Bacteroides salyersiae,291644,potential,gut,gut,putative,,,"Yoon, Jihoon G., et al. ""Bacteroides nordii and Bacteroides salyersiae Isolated from Post-operative Peritonitis Patients.""Laboratory Medicine Online6.2 (2016): 111-115.", -Fusarium solani,169388,opportunistic,"cornea, blood",,established,,,"Yera, H., et al. ""Mycetoma of the foot caused by Fusarium solani: identification of the etiologic agent by DNA sequencing.""Journal of clinical microbiology41.4 (2003): 1805-1808.", +Fusarium solani,169388,opportunistic,"cornea, blood",,established,,,"Yera, H., et al. ""Mycetoma of the foot caused by Fusarium solani: identification of the etiologic agent by DNA sequencing.""ÊJournal of clinical microbiologyÊ41.4 (2003): 1805-1808.", Mycoplasma arginini,2094,potential,blood,,established,,,"Yechouron, Ariane, et al. ""Fatal septicemia due to Mycoplasma arginini: a new human zoonosis.""Clinical infectious diseases15.3 (1992): 434-438.", Xenophilus aerolatus,452922,potential,blood,,putative,,,"Yau, Yvonne CW, and Elizabeth A. Harvey. ""Xenophilus aerolatus Peritonitis in a Six-Year-Old Boy on Maintenance Peritoneal Dialysis.""Advances in Peritoneal Dialysis27 (2011).", Williamsia serinedens,391736,opportunistic,blood,,putative,,,"Yassin, Atteyet F., et al. ""Perinatal sepsis caused by Williamsia serinedens infection in a 31-year-old pregnant woman.""Journal of clinical microbiology48.7 (2010): 2626-2629.", @@ -37,7 +37,7 @@ Legionella nagasakiensis,535290,,,,putative,,,"Yang, Genyan, et al. ""Legionella Leuconostoc lactis,1246,opportunistic,blood,,established,,,"Yang, C. ""Leuconostoc lactis bacteremia: case report.""Reactions1577 (2015): 245-14.", Neisseria macacae,496,potential,blood,,established,,,"Yamamoto, Yasumasa, et al. ""Neisseria macacae bacteremia: report of two cases with a literature review.""BMC Infectious Diseases20.1 (2020): 1-4.", Pantoea calida,665913,potential,blood,,established,,,"Yamada, Kageto, et al. ""Pantoea calida bacteremia in an adult with end-stage stomach cancer under inpatient care.""Journal of Infection and Chemotherapy23.6 (2017): 407-409.", -Mycoplasma penetrans,28227,primary,"blood, resp, stool",,established,,,"Yanez, Antonio, et al. ""Mycoplasma penetrans bacteremia and primary antiphospholipid syndrome.""Emerging Infectious Diseases5.1 (1999): 164.", +Mycoplasma penetrans,28227,primary,"blood, resp, stool",,established,,,"Yanez, Antonio, et al. ""Mycoplasma penetrans bacteremia and primary antiphospholipid syndrome.""ÊEmerging Infectious DiseasesÊ5.1 (1999): 164.", Treponema maltophilum,1125699,potential,oral,,established,,,"Wyss, Choi, et al. ""Treponema maltophilum sp. nov., a small oral spirochete isolated from human periodontal lesions.""International Journal of Systematic and Evolutionary Microbiology46.3 (1996): 745-752.", Treponema putidum,221027,,,,putative,,,"Wyss, C., et al. ""Treponema putidum sp. nov., a medium-sized proteolytic spirochaete isolated from lesions of human periodontitis and acute necrotizing ulcerative gingivitis.""International journal of systematic and evolutionary microbiology54.4 (2004): 1117-1122.", Treponema parvum,138851,potential,oral,,established,,,"Wyss, C., et al. ""Treponema parvum sp. nov., a small, glucoronic or galacturonic acid-dependent oral spirochaete from lesions of human periodontitis and acute necrotizing ulcerative gingivitis.""International journal of systematic and evolutionary microbiology51.3 (2001): 955-962.", @@ -47,17 +47,17 @@ Arcobacter skirrowii,28200,,,,putative,,,"Wybo, Ingrid, et al. ""Isolation of Ar Propionibacterium propionicum,1750,commensal,abscess,"skin, nasal ",established,,,"Wunderink, Herman F., et al. ""Pelvic actinomycosis-like disease due to Propionibacterium propionicum after hysteroscopic removal of an intrauterine device.""Journal of clinical microbiology49.1 (2011): 466-468.", Staphylococcus saccharolyticus,33028,commensal,blood,skin,established,,,"Wu, Xiaomei, Chunyan Yu, and Xinyan Wang. ""A case of Staphylococcus saccharolyticus pneumonia.""International Journal of Infectious Diseases13.2 (2009): e43-e46.", Enterobacter huaxiensis,2494702,,,,putative,,,"Wu, Wenjing, et al. ""Enterobacter huaxiensis sp. nov. and Enterobacter chuandaensis sp. nov., recovered from human blood.""International journal of systematic and evolutionary microbiology69.3 (2019): 708-714.", -Neisseria dumasiana,1931275,primary,skin,,established,,,"Wroblewski, Danielle, et al. ""Neisseria dumasiana sp. nov. from human sputum and a dogs mouth.""International Journal of Systematic and Evolutionary Microbiology67.11 (2017): 4304-4310.", +Neisseria dumasiana,1931275,primary,skin,,established,,,"Wroblewski, Danielle, et al. ""Neisseria dumasiana sp. nov. from human sputum and a dogs mouth.""ÊInternational Journal of Systematic and Evolutionary MicrobiologyÊ67.11 (2017): 4304-4310.", Clostridium carnis,1530,,,,putative,,,"Wort, A. J., and R. L. Ozere. ""Characteristics of a strain of Clostridium carnis causing septicaemia in a young infant.""Journal of clinical pathology29.11 (1976): 1011-1013.", Anaerostipes caccae,105841,potential,,stool,established,,,"Workneh, Meklit, et al. ""Bypass graft infection and bacteremia caused by Anaerostipes caccae: First report of human infection caused by a recently described gut anaerobe.""Anaerobe42 (2016): 98-100.", -Pseudomonas poae,200451,,,,putative,,,"Woodring, Therese S., and John J. Farrell. ""Pseudomonas poae-associated fatal septic transfusion reaction, Peoria, Illinois, USA, 2017.""Emerging Infectious Diseases25.8 (2019): 1445.", +Pseudomonas poae,200451,,,,putative,,,"Woodring, Therese S., and John J. Farrell. ""Pseudomonas poae-associated fatal septic transfusion reaction, Peoria, Illinois, USA, 2017.""ÊEmerging Infectious DiseasesÊ25.8 (2019): 1445.", Streptococcus sinensis,176090,commensal,blood,oral,established,,,"Woo, Patrick CY, et al. ""Streptococcus sinensis sp. nov., a novel species isolated from a patient with infective endocarditis.""Journal of Clinical Microbiology40.3 (2002): 805-810.", Streptobacillus hongkongensis,1162717,,,,putative,,,"Woo, Patrick CY, et al. ""Streptobacillus hongkongensis sp. nov., isolated from patients with quinsy and septic arthritis, and emended descriptions of the genus Streptobacillus and Streptobacillusmoniliformis.""International journal of systematic and evolutionary microbiology64.Pt_9 (2014): 3034-3039.", Leptotrichia hongkongensis,554406,,,,putative,,,"Woo, Patrick CY, et al. ""Leptotrichia hongkongensis sp. nov., a novel Leptotrichia species with the oral cavity as its natural reservoir.""Journal of Zhejiang University SCIENCE B11.6 (2010): 391-401.", Gordonibacter pamelaeae,471189,,,,putative,,,"Woo, Patrick CY, et al. ""First report of Gordonibacter pamelaeae bacteremia.""Journal of clinical microbiology48.1 (2010): 319-322.", Sedimentibacter hongkongensis,1960295,,,,putative,,,"Woo, Patrick CY, et al. ""Bacteremia in a patient with colonic carcinoma caused by a novel Sedimentibacter species: Sedimentibacter hongkongensis sp. nov.""Diagnostic microbiology and infectious disease50.2 (2004): 81-87.", Alkanindiges hongkongensis,208968,potential,abscess,,putative,,,"Woo, Patrick CY, et al. ""Alkanindiges hongkongensis sp. nov. A novel Alkanindiges species isolated from a patient with parotid abscess.""Systematic and applied microbiology28.4 (2005): 316-322.", -Actinomyces hongkongensis,178339,potential,abscess,,putative,,,"Woo, Patrick CY, et al. ""Actinomyces hongkongensis sp. nov.-a novel Actinomyces species isolated from a patient with pelvic actinomycosis.""Systematic and applied microbiology26.4 (2003): 518-522.", +Actinomyces hongkongensis,178339,potential,abscess,,putative,,,"Woo, Patrick CY, et al. ""Actinomyces hongkongensis sp. nov.-a novel Actinomyces species isolated from a patient with pelvic actinomycosis.""ÊSystematic and applied microbiologyÊ26.4 (2003): 518-522.", Mycobacterium farcinogenes,1802,potential,,,established,,,"Wong, Tak-Chuen, et al. ""Mycobacterium farcinogenes infection after total hip arthroplasty.""The Journal of arthroplasty20.5 (2005): 684-687.", Neisseria shayeganii,607712,,,,putative,,,"Wolfgang, William J., et al. ""Neisseria wadsworthii sp. nov. and Neisseria shayeganii sp. nov., isolated from clinical specimens.""International journal of systematic and evolutionary microbiology61.1 (2011): 91-98.", Neisseria wadsworthii,607711,,,,putative,,,"Wolfgang, William J., et al. ""Neisseria wadsworthii sp. nov. and Neisseria shayeganii sp. nov., isolated from clinical specimens.""International journal of systematic and evolutionary microbiology61.1 (2011): 91-98.", @@ -94,7 +94,7 @@ Brevibacterium sanguinis,232444,potential,blood,skin,established,,,"Wauters, Geo Ralstonia gilardii,82541,opportunistic,blood,stool,established,,,"Wauters, Georges, et al. ""Case of catheter sepsis with Ralstonia gilardii in a child with acute lymphoblastic leukemia.""Journal of clinical microbiology39.12 (2001): 4583-4584.", Brevibacterium paucivorans,170994,,,,putative,,,"Wauters, Georges, et al. ""Brevibacterium paucivorans sp. nov., from human clinical specimens.""International journal of systematic and evolutionary microbiology51.5 (2001): 1703-1707.", Brevibacterium lutescens,1701,,,,putative,,,"Wauters, Georges, et al. ""Brevibacterium lutescens sp. nov., from human and environmental samples.""International journal of systematic and evolutionary microbiology53.5 (2003): 1321-1325.", -Corynebacterium simulans,146827,opportunistic,blood,skin,established,,,"Wattiau, Pierre, Michele Janssens, and Georges Wauters. ""Corynebacterium simulans sp. nov., a non-lipophilic, fermentative Corynebacterium.""International journal of systematic and evolutionary microbiology50.1 (2000): 347-353.", +Corynebacterium simulans,146827,opportunistic,blood,skin,established,,,"Wattiau, Pierre, Michele Janssens, and Georges Wauters. ""Corynebacterium simulans sp. nov., a non-lipophilic, fermentative Corynebacterium.""ÊInternational journal of systematic and evolutionary microbiologyÊ50.1 (2000): 347-353.", Mycobacterium neoaurum,1795,primary,"blood, resp",,established,,,"Washer, Laraine L., et al. ""Mycobacterium neoaurum bloodstream infection: report of 4 cases and review of the literature.""Clinical Infectious Diseases45.2 (2007): e10-e13.", Clostridium aldenense,29369,primary,blood,,established,,,"Warren, Yumi A., et al. ""Clostridium aldenense sp. nov. and Clostridium citroniae sp. nov. isolated from human clinical infections.""Journal of clinical microbiology44.7 (2006): 2416-2422.", Clostridium citroniae,358743,potential,blood,,established,,,"Warren, Yumi A., et al. ""Clostridium aldenense sp. nov. and Clostridium citroniae sp. nov. isolated from human clinical infections.""Journal of clinical microbiology44.7 (2006): 2416-2422.", @@ -122,7 +122,7 @@ Burkholderia lata,482957,opportunistic,oral,,established,,,"Vanlaere, Elke, et a Burkholderia ubonensis,101571,,,,putative,,,"Vanlaere, Elke, et al. ""Burkholderia latens sp. nov., Burkholderia diffusa sp. nov., Burkholderia arboris sp. nov., Burkholderia seminalis sp. nov. and Burkholderia metallica sp. nov., novel species within the Burkholderia cepacia complex.""International Journal of Systematic and Evolutionary Microbiology58.7 (2008): 1580-1590.", Burkholderia arboris,488730,,,,established,,,"Vanlaere, Elke, et al. ""Burkholderia latens sp. nov., Burkholderia diffusa sp. nov., Burkholderia arboris sp. nov., Burkholderia seminalis sp. nov. and Burkholderia metallica sp. nov., novel species within the Burkholderia cepacia complex.""International Journal of Systematic and Evolutionary Microbiology58.7 (2008): 1580-1590.", Burkholderia diffusa,488732,,,,established,,,"Vanlaere, Elke, et al. ""Burkholderia latens sp. nov., Burkholderia diffusa sp. nov., Burkholderia arboris sp. nov., Burkholderia seminalis sp. nov. and Burkholderia metallica sp. nov., novel species within the Burkholderia cepacia complex.""International Journal of Systematic and Evolutionary Microbiology58.7 (2008): 1580-1590.", -Burkholderia latens,488446,blood,,,established,,,"Vanlaere, Elke, et al. ""Burkholderia latens sp. nov., Burkholderia diffusa sp. nov., Burkholderia arboris sp. nov., Burkholderia seminalis sp. nov. and Burkholderia metallica sp. nov., novel species within the Burkholderia cepacia complex.""International Journal of Systematic and Evolutionary Microbiology58.7 (2008): 1580-1590.", +Burkholderia latens,488446,,blood,,,established,,,"Vanlaere, Elke, et al. ""Burkholderia latens sp. nov., Burkholderia diffusa sp. nov., Burkholderia arboris sp. nov., Burkholderia seminalis sp. nov. and Burkholderia metallica sp. nov., novel species within the Burkholderia cepacia complex.""International Journal of Systematic and Evolutionary Microbiology58.7 (2008): 1580-1590.", Burkholderia metallica,488729,,,,established,,,"Vanlaere, Elke, et al. ""Burkholderia latens sp. nov., Burkholderia diffusa sp. nov., Burkholderia arboris sp. nov., Burkholderia seminalis sp. nov. and Burkholderia metallica sp. nov., novel species within the Burkholderia cepacia complex.""International Journal of Systematic and Evolutionary Microbiology58.7 (2008): 1580-1590.", Burkholderia seminalis,488731,,,,established,,,"Vanlaere, Elke, et al. ""Burkholderia latens sp. nov., Burkholderia diffusa sp. nov., Burkholderia arboris sp. nov., Burkholderia seminalis sp. nov. and Burkholderia metallica sp. nov., novel species within the Burkholderia cepacia complex.""International Journal of Systematic and Evolutionary Microbiology58.7 (2008): 1580-1590.", Ralstonia mannitolytica,105219,opportunistic,blood,,established,,,"Vaneechoutte, Mario, et al. ""One case each of recurrent meningitis and hemoperitoneum infection with Ralstonia mannitolilytica.""Journal of clinical microbiology39.12 (2001): 4588-4590.", @@ -133,7 +133,7 @@ Achromobacter aegrifaciens,1287736,opportunistic,oral,,established,,,"Vandamme, Achromobacter anxifer,1287737,,,,putative,,,"Vandamme, Peter, et al. ""Classification of Achromobacter genogroups 2, 5, 7 and 14 as Achromobacter insuavis sp. nov., Achromobacter aegrifaciens sp. nov., Achromobacter anxifer sp. nov. and Achromobacter dolens sp. nov., respectively.""Systematic and applied microbiology36.7 (2013): 474-482.", Achromobacter dolens,1287738,opportunistic,oral,,established,,,"Vandamme, Peter, et al. ""Classification of Achromobacter genogroups 2, 5, 7 and 14 as Achromobacter insuavis sp. nov., Achromobacter aegrifaciens sp. nov., Achromobacter anxifer sp. nov. and Achromobacter dolens sp. nov., respectively.""Systematic and applied microbiology36.7 (2013): 474-482.", Achromobacter insuavis,1287735,potential,,,established,,,"Vandamme, Peter, et al. ""Classification of Achromobacter genogroups 2, 5, 7 and 14 as Achromobacter insuavis sp. nov., Achromobacter aegrifaciens sp. nov., Achromobacter anxifer sp. nov. and Achromobacter dolens sp. nov., respectively.""Systematic and applied microbiology36.7 (2013): 474-482.", -Burkholderia cenocepacia,36773,opportunistic,blood,,established,,,"Vandamme, Peter, et al. ""Burkholderia cenocepacia sp. nov.-a new twist to an old story.""Research in Microbiology154.2 (2003): 91-96.", +Burkholderia cenocepacia,36773,opportunistic,blood,,established,,,"Vandamme, Peter, et al. ""Burkholderia cenocepacia sp. nov.-a new twist to an old story.""ÊResearch in MicrobiologyÊ154.2 (2003): 91-96.", Burkholderia anthina,179879,,,,putative,,,"Vandamme, Peter, et al. ""Burkholderia anthina sp. nov. and Burkholderia pyrrocinia, two additional Burkholderia cepacia complex bacteria, may confound results of new molecular diagnostic tools.""FEMS Immunology & Medical Microbiology33.2 (2002): 143-149.", Achromobacter mucicolens,1389922,opportunistic,"blood, oral",,established,,,"Vandamme, Peter, et al. ""Achromobacter animicus sp. nov., Achromobacter mucicolens sp. nov., Achromobacter pulmonis sp. nov. and Achromobacter spiritinus sp. nov., from human clinical samples.""Systematic and applied microbiology36.1 (2013): 1-10.", Achromobacter pulmonis,1389932,opportunistic,oral,,established,,,"Vandamme, Peter, et al. ""Achromobacter animicus sp. nov., Achromobacter mucicolens sp. nov., Achromobacter pulmonis sp. nov. and Achromobacter spiritinus sp. nov., from human clinical samples.""Systematic and applied microbiology36.1 (2013): 1-10.", @@ -156,7 +156,7 @@ Murdochiella asaccharolytica,507844,potential,blood,,putative,,,"Ulger-Toprak, N Gemella asaccharolytica,502393,potential,,,established,,,"Ulger-Toprak, Nurver, et al. ""Gemella asaccharolytica sp. nov., isolated from human clinical specimens.""International journal of systematic and evolutionary microbiology60.5 (2010): 1023-1026.", Enterococcus gilvus,160453,,,,putative,,,"Tyrrell, Gregory J., et al. ""Enterococcus gilvus sp. nov. and Enterococcus pallens sp. nov. isolated from human clinical specimens.""Journal of clinical microbiology40.4 (2002): 1140-1145.", Enterococcus pallens,160454,,,,putative,,,"Tyrrell, Gregory J., et al. ""Enterococcus gilvus sp. nov. and Enterococcus pallens sp. nov. isolated from human clinical specimens.""Journal of clinical microbiology40.4 (2002): 1140-1145.", -Asaia bogorensis,91915,potential,blood,,established,,,"Tuuminen, Tamara, Terhi Heinasmaki, and Tuija Kerttula. ""First report of bacteremia by Asaia bogorensis, in a patient with a history of intravenous-drug abuse.""Journal of clinical microbiology44.8 (2006): 3048-3050.", +Asaia bogorensis,91915,potential,blood,,established,,,"Tuuminen, Tamara, Terhi Heinasmaki, and Tuija Kerttula. ""First report of bacteremia by Asaia bogorensis, in a patient with a history of intravenous-drug abuse.""ÊJournal of clinical microbiologyÊ44.8 (2006): 3048-3050.", Mycobacterium lacus,169765,,,,putative,,,"Turenne, Christine, et al. ""Mycobacterium lacus sp. nov., a novel slowly growing, non-chromogenic clinical isolate.""International journal of systematic and evolutionary microbiology52.6 (2002): 2135-2140.", Mycobacterium saskatchewanense,220927,,,,putative,,,"Turenne, C. Y., et al. ""Mycobacterium saskatchewanense sp. nov., a novel slowly growing scotochromogenic species from human clinical isolates related to Mycobacterium interjectum and Accuprobe-positive for Mycobacterium avium complex.""International journal of systematic and evolutionary microbiology54.3 (2004): 659-667.", Mycobacterium parascrofulaceum,525368,opportunistic,resp,,established,,,"Turenne, C. Y., et al. ""Mycobacterium parascrofulaceum sp. nov., novel slowly growing, scotochromogenic clinical isolates related to Mycobacterium simiae.""International journal of systematic and evolutionary microbiology54.5 (2004): 1543-1551.", @@ -198,539 +198,539 @@ Tsukamurella conjunctivitidis,2592068,,,,putative,,,"Teng, Jade LL, et al. ""Tsu Tsukamurella sputi,2591848,,,,putative,,,"Teng, Jade LL, et al. ""Tsukamurella asaccharolytica sp. nov., Tsukamurella conjunctivitidis sp. nov. and Tsukamurella sputi sp. nov., isolated from patients with bacteraemia, conjunctivitis and respiratory infection in Hong Kong.""International journal of systematic and evolutionary microbiology70.2 (2020): 995-1006.", Paenibacillus hongkongensis,58172,,,,putative,,,"Teng, J. L. L., et al. ""Pseudobacteraemia in a patient with neutropenic fever caused by a novel paenibacillus species: Paenibacillus hongkongensis sp. nov.""Molecular Pathology56.1 (2003): 29.", Streptococcus lactarius,684066,,,,putative,,,"Tena, Daniel, et al. ""Lactational mastitis caused by Streptococcus lactarius.""Diagnostic microbiology and infectious disease85.4 (2016): 490-492.", -Alcaligenes faecalis,511,opportunistic,"blood, skin, urine",,established,,,"Tena, Daniel, Cristina Fernandez, and Maria R. Lago. ""Alcaligenes faecalis: an unusual cause of skin and soft tissue infection.""Japanese Journal of Infectious Diseases68.2 (2015): 128-130.", +Alcaligenes faecalis,511,opportunistic,"blood, skin, urine",,established,,,"Tena, Daniel, Cristina Fernandez, and Maria R. Lago. ""Alcaligenes faecalis: an unusual cause of skin and soft tissue infection.""ÊJapanese Journal of Infectious DiseasesÊ68.2 (2015): 128-130.", Leptotrichia trevisanii,109328,commensal,blood,"oral, gut",established,,,"Tee, W., et al. ""Bacteremia due to Leptotrichia trevisanii sp. nov.""European journal of clinical microbiology & infectious diseases20.11 (2001): 765-769.", Atopobium vaginae,82135,primary,vaginal,,established,,,"Taylor, Brandie D., et al. ""Toll-like receptor variants and cervical Atopobium vaginae infection in women with pelvic inflammatory disease.""American journal of reproductive immunology79.2 (2018): e12804.", -Finegoldia magna,1260,opportunistic,blood,"oral, gut, skin",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Serratia marcescens,615,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Bacillus subtilis,1423,commensal,nasal,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Leptotrichia buccalis,523794,commensal,blood,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Vibrio cholerae,666,primary,stool,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Bacillus anthracis,1392,primary,"abscess, blood ,resp, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Pseudomonas aeruginosa,287,primary,"abscess, blood, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Borrelia recurrentis,412418,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Chromobacterium violaceum,536,opportunistic,"abscess, blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Clostridium butyricum,1492,commensal,,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Mycobacterium leprae,1769,primary,"abscess, blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Mycobacterium tuberculosis,1773,primary,"blood, resp, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Staphylococcus aureus MRSA-118,1413495,primary,"blood, nasal, oral, abscess",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Staphylococcus aureus MRSA-118,93061,opportunistic,"blood, abscess",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Staphylococcus aureus,1280,opportunistic,"blood, abscess",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Streptococcus pneumoniae,1313,opportunistic,"blood, resp, urine","nasal, resp",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Streptococcus pyogenes,1314,primary,"blood, resp, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Burkholderia mallei,13373,primary,"abscess, blood, resp, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Neisseria gonorrhoeae,485,primary,"blood, urine, gut",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Paenibacillus alvei,44250,opportunistic,abscess,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Proteus mirabilis,584,opportunistic,"blood, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Proteus vulgaris,585,opportunistic,"blood, urine",gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Bacillus mycoides,1405,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Clostridium tetani,1513,primary,"skin, blood",,established,tetanus,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Corynebacterium diphtheriae,1717,primary,"nasal, resp, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Klebsiella oxytoca,571,opportunistic,"blood, resp, urine",gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Klebsiella pneumoniae,573,commensal,"abscess, blood , skin, urine",gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Salmonella typhi,90370,primary,"blood, gut",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Bacillus cereus,1396,primary,"blood, gut",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Clostridium chauvoei,46867,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Pantoea agglomerans,549,opportunistic,"abscess, blood, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Salmonella enteritidis,149539,primary,"blood, gut",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Streptococcus equi,1336,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Clostridium septicum,1504,opportunistic,gut,gut,established,gas gangrene,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Mycobacterium smegmatis,1772,commensal,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Nocardia farcinica,37329,opportunistic,"abscess, blood",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Pseudomonas putida,303,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Yersinia pseudotuberculosis,633,primary,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Bacillus circulans,1397,opportunistic,"abscess, blood",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Enterobacter cloacae,550,opportunistic,"blood, urine",gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Nocardia asteroides,1824,opportunistic,"blood, resp, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Rhodococcus rhodochrous,1829,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Salmonella typhimurium,90370,primary,"blood, gut",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Brucella melitensis,29459,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Salmonella choleraesuis,28901,primary,"blood, gut",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Escherichia coli,562,opportunistic,"blood, urine",gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Pseudomonas fluorescens,294,potential,"blood, resp",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Actinomyces israelii,1659,opportunistic,blood,"oral, gut",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Clostridium botulinum,1491,primary,"blood, stool",,established,botulism,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Corynebacterium pseudodiphthericum,37637,commensal,nasal,resp,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Corynebacterium xerosis,1725,commensal,"abscess, blood","skin, mucus",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Haemophilus influenzae,727,opportunistic,blood,nasal,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Moraxella catarrhalis,480,opportunistic,"blood, sputum",resp,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Pseudomonas stutzeri,2892325,opportunistic,"blood, resp, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Serratia plymuthica,82996,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Streptococcus agalactiae,1311,primary,blood,,established,"altered mental status, chills, fevers",,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Yersinia pestis,632,primary,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Shigella dysenteriae,622,primary,stool,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Bacillus licheniformis,1402,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Bacteroides fragilis,817,commensal,blood,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Clostridium perfringens,1502,primary,"blood, stool",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Clostridium ramosum,1547,commensal,blood,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Pasteurella multocida,747,opportunistic,"blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Brevibacillus brevis,1393,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Clostridium novyi,1542,primary,blood,,established,gas gangrene,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Corynebacterium kutscheri,35755,opportunistic,"blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Cutibacterium acnes,1747,commensal,blood,skin,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Erysipelothrix rhusiopathiae,1648,opportunistic,"blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Moraxella lacunata,477,potential,"abscess, eye",,established,conjunctivitis,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Aeromonas hydrophila,644,oportunistic,"blood, gut",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Bacillus pumilus,1408,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Corynebacterium striatum,43770,opportunistic,"blood, resp, skin",nasal,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Fusobacterium mortiferum,850,primary,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Mycobacterium avium,1764,opportunistic,"blood, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Neisseria meningitidis,487,primary,"blood, resp, oral",nasal,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Arcanobacterium pyogenes,nan,opportunistic,"abscess, blood",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Bacillus sphaericus,293388,potential,resp,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Gordonia rubripertincta,36822,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Paenibacillus macerans,44252,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Peptostreptococcus anaerobius,1261,opportunistic,"blood, urine",gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Treponema pallidum,160,primary,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Borrelia duttonii,1432657,potential,blood,,established,relapsing fever,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Enterococcus faecalis,1351,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Neisseria cinerea,483,commensal,blood,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Streptococcus anginosus,1328,opportunistic,"abscess, blood","oral, nasal, stool",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Streptococcus mitis,28037,opportunistic,blood,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Streptococcus salivarius,1304,opportunistic,blood,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Leptospira interrogans,173,primary,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Clostridium sporogenes,1509,commensal,blood,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Eubacterium cylindroides,nan,commensal,,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Neisseria sicca,490,commensal,blood,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Staphylococcus epidermidis,1282,commensal,blood,skin,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Nocardia brasiliensis,37326,opportunistic,"abscess, blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Actinobacillus lignieresii,720,potential,"abscess, blood",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Eubacterium moniliforme,83339,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Acinetobacter calcoaceticus,471,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Corynebacterium pseudotuberculosis,1719,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Eubacterium multiforme,83339,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Bacteroides thetaiotaomicron,818,opportunistic,"abscess, blood",gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Bordetella bronchiseptica,518,potential,resp,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Francisella tularensis,263,primary,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Haemophilus actinomycetemcomitans,nan,opportunistic,oral,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Peptostreptococcus asaccharolyticus,1262,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Bartonella bacilliformis,774,primary,blood,,established,"oroya fever, verruga peruana",,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Borrelia persica,1417230,primary,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Burkholderia pseudomallei,28450,primary,"abscess, blood",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Klebsiella granulomatis,nan,primary,"abscess, blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Bacillus coagulans,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Bacillus thuringiensis,1428,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Clostridium fallax,1533,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Dermatophilus congolensis,1863,potential,skin,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Hathewaya histolytica,1498,primary,"abscess, blood",,established,gas gangrene,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Moraxella nonliquefaciens,478,commensal,blood,resp,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Rickettsia prowazekii,782,primary,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Bartonella quintana,803,primary,"blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Borrelia crocidurae,29520,primary,blood,,established,tick-borne relapsing fever,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Clostridium tertium,1559,commensal,blood,gut,established,"bacteremia, fever, abdominal pain, ",,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Actinobacillus equuli,718,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Clostridium bifermentans,1490,commensal,"blood, abscess","gut, oral",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Providencia rettgeri,587,opportunistic,"blood, urine",gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Campylobacter fetus,196,opportunistic,"blood, stool",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Enterococcus faecium,1352,commensal,blood,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Morganella morganii,582,opportunistic,"blood, urine",gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Rickettsia rickettsii,783,primary,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Serratia proteamaculans,28151,opportunistic,"blood, resp",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Shigella flexneri,623,primary,"blood, gut",,established,shigellosis,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Streptococcus bovis,1936207,primary,"blood, gut, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Orientia tsutsugamushi,784,primary,"blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Rickettsia typhi,785,primary,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Shigella sonnei,624,primary,"blood, gut",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Borrelia venezuelensis,1653839,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Haemophilus ducreyi,730,opportunistic,"blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Prevotella melaninogenica,28132,commensal,oral,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Fusobacterium nucleatum,851,primary,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Haemophilus parainfluenzae,729,opportunistic,blood,resp,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Streptococcus acidominimus,1326,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Bordetella pertussis,520,primary,"nasal, blood",,established,whooping cough,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Corynebacterium bovis,36808,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Eubacterium tenue,1737,potential,"abscess, blood",gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Haemophilus haemolyticus,726,commensal,blood,resp,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Mycobacterium chelonae,1774,opportunistic,"blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Neisseria flava,28449,commensal,blood,resp,established,meningitis,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Neisseria perflava,33053,commensal,blood,resp,established,meningitis,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Prescottia equi,43767,opportunistic,"blood, resp",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Nocardia otitidiscaviarum,1823,opportunistic,"abscess, blood, resp",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Streptococcus constellatus,76860,commensal,"abscess, blood, resp","oral, resp, gut, urine",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Streptococcus mutans,1309,opportunistic,oral,oral,established,"cavities, tooth decay",,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Streptobacillus moniliformis,34105,primary,"abscess, blood, resp",,established,rat bite fever,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Streptococcus intermedius,1338,commensal,abscess,"resp, gut, urine",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Borrelia hispanica,1417229,primary,blood,,established,tick-borne relapsing fever,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Delftia acidovorans,80866,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Listeria monocytogenes,1639,primary,"blood, gut",,established,listeriosis,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Mycobacterium marinum,1781,opportunistic,"blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Clostridium sordellii,1505,opportunistic,blood,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Corynebacterium ulcerans,65058,opportunistic,nasal,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Nocardia transvalensis,37333,opportunistic,"abscess, blood, resp",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Citrobacter freundii,546,commensal,"blood, resp, urine",gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Pseudomonas alcaligenes,43263,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Rhodococcus erythropolis,1833,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Chryseobacterium balustinum,246,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Myroides odoratus,256,opportunistic,"blood, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Chlamydophila psittaci,344886,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Neisseria flavescens,484,opportunistic,blood,resp,established,meningitis,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Peptococcus niger,2741,commensal,,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Campylobacter jejuni,197,primary,"blood, gut",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Mannheimia haemolytica,75985,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Rickettsia conorii,272944,primary,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Streptococcus uberis,1349,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Bacteroides distasonis,823,commensal,abscess,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Bacteroides ovatus,28116,commensal,abscess,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Bacteroides uniformis,820,commensal,blood,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Phocaeicola vulgatus,821,commensal,blood,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Bartonella elizabethae,807,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Borrelia turicatae,142,primary,blood,,established,tick-borne relapsing fever,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Fusobacterium varium,856,commensal,blood,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Gemella morbillorum,29391,potential,"abscess, blood",oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Chlamydia trachomatis,813,primary,"blood, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Clostridioides difficile,1496,opportunistic,gut,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Collinsella aerofaciens,74426,commensal,,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Cutibacterium avidum,33010,commensal,"abscess, blood",skin,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Eggerthella lenta,84112,opportunistic,"abscess, blood",gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Eubacterium limosum,1736,commensal,blood,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Aeromonas caviae,648,potential,"blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Rhodococcus fascians,1828,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Enterococcus durans,53345,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Eubacterium rectale,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Fusobacterium necrophorum,859,opportunistic,blood,"resp, gut",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Moraxella bovis,476,potential,blood,,established,pinkeye,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Prevotella zoogleoformans,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Actinomyces meyeri,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Bordetella parapertussis,519,primary,"blood, nasal",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Clostridium baratii,1561,primary,stool,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Cutibacterium granulosum,33011,commensal,blood,skin,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Mycobacterium fortuitum,1766,primary,"abscess, blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Coxiella burnetii,777,primary,blood,,established,Q fever,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Treponema carateum,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Yersinia enterocolitica,630,primary,gut,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Acinetobacter lwoffii,28090,opportunistic,blood,skin,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Campylobacter sputorum,206,opportunistic,"abscess, blood",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Haemophilus aphrophilus,732,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Serratia rubidaea,61652,opportunistic,"blood, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Staphylococcus saprophyticus,29385,opportunistic,urine,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Borrelia latyschewii,1027767,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Dichelobacter nodosus,870,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Ruminococcus productus,41978,commensal,,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Tsukamurella paurometabola,2061,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Borrelia hermsii,140,primary,blood,,established,tick-borne relapsing fever,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Borrelia parkeri,141,primary,blood,,established,tick-borne relapsing fever,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Pseudoramibacter alactolyticus,113287,potential,"abscess, blood",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Providencia alcalifaciens,126385,potential,gut,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Borrelia caucasica,28264,primary,blood,,established,tick-borne relapsing fever,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Arcanobacterium heamolyticum,28264,opportunistic,"blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Rickettsia akari,293614,primary,"blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Streptococcus sanguis,1305,commensal,blood,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Clostridium combesii,39481,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Faecalicatena Contorta contorta,39482,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Campylobacter coli,195,primary,"blood, gut",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Peptostreptococcus prevotii,1262,opportunistic,"abscess, blood","oral, skin, gut, urine",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Rickettsia sibirica,1144280,primary,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Ehrlichia phagocytophila,948,primary,blood,,established,human granulocytic anaplasmosis,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Rothia dentocariosa,2047,commensal,blood,"oral, resp",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Shigella boydii,621,primary,gut,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Mycobacterium ulcerans,1809,primary,"abscess, blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Rickettsia australis,1105110,primary,"blood, skin",Queensland tick typhus,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Rodentibacter pneumotropicus,758,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Actinomyces naeslundii,1655,opportunistic,abscess,oral,established,actinomycosis,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Vibrio parahaemolyticus,670,primary,"blood, gut, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Borrelia brasiliensis,1653832,primary,"blood, skin",,established,Lyme disease,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Aerococcus viridans,1377,opportunistic,urine,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Brevundimonas vesicularis,41276,opportunistic,"blood, sputum, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Haemophilus parahaemolyticus,735,commensal,blood,resp,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Metamycoplasma hominis,2098,opportunistic,"blood, resp, urine",urine,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Moraxella caviae,34060,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Mycobacterium abscessus,36809,primary,"abscess, blood, resp, skin",,established,"tuberculosis, leprosy",,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Staphylococcus hyicus,1284,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Brevundimonas diminuta,293,opportunistic,"blood, sputum, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Cellulomonas turbata,1714,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Hafnia alvei,569,commensal,"abscess, resp",gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Plesiomonas shigelloides,703,potential,gut,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Providencia stuartii,588,opportunistic,"blood, gut, skin, sputum, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Gardnerella vaginalis,2702,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Metamycoplasma salivarium,2124,commensal,blood,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Mycobacterium kansasii,1768,opportunistic,"resp, skin",,established,"tuberculosis, leprosy",,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Mycoplasmopsis fermentans,637387,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Amycolatopsis orientalis,31958,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Borrelia mazzottii,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Capnocytophaga ochracea,1018,potential,blood,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Comamonas testosteroni,285,opportunistic,"blood, resp, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Ehrlichia sennetsu,nan,potential,"abscess, blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Mycobacterium scrofulaceum,1783,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Pseudonocardia autotrophica,2074,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Saccharomonospora viridis,1852,opportunistic,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Cellulomonas cellulans,43670,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Actinomyces odontolyticus,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Eikenella corrodens,539,opportunistic,"abscess, blood","oral, resp",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Prevotella ruminicola,81582,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Chryseobacterium meningosepticum,1871047,opportunistic,"abscess, blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Mycobacterium xenopi,1789,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Neisseria mucosa,488,opportunistic,"blood, urine",nasal,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Klebsiella aerogenes,548,opportunistic,"abscess, blood, resp, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Moraxella ovis,29433,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Vibrio alginolyticus,663,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Wolinella succinogenes,844,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Actinobacillus suis,716,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Actinobacillus ureae,723,commensal,blood,resp,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Corynebacterium minutissimum,38301,commensal,skin,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Leifsonia aquatica,144185,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Moraxella cuniculi,34061,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Mycobacterium gordonae,1778,potential,"nasal, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Mycobacterium peregrinum,43304,opportunistic,"blood, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Pseudopropionibacterium propionicum,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Sebaldella termitidis,826,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Acinetobacter haemolyticus,29430,potential,"blood, sputum, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Megamonas hypermegale,158847,potential,gut,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Mycoplasmoides pneumoniae,2104,primary,"resp, sputum",,established,pneumonia,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Actinobacillus pleuropneumoniae,715,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Cardiobacterium hominis,2718,commensal,blood,"oral, resp",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Prevotella oralis,28137,commensal,,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Saccharopolyspora rectivirgula,28042,opportunistic,resp,,established,farmer's lung disease,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Edwardsiella tarda,636,opportunistic,"abscess, blood, stool",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Mycobacterium simiae,1784,opportunistic,"blood, resp",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Veillonella atypica,39777,commensal,blood,"oral, gut",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Veillonella dispar,39778,commensal,blood,"oral, gut",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Enterobacter cancerogenus,69218,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Lachnoanaerobaculum saburreum,467210,potential,oral,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Pseudomonas pseudoalcaligenes,43263,potential,"blood, sputum",,established,peritonitis,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Streptococcus suis,1307,opportunistic,"blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Enterococcus avium,33945,opportunistic,"abscess, blood, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Moraxella osloensis,34062,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Psychrobacter phenylpyruvicus,29432,potential,"abscess, blood",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Aggregatibacter aphrophilus,732,opportunistic,"abscess, blood, oral",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Kingella kingae,504,potential,"blood, resp",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Acidaminococcus fermentans,905,potential,stool,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Mycobacterium africanum,1354178,primary,"blood, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Neisseria lactamica,486,commensal,,"nasal, resp",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Citrobacter koseri,545,opportunistic,"abscess, blood, urine",gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Mycobacterium bovis,561275,opportunistic,"blood, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Neisseria elongata,495,commensal,blood,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Oligella urethralis,90245,commensal,blood,urine,established,urosepsis,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Porphyromonas asaccharolytica,28123,potential,"blood, oral",oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Prevotella intermedia,28131,opportunistic,oral,oral,established,periodontitis,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Achromobacter xylosoxidans,85698,opportunistic,"abscess, blood ,urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Citrobacter amalonaticus,35703,opportunistic,"blood, sputum, stool, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Gordonia bronchialis,2054,opportunistic,"abscess, blood",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Gordonia terrae,2055,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Mycobacterium asiaticum,1790,opportunistic,sputum,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Mycobacterium szulgai,1787,opportunistic,"blood, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Mycobacterium senegalense,1796,opportunistic,"blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Ralstonia pickettii,329,opportunistic,"blood, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Bacteroides eggerthii,28111,commensal,,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Bifidobacterium dentium,1689,commensal,,"oral, gut",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Gordonia amarae,36821,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Pasteurella aerogenes,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Streptococcus sobrinus,1310,potential,oral,,established,dental caries,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Ureaplasma urealyticum,2130,commensal,"blood, urine",urine,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Bacteroides splanchnicus,nan,commensal,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Mycobacterium shimoidei,29313,opportunistic,"resp, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Staphylococcus haemolyticus,1283,opportunistic,"abscess, blood, skin, urine",skin,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Staphylococcus warneri,1292,commensal,"blood, urine",skin,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Kingella denitrificans,502,commensal,blood,"oral, resp",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Moraxella atlantae,34059,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Staphylococcus intermedius,1285,potential,"abscess, blood",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Suttonella indologenes,13276,commensal,blood,resp,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Aggregatibacter segnis,739,commensal,blood,"oral, resp",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Mycobacterium malmoense,1780,opportunistic,"blood, resp, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Prevotella bivia,28125,commensal,"blood, vaginal",vaginal,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Prevotella disiens,28130,potential,oral,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Sphingomonas paucimobilis,13689,opportunistic,"abscess, blood, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Streptococcus criceti,1333,potential,oral,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Bacteroides ureolyticus,2981780,commensal,,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Mycobacterium haemophilum,29311,opportunistic,"abscess, blood, skin, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Serratia odorifera,618,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Yersinia ruckeri,29486,opportunistic,"abscess, blood",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Enterococcus casseliflavus,37734,opportunistic,"blood, urine",stool,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Legionella pneumophila,446,primary,"blood, sputum, urine",,established,Legionella's,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Rhodococcus rhodnii,38312,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Vibrio vulnificus,672,primary,"abscess, blood, gut ,urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Enterobacter sakazakii,42895,opportunistic,"blood, gut, sputum, stool, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Eubacterium brachy,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Eubacterium nodatum,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Eubacterium timidum,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Fluoribacter bozemanae,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Fluoribacter dumoffii,463,opportunistic,"resp, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Fluoribacter gormanii,464,opportunistic,"resp, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Pluralibacter gergoviae,61647,potential,"blood, resp, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Porphyromonas gingivalis,837,potential,oral,"resp, gut",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Porphyromonas macacae,28115,potential,oral,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Tatlockia micdadei,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Aeromonas sobria,646,opportunistic,"blood, gut",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Burkholderia cepacia,292,opportunistic,"blood, resp, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Campylobacter concisus,199,potential,"oral, gut, stool",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Campylobacter gracilis,824,opportunistic,"abscess, blood, oral, resp",oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4451896/ -Campylobacter rectus,203,potential,"abscess, blood, oral",oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Cedecea davisae,158484,opportunistic,"abscess, blood, sputum, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Cedecea lapagei,158823,opportunistic,"blood, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Edwardsiella hoshinae,93378,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Kluyvera ascorbata,51288,potential,"abscess, blood, sputum, urine","resp, gut",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://academic.oup.com/cid/article/33/7/e69/434175 -Kluyvera cryocrescens,580,potential,"abscess, blood",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://academic.oup.com/cid/article/33/7/e69/434175 -Lelliottia amnigena,1219085,opportunistic,"blood, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10536745/ -Rahnella aquatilis,34038,opportunistic,"blood, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC85911/ -Serratia ficaria,61651,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Stenotrophomonas maltophilia,40324,opportunistic,"abscess, blood, resp, skin, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/books/NBK572123/ -Vibrio fluvialis,676,primary,"blood, gut, stool",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2996184/ -Yersinia frederiksenii,29484,potential,"gut, stool",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://pubmed.ncbi.nlm.nih.gov/8104973/ -Yersinia intermedia,631,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Yersinia kristensenii,28152,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Capnocytophaga gingivalis,1017,commensal,blood,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8165836/ -Capnocytophaga sputigena,1019,opportunistic,"blood, oral",oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4071192/ -Enterococcus gallinarum,1353,commensal,blood,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Legionella jordanis,456,potential,"resp, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Legionella longbeachae,450,opportunistic,"resp, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3377390/ -Photobacterium damselae,38293,opportunistic,"abscess, blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Prevotella buccae,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Prevotella buccalis,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Prevotella denticola,28129,commensal,,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Prevotella loescheii,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Prevotella oris,28128,commensal,,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Tatumella ptyseos,82987,opportunistic,"blood, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Vibrio hollisae,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Vibrio mimicus,674,opportunistic,"gut, stool",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Cedecea neteri,158822,opportunistic,"blood, skin, sputum, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Centipeda periodontii,888060,potential,oral,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Legionella oakridgensis,29423,potential,"blood, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Legionella wadsworthii,28088,opportunistic,"resp, sputum",,established,pneumonia,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Listeria seeligeri,1640,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Listeria welshimeri,1643,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Mycobacterium porcinum,39693,potential,"blood, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Mycoplasmoides genitalium,243273,primary,urine,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Nocardia nova,37330,primary,"abscess, blood, resp, sputum",,established,nocardiosis,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Porphyromonas levii,28114,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Prevotella corporis,28128,commensal,,"oral, gut",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Prevotella veroralis,28137,commensal,,"oral, gut",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Proteus penneri,102862,opportunistic,"blood, stool, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Bordetella avium,521,oportunistic,"resp, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Borrelia burgdorferi,139,primary,"blood, skin",,established,Lyme disease,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Campylobacter curvus,200,potential,"gut, stool",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://www.frontiersin.org/articles/10.3389/fcimb.2018.00243/full -Campylobacter lari,201,potential,"blood, gut, stool",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Ewingella americana,41202,opportunistic,"blood, sputum, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Fusobacterium periodonticum,860,potential,oral,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://pubmed.ncbi.nlm.nih.gov/6575999/ -Legionella feeleii,453,primary,"resp, sputum, urine",,established,pneumonia,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Legionella sainthelensi,28087,primary,"resp, sputum",,established,pneumonia,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Listeria ivanovii,1638,opportunistic,"blood, gut, stool",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Porphyromonas endodontalis,28124,potential,"abscess, oral",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Vibrio furnissii,29494,primary,"blood, skin, stool",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3122773/ -Actinobacillus hominis,722,commensal,"blood, sputum",resp,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Arcobacter cryaerophilus,2933791,potential,stool,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5679684/ -Campylobacter hyointestinalis,198,potential,stool,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Enterococcus hirae,1354,opportunistic,"blood, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4590716/ -Eubacterium sulci,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Filifactor alocis,143361,potential,oral,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Gordonia sputi,36823,opportunistic,"blood, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10379339/ -Helicobacter pylori,210,primary,"blood, gut, stool",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Legionella anisa,28082,opportunistic,"sputum, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0159726 -Legionella cherrii,28084,opportunistic,sputum,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Legionella hackeliae,449,opportunistic,"resp, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Legionella rubrilucens,458,opportunistic,sputum,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Pasteurella canis,753,opportunistic,"abscess, blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Pasteurella dagmatis,754,opportunistic,"abscess, blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Pasteurella stomatis,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Prevotella heparinolytica,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Prevotella oulora,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Salmonella bongori,54736,potential,"gut, stool",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Tatlockia maceachernii,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Achromobacter piechaudii,72556,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3615974/ -Acinetobacter baumannii,470,opportunistic,"blood, resp, sputum, skin, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Acinetobacter johnsonii,40214,opportunistic,"blood, urine",skin,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Acinetobacter junii,40215,opportunistic,"blood, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Bacteroides caccae,47678,opportunistic,blood,"gut, stool",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8554563/ -Bacteroides forsythus,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Bacteroides merdae,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Bacteroides stercoris,46506,potential,blood,"gut, stool",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Enterococcus mundtii,53346,potential,eye,skin,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1081296/ -Prevotella dentalis,52227,opportunistic,"abscess, oral",oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Streptococcus canis,1329,opportunistic,"abscess, blood",skin,established,,"dogs, cats","Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.","https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5295620/#:~:text=Introduction-,Streptococcus%20canis%20(Sc)%20is%20a%20zoonotic%20pathogen%20that%20is%20transferred,immunocompromised%20rather%20than%20immunocompetent%20hosts." -Vibrio cincinnatiensis,675,potential,"blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.","https://www.sciencedirect.com/science/article/pii/S2214250922001925#:~:text=Vibrio%20cincinnatiensis%20is%20a%20halophilic,reported%20in%20humans%2C%20so%20far." -Bacteroides galacturonicus,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Bacteroides pectinophilus,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Bergeyella zoohelcum,1015,opportunistic,"abscess, blood",,established,,"dogs, cats","Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Leptospira borgpetersenii,174,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://bmcinfectdis.biomedcentral.com/articles/10.1186/s12879-015-0982-0 -Leptospira inadai,1049790,potential,skin,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5851024/ -Leptospira meyeri,29508,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Leptospira noguchii,28182,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Leptospira santarosai,28183,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://www.sciencedirect.com/science/article/pii/S1876034120304330 -Oligella ureolytica,90244,commensal,blood,urine,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4480403/ -Selenomonas artemidis,671224,commensal,blood,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC269556/ -Selenomonas dianae,135079,commensal,blood,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Selenomonas flueggei,135080,potential,blood,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Selenomonas infelix,679201,potential,blood,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Selenomonas noxia,135083,potential,oral,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8929098/ -Yersinia rohdei,29485,potential,"gut, stool","gut, stool",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6509991/ -Acinetobacter radioresistens,40216,opportunistic,"blood, resp",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6411504/ -Aeromonas veronii,654,primary,"blood, gut, resp, stool",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9195132/ -Corynebacterium jeikeium,38289,opportunistic,"blood, skin",skin,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7377673/ -Ehrlichia equi,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Enterobacter asburiae,61645,opportunistic,"abscess, blood, resp, urine, ",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Fibrobacter intestinalis,28122,commensal,,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Fusobacterium ulcerans,861,commensal,skin,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Helicobacter cinaedi,213,opportunistic,blood,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Helicobacter fennelliae,215,opportunistic,blood,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Legionella birminghamensis,28083,potential,resp,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://pubmed.ncbi.nlm.nih.gov/3320081/ -Ochrobactrum anthropi,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Staphylococcus lugdunensis,28035,commensal,"abscess, blood, skin",skin,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5698201/ -Yersinia bercovieri,634,potential,,,established,,mouse,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Yersinia mollaretii,33060,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Abiotrophia defectiva,46125,opportunistic,blood,"oral, gut",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Chlamydophila pneumoniae,83558,primary,"blood, resp, sputum, sinus",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Enterococcus raffinosus,71452,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9030019/ -Granulicatella adjacens,46124,commensal,"abscess, blood","oral, gut, urine",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5784284/ -Klebsiella ornithinolytica,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Legionella cincinnatiensis,28085,opportunistic,"blood, resp",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC88590/ -Streptococcus gordonii,1302,commensal,"blood, oral","oral, gut, skin",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Veillonella parvula,29466,commensal,blood,"oral, gut, vaginal",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Actinomyces georgiae,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Actinomyces gerencseriae,52769,commensal,"blood, oral","oral, gut, urine",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Bilophila wadsworthia,35833,opportunistic,"gut, stool","gut, stool",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Capnocytophaga canimorsus,28188,opportunistic,"blood, skin",,established,,"canine, feline","Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Capnocytophaga cynodegmi,28189,opportunistic,"blood, skin",,established,,canine,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Enterobacter hormaechei,158836,opportunistic,"blood, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://journals.asm.org/doi/10.1128/spectrum.02518-21 -Legionella tucsonensis,40335,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Pasteurella caballi,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Arcobacter butzleri,28197,primary,"blood, gut, stool",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Campylobacter upsaliensis,28080,primary,"blood, gut, stool",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Bartonella henselae,38323,opportunistic,blood,,established,,feline,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Corynebacterium urealyticum,43771,opportunistic,"blood, urine","skin, urine",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Ehrlichia chaffeensis,1249651,primary,blood,,established,,tick,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Ehrlichia ewingii,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Enterococcus flavescens,35783,opportunistic,"abscess, blood",gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://academic.oup.com/cid/article/32/11/1540/461246?login=false -Leptospira kirschneri,29507,opportunistic,"blood, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Peptostreptococcus lactolyticus,1262,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Peptostreptococcus vaginalis,1262,potential,"abscess, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://pubmed.ncbi.nlm.nih.gov/16887558/ -Porphyromonas circumdentaria,29524,potential,,,established,,feline,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Prevotella nigrescens,28133,opportunistic,oral,oral,established,periodontitis,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Rickettsia japonica,35790,opportunistic,blood,,established,,tick,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Tropheryma whippelii,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Citrobacter braakii,57706,opportunistic,"blood, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Citrobacter farmeri,67824,opportunistic,"blood, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Citrobacter sedlakii,67826,opportunistic,"abscess, blood","gut, stool",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Citrobacter werkmanii,67827,opportunistic,"abscess, blood, urine","gut, stool",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Citrobacter youngae,133448,opportunistic,"blood, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Corynebacterium afermentans,38286,commensal,"abscess, blood",skin,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Eubacterium saphenum,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Moraxella lincolnii,90241,potential,resp,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Mycobacterium celatum,28045,opportunistic,"resp, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2958542/ -Mycobacterium genavense,1408452,opportunistic,"resp, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://bmcinfectdis.biomedcentral.com/articles/10.1186/1471-2334-11-311 -Neisseria weaveri,28091,opportunistic,"abscess, blood, skin",,established,,dogs,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6011138/ -Rickettsia massiliae,416276,opportunistic,blood,,established,,tick,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Actinomyces neuii,1655,commensal,blood,vaginal,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Alloprevotella tannerae,76122,commensal,blood,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Corynebacterium propinquum,43769,commensal,blood,"oral, resp",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Legionella lansingensis,45067,potential,resp,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Porphyromonas catoniae,41976,potential,oral,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://www.sciencedirect.com/science/article/pii/S107599642030086X -Prevotella enoeca,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Actinomyces radingae,1689268,opportunistic,"abscess, blood, skin","skin, urine",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Actinomyces turicensis,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Arcanobacterium bernardiae,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Corynebacterium argentoratense,42817,opportunistic,"blood, resp",skin,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://journals.asm.org/doi/10.1128/genomea.00793-13 -Corynebacterium macginleyi,38290,primary,eye,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://www.nature.com/articles/s41598-021-85336-w -Helicobacter pullorum,35818,opportunistic,"blood, gut, stool",,established,,poultry,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Mycobacterium mucogenicum,56689,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6292041/ -Tsukamurella inchonensis,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Citrobacter rodentium,67825,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Mycobacterium conspicuum,44010,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Nocardia pseudobrasiliensis,45979,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Rickettsia africae,347255,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Sutterella wadsworthensis,40545,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Tsukamurella pulmonis,47312,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Tsukamurella tyrosinosolvens,57704,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Rickettsia honei,1175313,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Rickettsia felis,42862,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", -Helicobacter heilmannii,35817,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences356.1411 (2001): 983-989.", +Finegoldia magna,1260,opportunistic,blood,"oral, gut, skin",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Serratia marcescens,615,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Bacillus subtilis,1423,commensal,nasal,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Leptotrichia buccalis,523794,commensal,blood,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Vibrio cholerae,666,primary,stool,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Bacillus anthracis,1392,primary,"abscess, blood ,resp, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Pseudomonas aeruginosa,287,primary,"abscess, blood, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Borrelia recurrentis,412418,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Chromobacterium violaceum,536,opportunistic,"abscess, blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Clostridium butyricum,1492,commensal,,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Mycobacterium leprae,1769,primary,"abscess, blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Mycobacterium tuberculosis,1773,primary,"blood, resp, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Staphylococcus aureus MRSA-118,1413495,primary,"blood, nasal, oral, abscess",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Staphylococcus aureus MRSA-118,93061,opportunistic,"blood, abscess",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Staphylococcus aureus,1280,opportunistic,"blood, abscess",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Streptococcus pneumoniae,1313,opportunistic,"blood, resp, urine","nasal, resp",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Streptococcus pyogenes,1314,primary,"blood, resp, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Burkholderia mallei,13373,primary,"abscess, blood, resp, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Neisseria gonorrhoeae,485,primary,"blood, urine, gut",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Paenibacillus alvei,44250,opportunistic,abscess,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Proteus mirabilis,584,opportunistic,"blood, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Proteus vulgaris,585,opportunistic,"blood, urine",gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Bacillus mycoides,1405,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Clostridium tetani,1513,primary,"skin, blood",,established,tetanus,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Corynebacterium diphtheriae,1717,primary,"nasal, resp, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Klebsiella oxytoca,571,opportunistic,"blood, resp, urine",gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Klebsiella pneumoniae,573,commensal,"abscess, blood , skin, urine",gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Salmonella typhi,90370,primary,"blood, gut",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Bacillus cereus,1396,primary,"blood, gut",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Clostridium chauvoei,46867,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Pantoea agglomerans,549,opportunistic,"abscess, blood, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Salmonella enteritidis,149539,primary,"blood, gut",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Streptococcus equi,1336,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Clostridium septicum,1504,opportunistic,gut,gut,established,gas gangrene,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Mycobacterium smegmatis,1772,commensal,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Nocardia farcinica,37329,opportunistic,"abscess, blood",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Pseudomonas putida,303,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Yersinia pseudotuberculosis,633,primary,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Bacillus circulans,1397,opportunistic,"abscess, blood",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Enterobacter cloacae,550,opportunistic,"blood, urine",gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Nocardia asteroides,1824,opportunistic,"blood, resp, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Rhodococcus rhodochrous,1829,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Salmonella typhimurium,90370,primary,"blood, gut",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Brucella melitensis,29459,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Salmonella choleraesuis,28901,primary,"blood, gut",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Escherichia coli,562,opportunistic,"blood, urine",gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Pseudomonas fluorescens,294,potential,"blood, resp",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Actinomyces israelii,1659,opportunistic,blood,"oral, gut",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Clostridium botulinum,1491,primary,"blood, stool",,established,botulism,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Corynebacterium pseudodiphthericum,37637,commensal,nasal,resp,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Corynebacterium xerosis,1725,commensal,"abscess, blood","skin, mucus",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Haemophilus influenzae,727,opportunistic,blood,nasal,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Moraxella catarrhalis,480,opportunistic,"blood, sputum",resp,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Pseudomonas stutzeri,2892325,opportunistic,"blood, resp, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Serratia plymuthica,82996,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Streptococcus agalactiae,1311,primary,blood,,established,"altered mental status, chills, fevers",,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Yersinia pestis,632,primary,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Shigella dysenteriae,622,primary,stool,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Bacillus licheniformis,1402,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Bacteroides fragilis,817,commensal,blood,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Clostridium perfringens,1502,primary,"blood, stool",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Clostridium ramosum,1547,commensal,blood,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Pasteurella multocida,747,opportunistic,"blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Brevibacillus brevis,1393,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Clostridium novyi,1542,primary,blood,,established,gas gangrene,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Corynebacterium kutscheri,35755,opportunistic,"blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Cutibacterium acnes,1747,commensal,blood,skin,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Erysipelothrix rhusiopathiae,1648,opportunistic,"blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Moraxella lacunata,477,potential,"abscess, eye",,established,conjunctivitis,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Aeromonas hydrophila,644,oportunistic,"blood, gut",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Bacillus pumilus,1408,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Corynebacterium striatum,43770,opportunistic,"blood, resp, skin",nasal,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Fusobacterium mortiferum,850,primary,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Mycobacterium avium,1764,opportunistic,"blood, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Neisseria meningitidis,487,primary,"blood, resp, oral",nasal,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Arcanobacterium pyogenes,nan,opportunistic,"abscess, blood",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Bacillus sphaericus,293388,potential,resp,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Gordonia rubripertincta,36822,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Paenibacillus macerans,44252,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Peptostreptococcus anaerobius,1261,opportunistic,"blood, urine",gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Treponema pallidum,160,primary,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Borrelia duttonii,1432657,potential,blood,,established,relapsing fever,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Enterococcus faecalis,1351,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Neisseria cinerea,483,commensal,blood,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Streptococcus anginosus,1328,opportunistic,"abscess, blood","oral, nasal, stool",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Streptococcus mitis,28037,opportunistic,blood,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Streptococcus salivarius,1304,opportunistic,blood,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Leptospira interrogans,173,primary,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Clostridium sporogenes,1509,commensal,blood,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Eubacterium cylindroides,nan,commensal,,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Neisseria sicca,490,commensal,blood,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Staphylococcus epidermidis,1282,commensal,blood,skin,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Nocardia brasiliensis,37326,opportunistic,"abscess, blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Actinobacillus lignieresii,720,potential,"abscess, blood",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Eubacterium moniliforme,83339,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Acinetobacter calcoaceticus,471,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Corynebacterium pseudotuberculosis,1719,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Eubacterium multiforme,83339,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Bacteroides thetaiotaomicron,818,opportunistic,"abscess, blood",gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Bordetella bronchiseptica,518,potential,resp,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Francisella tularensis,263,primary,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Haemophilus actinomycetemcomitans,nan,opportunistic,oral,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Peptostreptococcus asaccharolyticus,1262,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Bartonella bacilliformis,774,primary,blood,,established,"oroya fever, verruga peruana",,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Borrelia persica,1417230,primary,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Burkholderia pseudomallei,28450,primary,"abscess, blood",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Klebsiella granulomatis,nan,primary,"abscess, blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Bacillus coagulans,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Bacillus thuringiensis,1428,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Clostridium fallax,1533,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Dermatophilus congolensis,1863,potential,skin,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Hathewaya histolytica,1498,primary,"abscess, blood",,established,gas gangrene,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Moraxella nonliquefaciens,478,commensal,blood,resp,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Rickettsia prowazekii,782,primary,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Bartonella quintana,803,primary,"blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Borrelia crocidurae,29520,primary,blood,,established,tick-borne relapsing fever,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Clostridium tertium,1559,commensal,blood,gut,established,"bacteremia, fever, abdominal pain, ",,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Actinobacillus equuli,718,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Clostridium bifermentans,1490,commensal,"blood, abscess","gut, oral",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Providencia rettgeri,587,opportunistic,"blood, urine",gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Campylobacter fetus,196,opportunistic,"blood, stool",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Enterococcus faecium,1352,commensal,blood,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Morganella morganii,582,opportunistic,"blood, urine",gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Rickettsia rickettsii,783,primary,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Serratia proteamaculans,28151,opportunistic,"blood, resp",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Shigella flexneri,623,primary,"blood, gut",,established,shigellosis,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Streptococcus bovis,1936207,primary,"blood, gut, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Orientia tsutsugamushi,784,primary,"blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Rickettsia typhi,785,primary,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Shigella sonnei,624,primary,"blood, gut",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Borrelia venezuelensis,1653839,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Haemophilus ducreyi,730,opportunistic,"blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Prevotella melaninogenica,28132,commensal,oral,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Fusobacterium nucleatum,851,primary,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Haemophilus parainfluenzae,729,opportunistic,blood,resp,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Streptococcus acidominimus,1326,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Bordetella pertussis,520,primary,"nasal, blood",,established,whooping cough,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Corynebacterium bovis,36808,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Eubacterium tenue,1737,potential,"abscess, blood",gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Haemophilus haemolyticus,726,commensal,blood,resp,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Mycobacterium chelonae,1774,opportunistic,"blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Neisseria flava,28449,commensal,blood,resp,established,meningitis,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Neisseria perflava,33053,commensal,blood,resp,established,meningitis,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Prescottia equi,43767,opportunistic,"blood, resp",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Nocardia otitidiscaviarum,1823,opportunistic,"abscess, blood, resp",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Streptococcus constellatus,76860,commensal,"abscess, blood, resp","oral, resp, gut, urine",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Streptococcus mutans,1309,opportunistic,oral,oral,established,"cavities, tooth decay",,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Streptobacillus moniliformis,34105,primary,"abscess, blood, resp",,established,rat bite fever,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Streptococcus intermedius,1338,commensal,abscess,"resp, gut, urine",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Borrelia hispanica,1417229,primary,blood,,established,tick-borne relapsing fever,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Delftia acidovorans,80866,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Listeria monocytogenes,1639,primary,"blood, gut",,established,listeriosis,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Mycobacterium marinum,1781,opportunistic,"blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Clostridium sordellii,1505,opportunistic,blood,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Corynebacterium ulcerans,65058,opportunistic,nasal,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Nocardia transvalensis,37333,opportunistic,"abscess, blood, resp",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Citrobacter freundii,546,commensal,"blood, resp, urine",gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Pseudomonas alcaligenes,43263,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Rhodococcus erythropolis,1833,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Chryseobacterium balustinum,246,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Myroides odoratus,256,opportunistic,"blood, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Chlamydophila psittaci,344886,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Neisseria flavescens,484,opportunistic,blood,resp,established,meningitis,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Peptococcus niger,2741,commensal,,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Campylobacter jejuni,197,primary,"blood, gut",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Mannheimia haemolytica,75985,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Rickettsia conorii,272944,primary,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Streptococcus uberis,1349,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Bacteroides distasonis,823,commensal,abscess,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Bacteroides ovatus,28116,commensal,abscess,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Bacteroides uniformis,820,commensal,blood,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Phocaeicola vulgatus,821,commensal,blood,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Bartonella elizabethae,807,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Borrelia turicatae,142,primary,blood,,established,tick-borne relapsing fever,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Fusobacterium varium,856,commensal,blood,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Gemella morbillorum,29391,potential,"abscess, blood",oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Chlamydia trachomatis,813,primary,"blood, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Clostridioides difficile,1496,opportunistic,gut,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Collinsella aerofaciens,74426,commensal,,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Cutibacterium avidum,33010,commensal,"abscess, blood",skin,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Eggerthella lenta,84112,opportunistic,"abscess, blood",gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Eubacterium limosum,1736,commensal,blood,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Aeromonas caviae,648,potential,"blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Rhodococcus fascians,1828,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Enterococcus durans,53345,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Eubacterium rectale,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Fusobacterium necrophorum,859,opportunistic,blood,"resp, gut",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Moraxella bovis,476,potential,blood,,established,pinkeye,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Prevotella zoogleoformans,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Actinomyces meyeri,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Bordetella parapertussis,519,primary,"blood, nasal",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Clostridium baratii,1561,primary,stool,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Cutibacterium granulosum,33011,commensal,blood,skin,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Mycobacterium fortuitum,1766,primary,"abscess, blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Coxiella burnetii,777,primary,blood,,established,Q fever,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Treponema carateum,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Yersinia enterocolitica,630,primary,gut,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Acinetobacter lwoffii,28090,opportunistic,blood,skin,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Campylobacter sputorum,206,opportunistic,"abscess, blood",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Haemophilus aphrophilus,732,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Serratia rubidaea,61652,opportunistic,"blood, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Staphylococcus saprophyticus,29385,opportunistic,urine,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Borrelia latyschewii,1027767,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Dichelobacter nodosus,870,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Ruminococcus productus,41978,commensal,,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Tsukamurella paurometabola,2061,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Borrelia hermsii,140,primary,blood,,established,tick-borne relapsing fever,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Borrelia parkeri,141,primary,blood,,established,tick-borne relapsing fever,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Pseudoramibacter alactolyticus,113287,potential,"abscess, blood",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Providencia alcalifaciens,126385,potential,gut,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Borrelia caucasica,28264,primary,blood,,established,tick-borne relapsing fever,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Arcanobacterium heamolyticum,28264,opportunistic,"blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Rickettsia akari,293614,primary,"blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Streptococcus sanguis,1305,commensal,blood,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Clostridium combesii,39481,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Faecalicatena Contorta contorta,39482,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Campylobacter coli,195,primary,"blood, gut",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Peptostreptococcus prevotii,1262,opportunistic,"abscess, blood","oral, skin, gut, urine",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Rickettsia sibirica,1144280,primary,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Ehrlichia phagocytophila,948,primary,blood,,established,human granulocytic anaplasmosis,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Rothia dentocariosa,2047,commensal,blood,"oral, resp",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Shigella boydii,621,primary,gut,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Mycobacterium ulcerans,1809,primary,"abscess, blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Rickettsia australis,1105110,primary,"blood, skin",Queensland tick typhus,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Rodentibacter pneumotropicus,758,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Actinomyces naeslundii,1655,opportunistic,abscess,oral,established,actinomycosis,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Vibrio parahaemolyticus,670,primary,"blood, gut, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Borrelia brasiliensis,1653832,primary,"blood, skin",,established,Lyme disease,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Aerococcus viridans,1377,opportunistic,urine,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Brevundimonas vesicularis,41276,opportunistic,"blood, sputum, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Haemophilus parahaemolyticus,735,commensal,blood,resp,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Metamycoplasma hominis,2098,opportunistic,"blood, resp, urine",urine,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Moraxella caviae,34060,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Mycobacterium abscessus,36809,primary,"abscess, blood, resp, skin",,established,"tuberculosis, leprosy",,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Staphylococcus hyicus,1284,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Brevundimonas diminuta,293,opportunistic,"blood, sputum, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Cellulomonas turbata,1714,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Hafnia alvei,569,commensal,"abscess, resp",gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Plesiomonas shigelloides,703,potential,gut,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Providencia stuartii,588,opportunistic,"blood, gut, skin, sputum, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Gardnerella vaginalis,2702,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Metamycoplasma salivarium,2124,commensal,blood,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Mycobacterium kansasii,1768,opportunistic,"resp, skin",,established,"tuberculosis, leprosy",,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Mycoplasmopsis fermentans,637387,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Amycolatopsis orientalis,31958,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Borrelia mazzottii,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Capnocytophaga ochracea,1018,potential,blood,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Comamonas testosteroni,285,opportunistic,"blood, resp, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Ehrlichia sennetsu,nan,potential,"abscess, blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Mycobacterium scrofulaceum,1783,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Pseudonocardia autotrophica,2074,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Saccharomonospora viridis,1852,opportunistic,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Cellulomonas cellulans,43670,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Actinomyces odontolyticus,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Eikenella corrodens,539,opportunistic,"abscess, blood","oral, resp",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Prevotella ruminicola,81582,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Chryseobacterium meningosepticum,1871047,opportunistic,"abscess, blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Mycobacterium xenopi,1789,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Neisseria mucosa,488,opportunistic,"blood, urine",nasal,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Klebsiella aerogenes,548,opportunistic,"abscess, blood, resp, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Moraxella ovis,29433,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Vibrio alginolyticus,663,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Wolinella succinogenes,844,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Actinobacillus suis,716,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Actinobacillus ureae,723,commensal,blood,resp,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Corynebacterium minutissimum,38301,commensal,skin,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Leifsonia aquatica,144185,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Moraxella cuniculi,34061,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Mycobacterium gordonae,1778,potential,"nasal, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Mycobacterium peregrinum,43304,opportunistic,"blood, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Pseudopropionibacterium propionicum,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Sebaldella termitidis,826,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Acinetobacter haemolyticus,29430,potential,"blood, sputum, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Megamonas hypermegale,158847,potential,gut,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Mycoplasmoides pneumoniae,2104,primary,"resp, sputum",,established,pneumonia,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Actinobacillus pleuropneumoniae,715,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Cardiobacterium hominis,2718,commensal,blood,"oral, resp",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Prevotella oralis,28137,commensal,,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Saccharopolyspora rectivirgula,28042,opportunistic,resp,,established,farmer's lung disease,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Edwardsiella tarda,636,opportunistic,"abscess, blood, stool",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Mycobacterium simiae,1784,opportunistic,"blood, resp",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Veillonella atypica,39777,commensal,blood,"oral, gut",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Veillonella dispar,39778,commensal,blood,"oral, gut",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Enterobacter cancerogenus,69218,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Lachnoanaerobaculum saburreum,467210,potential,oral,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Pseudomonas pseudoalcaligenes,43263,potential,"blood, sputum",,established,peritonitis,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Streptococcus suis,1307,opportunistic,"blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Enterococcus avium,33945,opportunistic,"abscess, blood, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Moraxella osloensis,34062,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Psychrobacter phenylpyruvicus,29432,potential,"abscess, blood",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Aggregatibacter aphrophilus,732,opportunistic,"abscess, blood, oral",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Kingella kingae,504,potential,"blood, resp",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Acidaminococcus fermentans,905,potential,stool,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Mycobacterium africanum,1354178,primary,"blood, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Neisseria lactamica,486,commensal,,"nasal, resp",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Citrobacter koseri,545,opportunistic,"abscess, blood, urine",gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Mycobacterium bovis,561275,opportunistic,"blood, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Neisseria elongata,495,commensal,blood,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Oligella urethralis,90245,commensal,blood,urine,established,urosepsis,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Porphyromonas asaccharolytica,28123,potential,"blood, oral",oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Prevotella intermedia,28131,opportunistic,oral,oral,established,periodontitis,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Achromobacter xylosoxidans,85698,opportunistic,"abscess, blood ,urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Citrobacter amalonaticus,35703,opportunistic,"blood, sputum, stool, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Gordonia bronchialis,2054,opportunistic,"abscess, blood",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Gordonia terrae,2055,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Mycobacterium asiaticum,1790,opportunistic,sputum,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Mycobacterium szulgai,1787,opportunistic,"blood, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Mycobacterium senegalense,1796,opportunistic,"blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Ralstonia pickettii,329,opportunistic,"blood, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Bacteroides eggerthii,28111,commensal,,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Bifidobacterium dentium,1689,commensal,,"oral, gut",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Gordonia amarae,36821,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Pasteurella aerogenes,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Streptococcus sobrinus,1310,potential,oral,,established,dental caries,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Ureaplasma urealyticum,2130,commensal,"blood, urine",urine,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Bacteroides splanchnicus,nan,commensal,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Mycobacterium shimoidei,29313,opportunistic,"resp, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Staphylococcus haemolyticus,1283,opportunistic,"abscess, blood, skin, urine",skin,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Staphylococcus warneri,1292,commensal,"blood, urine",skin,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Kingella denitrificans,502,commensal,blood,"oral, resp",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Moraxella atlantae,34059,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Staphylococcus intermedius,1285,potential,"abscess, blood",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Suttonella indologenes,13276,commensal,blood,resp,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Aggregatibacter segnis,739,commensal,blood,"oral, resp",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Mycobacterium malmoense,1780,opportunistic,"blood, resp, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Prevotella bivia,28125,commensal,"blood, vaginal",vaginal,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Prevotella disiens,28130,potential,oral,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Sphingomonas paucimobilis,13689,opportunistic,"abscess, blood, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Streptococcus criceti,1333,potential,oral,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Bacteroides ureolyticus,2981780,commensal,,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Mycobacterium haemophilum,29311,opportunistic,"abscess, blood, skin, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Serratia odorifera,618,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Yersinia ruckeri,29486,opportunistic,"abscess, blood",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Enterococcus casseliflavus,37734,opportunistic,"blood, urine",stool,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Legionella pneumophila,446,primary,"blood, sputum, urine",,established,Legionella's,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Rhodococcus rhodnii,38312,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Vibrio vulnificus,672,primary,"abscess, blood, gut ,urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Enterobacter sakazakii,42895,opportunistic,"blood, gut, sputum, stool, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Eubacterium brachy,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Eubacterium nodatum,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Eubacterium timidum,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Fluoribacter bozemanae,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Fluoribacter dumoffii,463,opportunistic,"resp, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Fluoribacter gormanii,464,opportunistic,"resp, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Pluralibacter gergoviae,61647,potential,"blood, resp, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Porphyromonas gingivalis,837,potential,oral,"resp, gut",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Porphyromonas macacae,28115,potential,oral,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Tatlockia micdadei,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Aeromonas sobria,646,opportunistic,"blood, gut",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Burkholderia cepacia,292,opportunistic,"blood, resp, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Campylobacter concisus,199,potential,"oral, gut, stool",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Campylobacter gracilis,824,opportunistic,"abscess, blood, oral, resp",oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4451896/ +Campylobacter rectus,203,potential,"abscess, blood, oral",oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Cedecea davisae,158484,opportunistic,"abscess, blood, sputum, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Cedecea lapagei,158823,opportunistic,"blood, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Edwardsiella hoshinae,93378,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Kluyvera ascorbata,51288,potential,"abscess, blood, sputum, urine","resp, gut",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://academic.oup.com/cid/article/33/7/e69/434175 +Kluyvera cryocrescens,580,potential,"abscess, blood",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://academic.oup.com/cid/article/33/7/e69/434175 +Lelliottia amnigena,1219085,opportunistic,"blood, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10536745/ +Rahnella aquatilis,34038,opportunistic,"blood, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC85911/ +Serratia ficaria,61651,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Stenotrophomonas maltophilia,40324,opportunistic,"abscess, blood, resp, skin, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/books/NBK572123/ +Vibrio fluvialis,676,primary,"blood, gut, stool",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2996184/ +Yersinia frederiksenii,29484,potential,"gut, stool",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://pubmed.ncbi.nlm.nih.gov/8104973/ +Yersinia intermedia,631,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Yersinia kristensenii,28152,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Capnocytophaga gingivalis,1017,commensal,blood,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8165836/ +Capnocytophaga sputigena,1019,opportunistic,"blood, oral",oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4071192/ +Enterococcus gallinarum,1353,commensal,blood,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Legionella jordanis,456,potential,"resp, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Legionella longbeachae,450,opportunistic,"resp, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3377390/ +Photobacterium damselae,38293,opportunistic,"abscess, blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Prevotella buccae,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Prevotella buccalis,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Prevotella denticola,28129,commensal,,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Prevotella loescheii,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Prevotella oris,28128,commensal,,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Tatumella ptyseos,82987,opportunistic,"blood, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Vibrio hollisae,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Vibrio mimicus,674,opportunistic,"gut, stool",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Cedecea neteri,158822,opportunistic,"blood, skin, sputum, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Centipeda periodontii,888060,potential,oral,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Legionella oakridgensis,29423,potential,"blood, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Legionella wadsworthii,28088,opportunistic,"resp, sputum",,established,pneumonia,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Listeria seeligeri,1640,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Listeria welshimeri,1643,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Mycobacterium porcinum,39693,potential,"blood, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Mycoplasmoides genitalium,243273,primary,urine,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Nocardia nova,37330,primary,"abscess, blood, resp, sputum",,established,nocardiosis,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Porphyromonas levii,28114,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Prevotella corporis,28128,commensal,,"oral, gut",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Prevotella veroralis,28137,commensal,,"oral, gut",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Proteus penneri,102862,opportunistic,"blood, stool, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Bordetella avium,521,oportunistic,"resp, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Borrelia burgdorferi,139,primary,"blood, skin",,established,Lyme disease,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Campylobacter curvus,200,potential,"gut, stool",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://www.frontiersin.org/articles/10.3389/fcimb.2018.00243/full +Campylobacter lari,201,potential,"blood, gut, stool",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Ewingella americana,41202,opportunistic,"blood, sputum, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Fusobacterium periodonticum,860,potential,oral,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://pubmed.ncbi.nlm.nih.gov/6575999/ +Legionella feeleii,453,primary,"resp, sputum, urine",,established,pneumonia,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Legionella sainthelensi,28087,primary,"resp, sputum",,established,pneumonia,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Listeria ivanovii,1638,opportunistic,"blood, gut, stool",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Porphyromonas endodontalis,28124,potential,"abscess, oral",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Vibrio furnissii,29494,primary,"blood, skin, stool",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3122773/ +Actinobacillus hominis,722,commensal,"blood, sputum",resp,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Arcobacter cryaerophilus,2933791,potential,stool,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5679684/ +Campylobacter hyointestinalis,198,potential,stool,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Enterococcus hirae,1354,opportunistic,"blood, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4590716/ +Eubacterium sulci,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Filifactor alocis,143361,potential,oral,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Gordonia sputi,36823,opportunistic,"blood, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10379339/ +Helicobacter pylori,210,primary,"blood, gut, stool",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Legionella anisa,28082,opportunistic,"sputum, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0159726 +Legionella cherrii,28084,opportunistic,sputum,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Legionella hackeliae,449,opportunistic,"resp, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Legionella rubrilucens,458,opportunistic,sputum,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Pasteurella canis,753,opportunistic,"abscess, blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Pasteurella dagmatis,754,opportunistic,"abscess, blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Pasteurella stomatis,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Prevotella heparinolytica,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Prevotella oulora,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Salmonella bongori,54736,potential,"gut, stool",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Tatlockia maceachernii,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Achromobacter piechaudii,72556,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3615974/ +Acinetobacter baumannii,470,opportunistic,"blood, resp, sputum, skin, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Acinetobacter johnsonii,40214,opportunistic,"blood, urine",skin,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Acinetobacter junii,40215,opportunistic,"blood, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Bacteroides caccae,47678,opportunistic,blood,"gut, stool",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8554563/ +Bacteroides forsythus,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Bacteroides merdae,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Bacteroides stercoris,46506,potential,blood,"gut, stool",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Enterococcus mundtii,53346,potential,eye,skin,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1081296/ +Prevotella dentalis,52227,opportunistic,"abscess, oral",oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Streptococcus canis,1329,opportunistic,"abscess, blood",skin,established,,"dogs, cats","Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.","https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5295620/#:~:text=Introduction-,Streptococcus%20canis%20(Sc)%20is%20a%20zoonotic%20pathogen%20that%20is%20transferred,immunocompromised%20rather%20than%20immunocompetent%20hosts." +Vibrio cincinnatiensis,675,potential,"blood, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.","https://www.sciencedirect.com/science/article/pii/S2214250922001925#:~:text=Vibrio%20cincinnatiensis%20is%20a%20halophilic,reported%20in%20humans%2C%20so%20far." +Bacteroides galacturonicus,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Bacteroides pectinophilus,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Bergeyella zoohelcum,1015,opportunistic,"abscess, blood",,established,,"dogs, cats","Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Leptospira borgpetersenii,174,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://bmcinfectdis.biomedcentral.com/articles/10.1186/s12879-015-0982-0 +Leptospira inadai,1049790,potential,skin,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5851024/ +Leptospira meyeri,29508,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Leptospira noguchii,28182,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Leptospira santarosai,28183,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://www.sciencedirect.com/science/article/pii/S1876034120304330 +Oligella ureolytica,90244,commensal,blood,urine,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4480403/ +Selenomonas artemidis,671224,commensal,blood,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC269556/ +Selenomonas dianae,135079,commensal,blood,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Selenomonas flueggei,135080,potential,blood,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Selenomonas infelix,679201,potential,blood,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Selenomonas noxia,135083,potential,oral,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8929098/ +Yersinia rohdei,29485,potential,"gut, stool","gut, stool",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6509991/ +Acinetobacter radioresistens,40216,opportunistic,"blood, resp",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6411504/ +Aeromonas veronii,654,primary,"blood, gut, resp, stool",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9195132/ +Corynebacterium jeikeium,38289,opportunistic,"blood, skin",skin,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7377673/ +Ehrlichia equi,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Enterobacter asburiae,61645,opportunistic,"abscess, blood, resp, urine, ",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Fibrobacter intestinalis,28122,commensal,,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Fusobacterium ulcerans,861,commensal,skin,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Helicobacter cinaedi,213,opportunistic,blood,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Helicobacter fennelliae,215,opportunistic,blood,gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Legionella birminghamensis,28083,potential,resp,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://pubmed.ncbi.nlm.nih.gov/3320081/ +Ochrobactrum anthropi,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Staphylococcus lugdunensis,28035,commensal,"abscess, blood, skin",skin,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5698201/ +Yersinia bercovieri,634,potential,,,established,,mouse,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Yersinia mollaretii,33060,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Abiotrophia defectiva,46125,opportunistic,blood,"oral, gut",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Chlamydophila pneumoniae,83558,primary,"blood, resp, sputum, sinus",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Enterococcus raffinosus,71452,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9030019/ +Granulicatella adjacens,46124,commensal,"abscess, blood","oral, gut, urine",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5784284/ +Klebsiella ornithinolytica,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Legionella cincinnatiensis,28085,opportunistic,"blood, resp",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC88590/ +Streptococcus gordonii,1302,commensal,"blood, oral","oral, gut, skin",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Veillonella parvula,29466,commensal,blood,"oral, gut, vaginal",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Actinomyces georgiae,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Actinomyces gerencseriae,52769,commensal,"blood, oral","oral, gut, urine",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Bilophila wadsworthia,35833,opportunistic,"gut, stool","gut, stool",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Capnocytophaga canimorsus,28188,opportunistic,"blood, skin",,established,,"canine, feline","Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Capnocytophaga cynodegmi,28189,opportunistic,"blood, skin",,established,,canine,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Enterobacter hormaechei,158836,opportunistic,"blood, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://journals.asm.org/doi/10.1128/spectrum.02518-21 +Legionella tucsonensis,40335,potential,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Pasteurella caballi,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Arcobacter butzleri,28197,primary,"blood, gut, stool",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Campylobacter upsaliensis,28080,primary,"blood, gut, stool",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Bartonella henselae,38323,opportunistic,blood,,established,,feline,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Corynebacterium urealyticum,43771,opportunistic,"blood, urine","skin, urine",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Ehrlichia chaffeensis,1249651,primary,blood,,established,,tick,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Ehrlichia ewingii,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Enterococcus flavescens,35783,opportunistic,"abscess, blood",gut,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://academic.oup.com/cid/article/32/11/1540/461246?login=false +Leptospira kirschneri,29507,opportunistic,"blood, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Peptostreptococcus lactolyticus,1262,potential,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Peptostreptococcus vaginalis,1262,potential,"abscess, skin",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://pubmed.ncbi.nlm.nih.gov/16887558/ +Porphyromonas circumdentaria,29524,potential,,,established,,feline,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Prevotella nigrescens,28133,opportunistic,oral,oral,established,periodontitis,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Rickettsia japonica,35790,opportunistic,blood,,established,,tick,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Tropheryma whippelii,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Citrobacter braakii,57706,opportunistic,"blood, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Citrobacter farmeri,67824,opportunistic,"blood, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Citrobacter sedlakii,67826,opportunistic,"abscess, blood","gut, stool",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Citrobacter werkmanii,67827,opportunistic,"abscess, blood, urine","gut, stool",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Citrobacter youngae,133448,opportunistic,"blood, urine",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Corynebacterium afermentans,38286,commensal,"abscess, blood",skin,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Eubacterium saphenum,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Moraxella lincolnii,90241,potential,resp,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Mycobacterium celatum,28045,opportunistic,"resp, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2958542/ +Mycobacterium genavense,1408452,opportunistic,"resp, sputum",,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://bmcinfectdis.biomedcentral.com/articles/10.1186/1471-2334-11-311 +Neisseria weaveri,28091,opportunistic,"abscess, blood, skin",,established,,dogs,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6011138/ +Rickettsia massiliae,416276,opportunistic,blood,,established,,tick,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Actinomyces neuii,1655,commensal,blood,vaginal,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Alloprevotella tannerae,76122,commensal,blood,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Corynebacterium propinquum,43769,commensal,blood,"oral, resp",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Legionella lansingensis,45067,potential,resp,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Porphyromonas catoniae,41976,potential,oral,oral,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://www.sciencedirect.com/science/article/pii/S107599642030086X +Prevotella enoeca,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Actinomyces radingae,1689268,opportunistic,"abscess, blood, skin","skin, urine",established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Actinomyces turicensis,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Arcanobacterium bernardiae,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Corynebacterium argentoratense,42817,opportunistic,"blood, resp",skin,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://journals.asm.org/doi/10.1128/genomea.00793-13 +Corynebacterium macginleyi,38290,primary,eye,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://www.nature.com/articles/s41598-021-85336-w +Helicobacter pullorum,35818,opportunistic,"blood, gut, stool",,established,,poultry,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Mycobacterium mucogenicum,56689,opportunistic,blood,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.",https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6292041/ +Tsukamurella inchonensis,nan,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Citrobacter rodentium,67825,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Mycobacterium conspicuum,44010,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Nocardia pseudobrasiliensis,45979,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Rickettsia africae,347255,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Sutterella wadsworthensis,40545,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Tsukamurella pulmonis,47312,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Tsukamurella tyrosinosolvens,57704,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Rickettsia honei,1175313,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Rickettsia felis,42862,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", +Helicobacter heilmannii,35817,,,,established,,,"Taylor, Louise H., Sophia M. Latham, and Mark EJ Woolhouse. ""Risk factors for human disease emergence.""ÊPhilosophical Transactions of the Royal Society of London. Series B: Biological SciencesÊ356.1411 (2001): 983-989.", Bacteroides gracilis,817,,,,established,,,"Tanner, A. C. R., et al. ""Wolinella recta, Campylobacter concisus, Bacteroides gracilis, and Eikeneila corrodens from periodontal lesions.""Journal of periodontal research22.4 (1987): 327-330.", Staphylococcus pseudolugdunensis,28035,,,,established,,,"Tang, Yi-Wei, et al. ""Staphylococcus pseudolugdunensis sp. nov., a pyrrolidonyl arylamidase/ornithine decarboxylase-positive bacterium isolated from blood cultures.""Diagnostic microbiology and infectious disease60.4 (2008): 351-359.", Necropsobacter rosorum,nan,,,,established,,,"Tan, Thean Yen, Lily Siew Yong Ng, and Li Ching Eng. ""Five clinical cases of Necropsobacter rosorum bacteremia.""Journal of clinical microbiology51.4 (2013): 1337-1340.", @@ -746,10 +746,10 @@ Bisgaardia hudsonensis,109472,,,,putative,,,"Sundeep, S., and V. Cleeve. ""Isola Porphyromonas bennonis,1122971,,,,established,,,"Summanen, Paula H., Paul A. Lawson, and Sydney M. Finegold. ""Porphyromonas bennonis sp. nov., isolated from human clinical specimens.""International journal of systematic and evolutionary microbiology59.7 (2009): 1727-1732.", Porphyromonas somerae,322095,,,,established,,,"Summanen, Paula H., et al. ""Porphyromonas somerae sp. nov., a pathogen isolated from humans and distinct from Porphyromonas levii.""Journal of clinical microbiology43.9 (2005): 4455-4459.", Clostridium sphenoides,nan,primary,blood,,established,,,"Sullivan, S. N., R. J. Darwish, and B. C. Schieven. ""Severe diarrhea due to Clostridium sphenoides: a case report.""Canadian Medical Association Journal123.5 (1980): 398.", -Lactobacillus jensenii,109790,commensal,blood,vaginal,established,,,"Suarez-Esquivel, Marcela, et al. ""Brucella neotomae infection in humans, Costa Rica.""Emerging Infectious Diseases23.6 (2017): 997.", -Brucella neotomae,29460,,,,established,,,"Suarez-Esquivel, Marcela, et al. ""Brucella neotomae infection in humans, Costa Rica.""Emerging Infectious Diseases23.6 (2017): 997.", +Lactobacillus jensenii,109790,commensal,blood,vaginal,established,,,"Suarez-Esquivel, Marcela, et al. ""Brucella neotomae infection in humans, Costa Rica.""ÊEmerging Infectious DiseasesÊ23.6 (2017): 997.", +Brucella neotomae,29460,,,,established,,,"Suarez-Esquivel, Marcela, et al. ""Brucella neotomae infection in humans, Costa Rica.""ÊEmerging Infectious DiseasesÊ23.6 (2017): 997.", Eikenella exigua,2528037,,,,putative,,,"Stormo, Kristin A., et al. ""Eikenella exigua sp. nov., isolated from brain abscess and blood.""International journal of systematic and evolutionary microbiology70.3 (2020): 1478-1488.", -Staphylococcus sciuri,29387,,,,established,,,"Stepanovic, Srdjan, et al. ""Surgical wound infection associated with Staphylococcus sciuri.""Scandinavian journal of infectious diseases34.9 (2002): 685-686.", +Staphylococcus sciuri,29387,,,,established,,,"Stepanovic, Srdjan, et al. ""Surgical wound infection associated with Staphylococcus sciuri.""ÊScandinavian journal of infectious diseasesÊ34.9 (2002): 685-686.", Legionella londiniensis,45068,,,,putative,,,"Stallworth, Christina, et al. ""Legionnaires' disease caused by Legionella londiniensis.""Journal of clinical microbiology50.12 (2012): 4178-4179.", Mycobacterium interjectum,33895,,,,established,,,"Springer, B., et al. ""Mycobacterium interjectum, a new species isolated from a patient with chronic lymphadenitis.""Journal of clinical microbiology31.12 (1993): 3083-3089.", Agrobacterium tumefaciens,358,,,,established,,,"Southern Jr, Paul M. ""Bacteremia due to Agrobacterium tumefaciens (radiobacter) report of infection in a pregnant woman and her stillborn fetus.""Diagnostic microbiology and infectious disease24.1 (1996): 43-45.", @@ -759,7 +759,7 @@ Alistipes shahii,328814,,,,putative,,,"Song, Yuli, et al. ""Alistipes onderdonki Anaerococcus murdochii,411577,,,,putative,,,"Song, Yuli, Chengxu Liu, and Sydney M. Finegold. ""Peptoniphilus gorbachii sp. nov., Peptoniphilus olsenii sp. nov., and Anaerococcus murdochii sp. nov. isolated from clinical specimens of human origin.""Journal of clinical microbiology45.6 (2007): 1746-1752.", Peptoniphilus gorbachii,411567,,,,established,,,"Song, Yuli, Chengxu Liu, and Sydney M. Finegold. ""Peptoniphilus gorbachii sp. nov., Peptoniphilus olsenii sp. nov., and Anaerococcus murdochii sp. nov. isolated from clinical specimens of human origin.""Journal of clinical microbiology45.6 (2007): 1746-1752.", Peptoniphilus olsenii,2058292,,,,putative,,,"Song, Yuli, Chengxu Liu, and Sydney M. Finegold. ""Peptoniphilus gorbachii sp. nov., Peptoniphilus olsenii sp. nov., and Anaerococcus murdochii sp. nov. isolated from clinical specimens of human origin.""Journal of clinical microbiology45.6 (2007): 1746-1752.", -Bacteroides nordii,291645,,,,established,,,"Song, Y. L., et al. ""Bacteroides nordii sp. nov. and Bacteroides salyersae sp. nov. isolated from clinical specimens of human intestinal origin.""Journal of clinical microbiology42.12 (2004): 5565-5570.", +Bacteroides nordii,291645,,,,established,,,"Song, Y. L., et al. ""Bacteroides nordii sp. nov. and Bacteroides salyersae sp. nov. isolated from clinical specimens of human intestinal origin.""ÊJournal of clinical microbiologyÊ42.12 (2004): 5565-5570.", Kocuria salsicia,664639,,,,putative,,,"Sohn, Kyung Mok, et al. ""Catheter-related bacteremia caused by Kocuria salsicia: the first case.""Journal of Infection and Chemotherapy21.4 (2015): 305-307.", Bergeyella cardium,1585976,,,,established,,,"Sohn, Kyung Mok, et al. ""A new causative bacteria of infective endocarditis, Bergeyella cardium sp. nov.""Diagnostic microbiology and infectious disease81.3 (2015): 213-216.", Delftia lacustris,558537,,,,established,,,"Sohn, Kyung Mok, and Jin-Yang Baek. ""Delftia lacustris septicemia in a pheochromocytoma patient: case report and literature review.""Infectious Diseases47.5 (2015): 349-353.", @@ -771,9 +771,9 @@ Leptospira wolffii,409998,,,,putative,,,"Slack, Andrew T., et al. ""Leptospira w Stomatobaculum longum,796942,,,,putative,,,"Sizova, Maria V., et al. ""Stomatobaculum longum gen. nov., sp. nov., an obligately anaerobic bacterium from the human oral cavity.""International journal of systematic and evolutionary microbiology63.Pt 4 (2013): 1450.", Oribacterium asaccharolyticum,1501332,,,,putative,,,"Sizova, Maria V., et al. ""Oribacterium parvum sp. nov. and Oribacterium asaccharolyticum sp. nov., obligately anaerobic bacteria from the human oral cavity, and emended description of the genus Oribacterium.""International journal of systematic and evolutionary microbiology64.Pt 8 (2014): 2642.", Oribacterium parvum,1501329,,,,putative,,,"Sizova, Maria V., et al. ""Oribacterium parvum sp. nov. and Oribacterium asaccharolyticum sp. nov., obligately anaerobic bacteria from the human oral cavity, and emended description of the genus Oribacterium.""International journal of systematic and evolutionary microbiology64.Pt 8 (2014): 2642.", -Treponema socranskii,53419,,,,established,,,"Siqueira Jr, Jose F., and Isabela N. Ras. ""Treponema socranskii in primary endodontic infections as detected by nested PCR.""Journal of Endodontics29.4 (2003): 244-247.", +Treponema socranskii,53419,,,,established,,,"Siqueira Jr, Jose F., and Isabela N. R™as. ""Treponema socranskii in primary endodontic infections as detected by nested PCR.""ÊJournal of EndodonticsÊ29.4 (2003): 244-247.", Sciscionella marina,1123244,,,,putative,,,"Sinha, M., et al. ""Bacteraemia caused by Sciscionella marina in a lymphoma patient: phenotypically mimicking Nocardia.""Journal of medical microbiology62.6 (2013): 929-931.", -Vibrio anguillarum,55601,,,,putative,,,"Sinatra, Jennifer A. ""Notes from the field: Fatal Vibrio anguillarum infection in an immunocompromised patient-Maine, 2017.""MMWR. Morbidity and Mortality Weekly Report67 (2018).", +Vibrio anguillarum,55601,,,,putative,,,"Sinatra, Jennifer A. ""Notes from the field: Fatal Vibrio anguillarum infection in an immunocompromised patient-Maine, 2017.""ÊMMWR. Morbidity and Mortality Weekly ReportÊ67 (2018).", Streptococcus vestibularis,1343,,,,established,,,"Simsek, A. Dilek, et al. ""Streptococcus vestibularis bacteremia following dental extraction in a patient on long-term hemodialysis: a case report.""NDT plus1.4 (2008): 276.", Actinomadura mexicana,134959,,,,putative,,,"Siddig, Emmanuel Edwar, et al. ""Human actinomycetoma caused by Actinomadura mexicana in Sudan: the first report.""Transactions of The Royal Society of Tropical Medicine and Hygiene115.4 (2021): 406-410.", Gemella sanguinis,84135,,,,established,,,"Shukla, Sanjay K., et al. ""Second case of infective endocarditis caused by Gemella sanguinis.""WMJ-MADISON-101.3 (2002): 37-39.", @@ -787,16 +787,16 @@ Nocardia beijingensis,95162,,,,established,,,"Sheikh-Taha, Marwan, and Lourdes C Microbacterium yannicii,671622,,,,putative,,,"Sharma, Poonam, et al. ""Phenotypic and genotypic properties of Microbacterium yannicii, a recently described multidrug resistant bacterium isolated from a lung transplanted patient with cystic fibrosis in France.""BMC microbiology13.1 (2013): 1-11.", Achromobacter denitrificans,32002,,,,established,,,"Sgrelli, Alessio, et al. ""Achromobacter denitrificans renal abscess.""New Microbiol35.2 (2012): 245-247.", Mycobacterium basiliense,2094119,,,,putative,,,"Seth-Smith, Helena, et al. ""Discovery and characterization of Mycobacterium basiliense sp. nov., a nontuberculous Mycobacterium isolated from human lungs.""Frontiers in microbiology9 (2019): 3184.", -Campylobacter ureolyticus,827,,,,established,,,"Serichantalergs, Oralak, et al. ""Incidence of Campylobacter concisus and C. ureolyticus in travelers diarrhea cases and asymptomatic controls in Nepal and Thailand.""Gut pathogens9.1 (2017): 1-7.", +Campylobacter ureolyticus,827,,,,established,,,"Serichantalergs, Oralak, et al. ""Incidence of Campylobacter concisus and C. ureolyticus in travelers diarrhea cases and asymptomatic controls in Nepal and Thailand.""ÊGut pathogensÊ9.1 (2017): 1-7.", Pseudomonas fulva,47880,,,,established,,,"Seok, Yoonmi, et al. ""First report of bloodstream infection caused by Pseudomonas fulva.""Journal of clinical microbiology48.7 (2010): 2656-2657.", Aerococcus sanguicola,119206,,,,established,,,"Senneby, Erik, et al. ""Bacteremia with Aerococcus sanguinicola: case series with characterization of virulence properties.""Open forum infectious diseases. Vol. 1. No. 1. Oxford University Press, 2014.", Raoultella ornithinolytica,54291,,,,established,,,"Seng, Piseth, et al. ""Emerging role of Raoultella ornithinolytica in human infections: a series of cases and review of the literature.""International Journal of Infectious Diseases45 (2016): 65-71.", -Micrococcus luteus,1270,,,,established,,,"Seifert, Harald, Matthias Kaltheuner, and Francoise Perdreau-Remington. ""Micrococcus luteus endocarditis: case report and review of the literature.""Zentralblatt fur Bakteriologie282.4 (1995): 431-435.", +Micrococcus luteus,1270,,,,established,,,"Seifert, Harald, Matthias Kaltheuner, and Francoise Perdreau-Remington. ""Micrococcus luteus endocarditis: case report and review of the literature.""ÊZentralblatt fur BakteriologieÊ282.4 (1995): 431-435.", Pandoraea fibrosis,1891094,,,,putative,,,"See-Too, Wah Seng, et al. ""Pandoraea fibrosis sp. nov., a novel Pandoraea species isolated from clinical respiratory samples.""International journal of systematic and evolutionary microbiology69.3 (2019): 645-651.", Mycobacterium lepromatosis,480418,,,,established,,,"Scollard, David M. ""Infection with Mycobacterium lepromatosis.""The American journal of tropical medicine and hygiene95.3 (2016): 500.", Tissierella carlieri,689904,,,,putative,,,"Schweizer, Mona, et al. ""Chronic osteomyelitis due to tissierella carlieri: first case.""Open forum infectious diseases. Vol. 3. No. 1. Oxford University Press, 2016.", Aerococcus urinae,1376,,,,established,,,"Schuur, P. M. H., et al. ""Urinary tract infections with Aerococcus urinae in the south of The Netherlands.""European Journal of Clinical Microbiology and Infectious Diseases16.12 (1997): 871-875.", -Aureimonas altamirensis,370622,,,,established,,,"Schrottner, Percy, et al. ""First report on the isolation of Aureimonas altamirensis from a patient with peritonitis.""International Journal of Infectious Diseases29 (2014): 71-73.", +Aureimonas altamirensis,370622,,,,established,,,"Schrottner, Percy, et al. ""First report on the isolation of Aureimonas altamirensis from a patient with peritonitis.""ÊInternational Journal of Infectious DiseasesÊ29 (2014): 71-73.", Brucella inopinata,1218315,,,,putative,,,"Scholz, Holger C., et al. ""Brucella inopinata sp. nov., isolated from a breast implant infection.""International journal of systematic and evolutionary microbiology60.4 (2010): 801-808.", Streptococcus infantarius,102684,,,,established,,,"Schlegel, Laurent, et al. ""Streptococcus infantarius sp. nov., Streptococcus infantarius subsp. infantarius subsp. nov. and Streptococcus infantarius subsp. coli subsp. nov., isolated from humans and food.""International journal of systematic and evolutionary microbiology50.4 (2000): 1425-1434.", Mycobacterium boenickei,146017,,,,putative,,,"Schinsky, Mark F., et al. ""Taxonomic variation in the Mycobacterium fortuitum third biovariant complex: description of Mycobacterium boenickei sp. nov., Mycobacterium houstonense sp. nov., Mycobacterium neworleansense sp. nov. and Mycobacterium brisbanense sp. nov. and recognition of Mycobacterium porcinum from human clinical isolates.""International Journal of Systematic and Evolutionary Microbiology54.5 (2004): 1653-1667.", @@ -824,15 +824,15 @@ Paenibacillus massiliensis,1333859,,,,putative,,,"Roux, Veronique, and Didier Ra Paenibacillus sanguinis,1122925,,,,putative,,,"Roux, Veronique, and Didier Raoult. ""Paenibacillus massiliensis sp. nov., Paenibacillus sanguinis sp. nov. and Paenibacillus timonensis sp. nov., isolated from blood cultures.""International journal of systematic and evolutionary microbiology54.4 (2004): 1049-1054.", Paenibacillus timonensis,225915,,,,putative,,,"Roux, Veronique, and Didier Raoult. ""Paenibacillus massiliensis sp. nov., Paenibacillus sanguinis sp. nov. and Paenibacillus timonensis sp. nov., isolated from blood cultures.""International journal of systematic and evolutionary microbiology54.4 (2004): 1049-1054.", Brevibacterium massiliense,1701,,,,putative,,,"Roux, Veronique, and Didier Raoult. ""Brevibacterium massiliense sp. nov., isolated from a human ankle discharge.""International journal of systematic and evolutionary microbiology59.8 (2009): 1960-1964.", -Bartonella vinsonii,33047,,,,established,,,"Roux, Veronique, et al. ""Bartonella vinsonii subsp. berkhoffii as an agent of afebrile blood culture-negative endocarditis in a human.""Journal of Clinical Microbiology38.4 (2000): 1698-1700.", +Bartonella vinsonii,33047,,,,established,,,"Roux, Veronique, et al. ""Bartonella vinsonii subsp. berkhoffii as an agent of afebrile blood culture-negative endocarditis in a human.""ÊJournal of Clinical MicrobiologyÊ38.4 (2000): 1698-1700.", Ruminococcus gnavus,1264,commensal,,gut,established,,,"Roux, Anne-Laure, et al. ""Ruminococcus gnavus total hip arthroplasty infection in a 62-year-old man with ulcerative colitis.""Journal of clinical microbiology53.4 (2015): 1428-1430.", -Dialister pneumosintes,39950,,,,established,,,"Rousee, J. M., et al. ""Dialister pneumosintes associated with human brain abscesses.""Journal of clinical microbiology40.10 (2002): 3871-3873.", +Dialister pneumosintes,39950,,,,established,,,"Rousee, J. M., et al. ""Dialister pneumosintes associated with human brain abscesses.""ÊJournal of clinical microbiologyÊ40.10 (2002): 3871-3873.", Mycobacterium heckeshornense,110505,,,,established,,,"Roth, Andreas, et al. ""Mycobacterium heckeshornense sp. nov., a new pathogenic slowly growing Mycobacterium sp. causing cavitary lung disease in an immunocompetent patient.""Journal of clinical microbiology38.11 (2000): 4102-4107.", -Klebsiella variicola,244366,,,,established,,,"Rosenblueth, Monica, et al. ""Klebsiella variicola, a novel species with clinical and plant-associated isolates.""Systematic and applied microbiology27.1 (2004): 27-35.", +Klebsiella variicola,244366,,,,established,,,"Rosenblueth, Monica, et al. ""Klebsiella variicola, a novel species with clinical and plant-associated isolates.""ÊSystematic and applied microbiologyÊ27.1 (2004): 27-35.", Pasteurella bettyae,752,,,,established,,,"Rosales-Castillo, Antonio, et al. ""Emerging presence of urethritis and balanitis by Pasteurella bettyae.""Infectious Diseases Now(2021).", Pontibacter altruii,nan,,,,putative,,,"Roiko, Marijo, Meghan May, and Ryan F. Relich. ""Characterization of Pontibacter altruii, sp. nov., isolated from a human blood culture.""New microbes and new infections19 (2017): 71-77.", Abiotrophia elegans,nan,,,,putative,,,"Roggenkamp, Andreas, et al. ""Abiotrophia elegans sp. nov., a possible pathogen in patients with culture-negative endocarditis.""Journal of Clinical Microbiology36.1 (1998): 100-104.", -Nocardia mexicana,279262,,,,established,,,"Rodriguez-Nava, Veronica, et al. ""Nocardia mexicana sp. nov., a new pathogen isolated from human mycetomas.""Journal of clinical microbiology42.10 (2004): 4530-4535.", +Nocardia mexicana,279262,,,,established,,,"Rodriguez-Nava, Veronica, et al. ""Nocardia mexicana sp. nov., a new pathogen isolated from human mycetomas.""ÊJournal of clinical microbiologyÊ42.10 (2004): 4530-4535.", Staphylococcus lentus,985002,,,,established,,,"Rivera, Maite, et al. ""Staphylococcus lentus peritonitis: a case report.""Peritoneal dialysis international: journal of the International Society for Peritoneal Dialysis34.4 (2014): 469.", Roseomonas cervicalis,nan,,,,putative,,,"Rihs, John D., et al. ""Roseomonas, a new genus associated with bacteremia and other human infections.""Journal of clinical microbiology31.12 (1993): 3275-3283.", Fusobacterium naviforme,68766,commensal,blood,,putative,,,"Rifaat, Mario, et al. ""CME: Fusobacterium nucleatum/naviforme-a Rare but Serious Cause for Pyogenic Liver Abscesses."" Praxis 107.19 (2018): 1007-1012.", @@ -845,7 +845,7 @@ Turicella otitidis,nan,,,,established,,,"Reynolds, Steven J., Marcel Behr, and J Helcobacillus massiliensis,521392,,,,putative,,,"Renvoise, Aurelie, et al. ""Helcobacillus massiliensis gen. nov., sp. nov., a novel representative of the family Dermabacteraceae isolated from a patient with a cutaneous discharge.""International journal of systematic and evolutionary microbiology59.9 (2009): 2346-2351.", Actinomyces timonensis,521393,,,,putative,,,"Renvoise, Aurelie, Didier Raoult, and Veronique Roux. ""Actinomyces timonensis sp. nov., isolated from a human clinical osteo-articular sample.""International journal of systematic and evolutionary microbiology60.7 (2010): 1516-1521.", Actinomyces massiliensis,nan,,,,putative,,,"Renvoise, Aurelie, Didier Raoult, and Veronique Roux. ""Actinomyces massiliensis sp. nov., isolated from a patient blood culture.""International journal of systematic and evolutionary microbiology59.3 (2009): 540-544.", -Corynebacterium hansenii,394964,,,,putative,,,"Renaud, Francois NR, et al. ""Corynebacterium hansenii sp. nov., an alpha-glucosidase-negative bacterium related to Corynebacterium xerosis.""International journal of systematic and evolutionary microbiology57.5 (2007): 1113-1116.", +Corynebacterium hansenii,394964,,,,putative,,,"Renaud, Francois NR, et al. ""Corynebacterium hansenii sp. nov., an alpha-glucosidase-negative bacterium related to Corynebacterium xerosis.""ÊInternational journal of systematic and evolutionary microbiologyÊ57.5 (2007): 1113-1116.", Corynebacterium freneyi,134034,,,,putative,,,"Renaud, F. N., et al. ""Corynebacterium freneyi sp. nov., alpha-glucosidase-positive strains related to Corynebacterium xerosis.""International journal of systematic and evolutionary microbiology51.5 (2001): 1723-1728.", Oerskovia turbata,1713,,,,established,,,"Reller, L. Barth, et al. ""Bacterial endocarditis caused by Oerskovia turbata.""Annals of internal Medicine83.5 (1975): 664-666.", Legionella indianapolisensis,nan,,,,putative,,,"Relich, R. F., et al. ""Legionella indianapolisensis sp. nov., isolated from a patient with pulmonary abscess.""International Journal of Infectious Diseases69 (2018): 26-28.", @@ -862,10 +862,10 @@ Mycobacterium fragae,1260918,,,,putative,,,"Ramos, Jesus Pais, et al. ""Mycobact Actinomyces graevenitzii,nan,,,,established,,,"Ramos, Cristina Pascual, et al. ""Actinomyces graevenitzii sp. nov., isolated from human clinical specimens.""International Journal of Systematic and Evolutionary Microbiology47.3 (1997): 885-888.", Leptospira venezuelensis,1958811,,,,putative,,,"Puche, Rafael, et al. ""Leptospira venezuelensis sp. nov., a new member of the intermediate group isolated from rodents, cattle and humans.""International journal of systematic and evolutionary microbiology68.2 (2018): 513-517.", Borrelia mayonii,1674146,,,,established,,,"Pritt, Bobbi S., et al. ""Borrelia mayonii sp. nov., a member of the Borrelia burgdorferi sensu lato complex, detected in patients and ticks in the upper midwestern United States.""International journal of systematic and evolutionary microbiology66.11 (2016): 4878.", -Brachyspira pilosicoli,52584,,,,established,,,"Prim, Nuria, et al. ""Bloodstream infection due to Brachyspira pilosicoli in a patient with multiorgan failure.""Journal of Clinical Microbiology49.10 (2011): 3697-3699.", -Rickettsia mongolotimonae,nan,,,,established,,,"Pretorius, Anne-Marie, and Richard J. Birtles. ""Rickettsia mongolotimonae infection in South Africa.""Emerging infectious diseases10.1 (2004): 125.", +Brachyspira pilosicoli,52584,,,,established,,,"Prim, Nuria, et al. ""Bloodstream infection due to Brachyspira pilosicoli in a patient with multiorgan failure.""ÊJournal of Clinical MicrobiologyÊ49.10 (2011): 3697-3699.", +Rickettsia mongolotimonae,nan,,,,established,,,"Pretorius, Anne-Marie, and Richard J. Birtles. ""Rickettsia mongolotimonae infection in South Africa.""ÊEmerging infectious diseasesÊ10.1 (2004): 125.", Delftia tsuruhatensis,180282,,,,established,,,"Preiswerk, Benjamin, et al. ""Human infection with Delftia tsuruhatensis isolated from a central venous catheter.""Journal of medical microbiology60.2 (2011): 246-248.", -Helicobacter canis,29419,,,,established,,,"Prag, Jrgen, Jens Blom, and Karen A. Krogfelt. ""Helicobacter canis bacteraemia in a 7-month-old child.""FEMS Immunology & Medical Microbiology50.2 (2007): 264-267.", +Helicobacter canis,29419,,,,established,,,"Prag, Jrgen, Jens Blom, and Karen A. Krogfelt. ""Helicobacter canis bacteraemia in a 7-month-old child.""FEMS Immunology & Medical Microbiology50.2 (2007): 264-267.", Peptostreptococcus magnus,1262,,,,established,,,"Pouedras, P., et al. ""Prosthetic valve endocarditis and paravalvular abscess caused by Peptostreptococcus magnus.""Clinical infectious diseases15.1 (1992): 185-185.", Mycobacterium elephantis,81858,,,,established,,,"Potters, Danielle, et al. ""Recovery of Mycobacterium elephantis from sputum of a patient in Belgium.""Journal of clinical microbiology41.3 (2003): 1344-1344.", Shewanella haliotis,nan,,,,established,,,"Poovorawan, Kittiyod, et al. ""Shewanella haliotis associated with severe soft tissue infection, Thailand, 2012.""Emerging infectious diseases19.6 (2013): 1019.", @@ -880,8 +880,8 @@ Mycobacterium triplex,47839,,,,established,,,"Piersimoni, Claudio, et al. ""Myco Chlamydia abortus,83555,,,,established,,,"Pichon, Nicolas, et al. ""Chlamydia abortus in pregnant woman with acute respiratory distress syndrome.""Emerging infectious diseases26.3 (2020): 628.", Streptococcus thoraltensis,55085,,,,established,,,"Petridis, Nikolaos, et al. ""Streptococcus thoraltensis bacteremia: First described case as a fever of unknown origin in human.""Case reports in infectious diseases2018 (2018).", Ehrlichia canis,944,,,,established,,,"Perez, Miriam, et al. ""Human infection with Ehrlichia canis accompanied by clinical signs in Venezuela.""Annals of the New York Academy of Sciences1078.1 (2006): 110-117.", -Acremonium egyptiacum,nan,opportunistic,,,established,,,"Perez_Cantero, Alba, and Josep Guarro. ""Sarocladium and Acremonium infections: new faces of an old opportunistic fungus.""Mycoses63.11 (2020): 1203-1214.", -Streptococcus urinalis,149016,,,,putative,,,"Peltroche-Llacsahuanga, Heidrun, Bjorn Frye, and Gerhard Haase. ""Isolation of Streptococcus urinalis from a human blood culture.""Journal of medical microbiology61.5 (2012): 740-742.", +Acremonium egyptiacum,nan,opportunistic,,,established,,,"Perez_Cantero, Alba, and Josep Guarro. ""Sarocladium and Acremonium infections: new faces of an old opportunistic fungus.""ÊMycosesÊ63.11 (2020): 1203-1214.", +Streptococcus urinalis,149016,,,,putative,,,"Peltroche-Llacsahuanga, Heidrun, Bjorn Frye, and Gerhard Haase. ""Isolation of Streptococcus urinalis from a human blood culture.""ÊJournal of medical microbiologyÊ61.5 (2012): 740-742.", Solobacterium moorei,102148,,,,established,,,"Pedersen, Rune Micha, Hanne Marie Holt, and Ulrik Stenz Justesen. ""Solobacterium moorei bacteremia: identification, antimicrobial susceptibility, and clinical characteristics.""Journal of clinical microbiology49.7 (2011): 2766-2768.", Legionella cardiaca,1071983,,,,putative,,,"Pearce, Meghan M., et al. ""Legionella cardiaca sp. nov., isolated from a case of native valve endocarditis in a human heart.""International journal of systematic and evolutionary microbiology62.Pt 12 (2012): 2946.", Klebsiella grimontii,2058152,,,,established,,,"Passet, Virginie, and Sylvain Brisse. ""Description of Klebsiella grimontii sp. nov.""International journal of systematic and evolutionary microbiology68.1 (2018): 377-381.", @@ -895,38 +895,38 @@ Staphylococcus hominis,1290,,,,established,,,"Palazzo, Izabel Cristina Vanzato, Staphylococcus borealis,2742203,,,,established,,,"Pain, Maria, et al. ""Staphylococcus borealis sp. nov., isolated from human skin and blood.""International Journal of Systematic and Evolutionary Microbiology70.12 (2020): 6067-6078.", Fenollaria massiliensis,938288,,,,putative,,,"Pagnier, Isabelle, et al. ""Non-contiguous finished genome sequence and description of Fenollaria massiliensis gen. nov., sp. nov., a new genus of anaerobic bacterium.""Standards in genomic sciences9.3 (2014): 704-717.", Vibrio injenensis,1307414,,,,putative,,,"Paek, Jayoung, et al. ""Vibrio injenensis sp. nov., isolated from human clinical specimens.""Antonie Van Leeuwenhoek110.1 (2017): 145-152.", -Myroides phaeus,702745,,,,putative,,,"Perez-Lazo, G., et al. ""First report of Myroides phaeus bacteraemia identified by Polymerase chain reaction and genetic sequencing.""IDCases19 (2020): e00695.", -Helcococcus kunzii,40091,,,,established,,,"Perez-Jorge, Conchita, et al. ""Prosthetic joint infection caused by Helcococcus kunzii.""Journal of clinical microbiology50.2 (2012): 528-530.", +Myroides phaeus,702745,,,,putative,,,"Perez-Lazo, G., et al. ""First report of Myroides phaeus bacteraemia identified by Polymerase chain reaction and genetic sequencing.""ÊIDCasesÊ19 (2020): e00695.", +Helcococcus kunzii,40091,,,,established,,,"Perez-Jorge, Conchita, et al. ""Prosthetic joint infection caused by Helcococcus kunzii.""ÊJournal of clinical microbiologyÊ50.2 (2012): 528-530.", Pseudoclavibacter bifida,272241,,,,putative,,,"Oyaert, Matthijs, et al. ""First case of Pseudoclavibacter bifida bacteremia in an immunocompromised host with chronic obstructive pulmonary disease (COPD).""Journal of clinical microbiology51.6 (2013): 1973-1976.", Corynebacterium resistens,258224,,,,established,,,"Otsuka, Yoshihito, et al. ""Corynebacterium resistens sp. nov., a new multidrug-resistant coryneform bacterium isolated from human infections.""Journal of clinical microbiology43.8 (2005): 3713-3717.", Hafnia paralvei,546367,,,,putative,,,"Osuka, Hanako, et al. ""A case of bacteremia caused by Hafnia paralvei.""Journal of Infection and Chemotherapy17.6 (2011): 855-857.", Acidovorax oryzae,862720,,,,putative,,,"Orsborne, Christopher, et al. ""Acidovorax oryzae catheter-associated bloodstream infection.""Journal of clinical microbiology52.12 (2014): 4421-4424.", Vibrio cidicii,1763883,,,,established,,,"Orata, Fabini D., et al. ""Characterization of clinical and environmental isolates of Vibrio cidicii sp. nov., a close relative of Vibrio navarrensis.""International journal of systematic and evolutionary microbiology66.10 (2016): 4148-4155.", -Aspergillus niger,5061,opportunistic,,,established,,,"One Health: Fungal Pathogens of Humans, Animals, and Plants: Report on an American Academy of Microbiology Colloquium held in Washington, DC, on October 18, 2017. Washington (DC): American Society for Microbiology; 2019.ÊAvailable from: https://www.ncbi.nlm.nih.gov/books/NBK549988/Êdoi: 10.1128/AAMCol.18Oct.2017", -Aspergillus flavus,332952,opportunistic,,,established,,,"One Health: Fungal Pathogens of Humans, Animals, and Plants: Report on an American Academy of Microbiology Colloquium held in Washington, DC, on October 18, 2017. Washington (DC): American Society for Microbiology; 2019.ÊAvailable from: https://www.ncbi.nlm.nih.gov/books/NBK549988/Êdoi: 10.1128/AAMCol.18Oct.2017", -Aspergillus terreus,341663,opportunistic,,,established,,,"One Health: Fungal Pathogens of Humans, Animals, and Plants: Report on an American Academy of Microbiology Colloquium held in Washington, DC, on October 18, 2017. Washington (DC): American Society for Microbiology; 2019.ÊAvailable from: https://www.ncbi.nlm.nih.gov/books/NBK549988/Êdoi: 10.1128/AAMCol.18Oct.2017", +Aspergillus niger,5061,opportunistic,,,established,,,"One Health: Fungal Pathogens of Humans, Animals, and Plants: Report on an American Academy of Microbiology Colloquium held in Washington, DC, on October 18, 2017. Washington (DC): American Society for Microbiology; 2019.ÊAvailable from: https://www.ncbi.nlm.nih.gov/books/NBK549988/Êdoi: 10.1128/AAMCol.18Oct.2017", +Aspergillus flavus,332952,opportunistic,,,established,,,"One Health: Fungal Pathogens of Humans, Animals, and Plants: Report on an American Academy of Microbiology Colloquium held in Washington, DC, on October 18, 2017. Washington (DC): American Society for Microbiology; 2019.ÊAvailable from: https://www.ncbi.nlm.nih.gov/books/NBK549988/Êdoi: 10.1128/AAMCol.18Oct.2017", +Aspergillus terreus,341663,opportunistic,,,established,,,"One Health: Fungal Pathogens of Humans, Animals, and Plants: Report on an American Academy of Microbiology Colloquium held in Washington, DC, on October 18, 2017. Washington (DC): American Society for Microbiology; 2019.ÊAvailable from: https://www.ncbi.nlm.nih.gov/books/NBK549988/Êdoi: 10.1128/AAMCol.18Oct.2017", Raoultella planticola,575,,,,established,,,"Olson, D. S., et al. ""A novel case of Raoultella planticola urinary tract infection.""Infection41.1 (2013): 259-261.", -Paracoccidioides americana,nan,opportunistic,,,established,,,"Oliveira, Manuela, et al. ""Clinical Manifestations of Human Exposure to Fungi.""Journal of Fungi9.3 (2023): 381.", -Paracoccidioides restrepiensis,nan,opportunistic,,,established,,,"Oliveira, Manuela, et al. ""Clinical Manifestations of Human Exposure to Fungi.""Journal of Fungi9.3 (2023): 381.", -Paracoccidioides venezuelensis,nan,opportunistic,,,established,,,"Oliveira, Manuela, et al. ""Clinical Manifestations of Human Exposure to Fungi.""Journal of Fungi9.3 (2023): 381.", -Paracoccidioides lutzii,502779,opportunistic,,,established,,,"Oliveira, Manuela, et al. ""Clinical Manifestations of Human Exposure to Fungi.""Journal of Fungi9.3 (2023): 381.", +Paracoccidioides americana,nan,opportunistic,,,established,,,"Oliveira, Manuela, et al. ""Clinical Manifestations of Human Exposure to Fungi.""ÊJournal of FungiÊ9.3 (2023): 381.", +Paracoccidioides restrepiensis,nan,opportunistic,,,established,,,"Oliveira, Manuela, et al. ""Clinical Manifestations of Human Exposure to Fungi.""ÊJournal of FungiÊ9.3 (2023): 381.", +Paracoccidioides venezuelensis,nan,opportunistic,,,established,,,"Oliveira, Manuela, et al. ""Clinical Manifestations of Human Exposure to Fungi.""ÊJournal of FungiÊ9.3 (2023): 381.", +Paracoccidioides lutzii,502779,opportunistic,,,established,,,"Oliveira, Manuela, et al. ""Clinical Manifestations of Human Exposure to Fungi.""ÊJournal of FungiÊ9.3 (2023): 381.", Treponema denticola,158,,,,established,,,"Okuda, Katsuji, et al. ""Detection of Treponema denticola in atherosclerotic lesions.""Journal of Clinical Microbiology39.3 (2001): 1114-1117.", Bacteroides heparinolyticus,28113,,,,established,,,"OKUDA, KATSUJI, et al. ""Bacteroides heparinolyticus sp. nov. isolated from humans with periodontitis.""International Journal of Systematic and Evolutionary Microbiology35.4 (1985): 438-442.", Bartonella grahamii,33045,,,,putative,,,"Oksi, Jarmo, et al. ""Cat scratch disease caused by Bartonella grahamii in an immunocompromised patient.""Journal of clinical microbiology51.8 (2013): 2781-2784.", Granulicatella elegans,137732,,,,established,,,"Ohara-Nemoto, Yuko, et al. ""Infective endocarditis caused by Granulicatella elegans originating in the oral cavity.""Journal of clinical microbiology43.3 (2005): 1405-1407.", -Erwinia persicinus,55211,,,,putative,,,"OHara, Caroline M., et al. ""First report of a human isolate of Erwinia persicinus.""Journal of Clinical Microbiology36.1 (1998): 248-250.", -Fusarium oxysporum,2867550,opportunistic,,,established,,,"Nucci, Marcio, and Elias Anaissie. ""Fusarium infections in immunocompromised patients.""Clinical microbiology reviews20.4 (2007): 695-704.", -Fusarium verticillioidis,334819,opportunistic,,,established,,,"Nucci, Marcio, and Elias Anaissie. ""Fusarium infections in immunocompromised patients.""Clinical microbiology reviews20.4 (2007): 695-704.", -Fusarium moniliforme,nan,opportunistic,,,established,,,"Nucci, Marcio, and Elias Anaissie. ""Fusarium infections in immunocompromised patients.""Clinical microbiology reviews20.4 (2007): 695-704.", -Staphylococcus equorum,246432,,,,established,,,"Novakova, Dana, et al. ""Staphylococcus equorum and Staphylococcus succinus isolated from human clinical specimens.""Journal of medical microbiology55.5 (2006): 523-528.", -Staphylococcus succinus,61015,,,,established,,,"Novakova, Dana, et al. ""Staphylococcus equorum and Staphylococcus succinus isolated from human clinical specimens.""Journal of medical microbiology55.5 (2006): 523-528.", +Erwinia persicinus,55211,,,,putative,,,"OHara, Caroline M., et al. ""First report of a human isolate of Erwinia persicinus.""ÊJournal of Clinical MicrobiologyÊ36.1 (1998): 248-250.", +Fusarium oxysporum,2867550,opportunistic,,,established,,,"Nucci, Marcio, and Elias Anaissie. ""Fusarium infections in immunocompromised patients.""ÊClinical microbiology reviewsÊ20.4 (2007): 695-704.", +Fusarium verticillioidis,334819,opportunistic,,,established,,,"Nucci, Marcio, and Elias Anaissie. ""Fusarium infections in immunocompromised patients.""ÊClinical microbiology reviewsÊ20.4 (2007): 695-704.", +Fusarium moniliforme,nan,opportunistic,,,established,,,"Nucci, Marcio, and Elias Anaissie. ""Fusarium infections in immunocompromised patients.""ÊClinical microbiology reviewsÊ20.4 (2007): 695-704.", +Staphylococcus equorum,246432,,,,established,,,"Novakova, Dana, et al. ""Staphylococcus equorum and Staphylococcus succinus isolated from human clinical specimens.""ÊJournal of medical microbiologyÊ55.5 (2006): 523-528.", +Staphylococcus succinus,61015,,,,established,,,"Novakova, Dana, et al. ""Staphylococcus equorum and Staphylococcus succinus isolated from human clinical specimens.""ÊJournal of medical microbiologyÊ55.5 (2006): 523-528.", Nocardia barduliensis,2736643,,,,putative,,,"Nouioui, Imen, et al. ""Genomic virulence features of two novel species Nocardia barduliensis sp. nov. and Nocardia gipuzkoensis sp. nov., isolated from patients with chronic pulmonary diseases.""Microorganisms8.10 (2020): 1517.", Nocardia gipuzkoensis,2749991,,,,putative,,,"Nouioui, Imen, et al. ""Genomic virulence features of two novel species Nocardia barduliensis sp. nov. and Nocardia gipuzkoensis sp. nov., isolated from patients with chronic pulmonary diseases.""Microorganisms8.10 (2020): 1517.", Actinomyces urogenitalis,103621,,,,established,,,"Nikolaitchouk, Natalia, et al. ""Characterization of Actinomyces isolates from samples from the human urogenital tract: description of Actinomyces urogenitalis sp. nov.""International journal of systematic and evolutionary microbiology50.4 (2000): 1649-1654.", Yersinia canariae,2607663,,,,putative,,,"Nguyen, Scott V., et al. ""Yersinia canariae sp. nov., isolated from a human yersiniosis case.""International journal of systematic and evolutionary microbiology70.4 (2020): 2382-2387.", Mycobacterium thermoresistibile,1797,,,,established,,,"Neonakis, I. K., et al. ""Mycobacterium thermoresistibile: case report of a rarely isolated mycobacterium from Europe and review of literature.""Indian journal of medical microbiology27.3 (2009): 264-267.", -Acinetobacter nosocomialis,106654,,,,established,,,"Nemec, Alexandr, et al. ""Genotypic and phenotypic characterization of the Acinetobacter calcoaceticus - Acinetobacter baumannii complex with the proposal of Acinetobacter pittii sp. nov.(formerly Acinetobacter genomic species 3) and Acinetobacter nosocomialis sp. nov.(formerly Acinetobacter genomic species 13TU).""Research in microbiology162.4 (2011): 393-404.", -Acinetobacter pittii,472,,,,established,,,"Nemec, Alexandr, et al. ""Genotypic and phenotypic characterization of the Acinetobacter calcoaceticus - Acinetobacter baumannii complex with the proposal of Acinetobacter pittii sp. nov.(formerly Acinetobacter genomic species 3) and Acinetobacter nosocomialis sp. nov.(formerly Acinetobacter genomic species 13TU).""Research in microbiology162.4 (2011): 393-404.", +Acinetobacter nosocomialis,106654,,,,established,,,"Nemec, Alexandr, et al. ""Genotypic and phenotypic characterization of the Acinetobacter calcoaceticus - Acinetobacter baumannii complex with the proposal of Acinetobacter pittii sp. nov.(formerly Acinetobacter genomic species 3) and Acinetobacter nosocomialis sp. nov.(formerly Acinetobacter genomic species 13TU).""ÊResearch in microbiologyÊ162.4 (2011): 393-404.", +Acinetobacter pittii,472,,,,established,,,"Nemec, Alexandr, et al. ""Genotypic and phenotypic characterization of the Acinetobacter calcoaceticus - Acinetobacter baumannii complex with the proposal of Acinetobacter pittii sp. nov.(formerly Acinetobacter genomic species 3) and Acinetobacter nosocomialis sp. nov.(formerly Acinetobacter genomic species 13TU).""ÊResearch in microbiologyÊ162.4 (2011): 393-404.", Acinetobacter schindleri,108981,,,,established,,,"Nemec, Alexandr, et al. ""Acinetobacter ursingii sp. nov. and Acinetobacter schindleri sp. nov., isolated from human clinical specimens.""International journal of systematic and evolutionary microbiology51.5 (2001): 1891-1899.", Acinetobacter ursingii,108980,,,,established,,,"Nemec, Alexandr, et al. ""Acinetobacter ursingii sp. nov. and Acinetobacter schindleri sp. nov., isolated from human clinical specimens.""International journal of systematic and evolutionary microbiology51.5 (2001): 1891-1899.", Acinetobacter parvus,134533,,,,established,,,"Nemec, Alexandr, et al. ""Acinetobacter parvus sp. nov., a small-colony-forming species isolated from human clinical specimens.""International journal of systematic and evolutionary microbiology53.5 (2003): 1563-1567.", @@ -934,7 +934,7 @@ Acinetobacter bereziniae,106648,,,,established,,,"Nemec, Alexandr, et al. ""Acin Acinetobacter guillouiae,106649,,,,established,,,"Nemec, Alexandr, et al. ""Acinetobacter bereziniae sp. nov. and Acinetobacter guillouiae sp. nov., to accommodate Acinetobacter genomic species 10 and 11, respectively.""International journal of systematic and evolutionary microbiology60.4 (2010): 896-903.", Acinetobacter beijerinckii,262668,,,,established,,,"Nemec, Alexandr, et al. ""Acinetobacter beijerinckii sp nov and Acinetobacter gyllenbergii sp nov., haemolytic organisms isolated from humans."" International journal of systematic and evolutionary microbiology 59.Part 1 (2009): 118-124.", Acinetobacter gyllenbergii,134534,,,,established,,,"Nemec, Alexandr, et al. ""Acinetobacter beijerinckii sp nov and Acinetobacter gyllenbergii sp nov., haemolytic organisms isolated from humans."" International journal of systematic and evolutionary microbiology 59.Part 1 (2009): 118-124.", -Pseudonocardia carboxydivorans,60912,,,,putative,,,"Navarro-Martinez, Amalia, et al. ""Pseudonocardia carboxydivorans in human cerebrospinal fluid: a case report in a patient with traumatic brain injury.""BMC Infectious Diseases17 (2017): 1-4.", +Pseudonocardia carboxydivorans,60912,,,,putative,,,"Navarro-Martinez, Amalia, et al. ""Pseudonocardia carboxydivorans in human cerebrospinal fluid: a case report in a patient with traumatic brain injury.""ÊBMC Infectious DiseasesÊ17 (2017): 1-4.", Orthopoxvirus Vaccinia virus,10245,,,,established,,,"National Institute of Allergy and Infectious Diseases. ""Emerging Infectious Diseases Pathogens."" National Institute of Allergy and Infectious Diseases, Date of Publication (if available), URL: https://www.niaid.nih.gov/research/emerging-infectious-diseases-pathogens.", Orthopoxvirus Variola virus,10255,,,,established,,,"National Institute of Allergy and Infectious Diseases. ""Emerging Infectious Diseases Pathogens."" National Institute of Allergy and Infectious Diseases, Date of Publication (if available), URL: https://www.niaid.nih.gov/research/emerging-infectious-diseases-pathogens.", Orthopoxvirus Monkeypox virus,10244,,,,established,,,"National Institute of Allergy and Infectious Diseases. ""Emerging Infectious Diseases Pathogens."" National Institute of Allergy and Infectious Diseases, Date of Publication (if available), URL: https://www.niaid.nih.gov/research/emerging-infectious-diseases-pathogens.", @@ -946,8 +946,8 @@ Mogibacterium neglectum,114528,,,,putative,,,"Nakazawa, Futoshi, et al. ""Taxono Mogibacterium pumilum,86332,,,,putative,,,"Nakazawa, Futoshi, et al. ""Description of Mogibacterium pumilum gen. nov., sp. nov. and Mogibacterium vescum gen. nov., sp. nov., and reclassification of Eubacterium timidum (Holdeman et al. 1980) as Mogibacterium timidum gen. nov., comb. nov.""International journal of systematic and evolutionary microbiology50.2 (2000): 679-688.", Mogibacterium vescum,114527,,,,putative,,,"Nakazawa, Futoshi, et al. ""Description of Mogibacterium pumilum gen. nov., sp. nov. and Mogibacterium vescum gen. nov., sp. nov., and reclassification of Eubacterium timidum (Holdeman et al. 1980) as Mogibacterium timidum gen. nov., comb. nov.""International journal of systematic and evolutionary microbiology50.2 (2000): 679-688.", Cryptobacterium curtum,84163,,,,putative,,,"Nakazawa, Futoshi, et al. ""Cryptobacterium curtum gen. nov., sp. nov., a new genus of Gram-positive anaerobic rod isolated from human oral cavities.""International Journal of Systematic and Evolutionary Microbiology49.3 (1999): 1193-1200.", -Haemophilus sputorum,1078480,,,,established,,,"Norskov-Lauritsen, Niels, et al. ""Identification of haemolytic Haemophilus species isolated from human clinical specimens and description of Haemophilus sputorum sp. nov.""International Journal of Medical Microbiology302.2 (2012): 78-83.", -Haemophilus pittmaniae,249188,,,,established,,,"Norskov-Lauritsen, Niels, Brita Bruun, and Mogens Kilian. ""Multilocus sequence phylogenetic study of the genus Haemophilus with description of Haemophilus pittmaniae sp. nov.""International journal of systematic and evolutionary microbiology55.1 (2005): 449-456.", +Haemophilus sputorum,1078480,,,,established,,,"Norskov-Lauritsen, Niels, et al. ""Identification of haemolytic Haemophilus species isolated from human clinical specimens and description of Haemophilus sputorum sp. nov.""ÊInternational Journal of Medical MicrobiologyÊ302.2 (2012): 78-83.", +Haemophilus pittmaniae,249188,,,,established,,,"Norskov-Lauritsen, Niels, Brita Bruun, and Mogens Kilian. ""Multilocus sequence phylogenetic study of the genus Haemophilus with description of Haemophilus pittmaniae sp. nov.""ÊInternational journal of systematic and evolutionary microbiologyÊ55.1 (2005): 449-456.", Elizabethkingia miricola,172045,,,,established,,,"Murray, Patrick, and Juan C. Gea-Banacloche. ""Sepsis caused by Elizabethkingia miricola successfully treated with tigecycline and levofloxacin.""Diagnostic microbiology and infectious disease62.4 (2008): 430-432.", Staphylococcus cornubiensis,1986155,,,,putative,,,"Murray, Aimee K., et al. ""Staphylococcus cornubiensis sp. nov., a member of the Staphylococcus intermedius Group (SIG).""International journal of systematic and evolutionary microbiology68.11 (2018): 3404-3408.", Microvirgula aerodenitrificans,57480,,,,putative,,,"Murphy, Michael E., et al. ""Recurrent Microvirgula aerodenitrificans bacteremia.""Journal of clinical microbiology50.8 (2012): 2823-2825.", @@ -964,13 +964,13 @@ Nocardia niwae,1223489,,,,established,,,"Moser, Benjamin D., et al. ""Nocardia n Alcaligenes denitrificans,nan,,,,established,,,"Morrison Jr, A. J., and K. Boyce 4th. ""Peritonitis caused by Alcaligenes denitrificans subsp. xylosoxydans: case report and review of the literature.""Journal of clinical microbiology24.5 (1986): 879-881.", Legionella gormanii,nan,,,,established,,,"Morris, George K., et al. ""Legionella gormanii sp. nov.""Journal of clinical microbiology12.5 (1980): 718-721.", Achromobacter animicus,1389935,,,,putative,,,"Moremi, Nyambura, et al. ""Multidrug-resistant Achromobacter animicus causing wound infection in a street child in Mwanza, Tanzania.""Diagnostic microbiology and infectious disease88.1 (2017): 58-61.", -Kocuria rosea,1275,,,,established,,,"Moreira, Jorge Salomao, et al. ""Endocarditis by Kocuria rosea in an immunocompetent child.""Brazilian Journal of Infectious Diseases19 (2015): 82-84.", +Kocuria rosea,1275,,,,established,,,"Moreira, Jorge Salomao, et al. ""Endocarditis by Kocuria rosea in an immunocompetent child.""ÊBrazilian Journal of Infectious DiseasesÊ19 (2015): 82-84.", Nocardiopsis dassonvillei,2014,,,,established,,,"Mordarska, Hi, et al. ""Rare, suppurative pulmonary infection caused by Nocardiopsis dassonvillei recognized by glycolipid markers.""FEMS Immunology & Medical Microbiology21.1 (1998): 47-55.", Actinomyces urinae,1689268,,,,putative,,,"Morand, A., et al. ""Actinomyces urinae sp. nov., isolated from 13-year-old girl affected by nephritic syndrome.""New microbes and new infections13 (2016): 1-2.", Elizabethkingia meningoseptica,238,,,,established,,,"Moore, Luke SP, et al. ""Waterborne Elizabethkingia meningoseptica in adult critical care.""Emerging infectious diseases22.1 (2016): 9.", Kocuria rhizophila,72000,,,,established,,,"Moissenet, Didier, et al. ""Persistent bloodstream infection with Kocuria rhizophila related to a damaged central catheter.""Journal of clinical microbiology50.4 (2012): 1495-1498.", Mycobacterium nebraskense,244292,,,,established,,,"Mohamed, Amr M., et al. ""Mycobacterium nebraskense sp. nov., a novel slowly growing scotochromogenic species.""International journal of systematic and evolutionary microbiology54.6 (2004): 2057-2060.", -Ochrobactrum intermedium,28445,,,,established,,,"Moller, Lieke VM, et al. ""Ochrobactrum intermedium infection after liver transplantation.""Journal of clinical microbiology37.1 (1999): 241-244.", +Ochrobactrum intermedium,28445,,,,established,,,"Moller, Lieke VM, et al. ""Ochrobactrum intermedium infection after liver transplantation.""ÊJournal of clinical microbiologyÊ37.1 (1999): 241-244.", Microbacterium paraoxydans,199592,,,,established,,,"Miyamoto, Masahito, et al. ""The first case report of peritoneal dialysis related peritonitis caused by Microbacterium paraoxydans.""Clinical nephrology79.5 (2013): 402-406.", Staphylococcus condimenti,70255,,,,established,,,"Misawa, Y., et al. ""First reported case of Staphylococcus condimenti infection associated with catheter-related bacteraemia.""New microbes and new infections3 (2015): 18-20.", Pasteurella pneumotropica,nan,,,,established,,,"Minton, E. J. ""Pasteurella pneumotropica: meningitis following a dog bite.""Postgraduate medical journal66.772 (1990): 125-126.", @@ -990,15 +990,15 @@ Nocardia neocaledoniensis,236511,,,,putative,,,"McGhie, Travea, et al. ""Nocardi Mobiluncus mulieris,2052,,,,putative,,,"Mayer, Jeanmarie, et al. ""Extragenital infection due to Mobiluncus mulieris: case report and review.""Diagnostic microbiology and infectious disease20.3 (1994): 163-165.", Anaerococcus lactolyticus,33032,,,,putative,,,"Mawer, Damian, et al. ""Anaerococcus lactolyticus causing a mycotic aortic aneurysm: Category: Clinical lesson.""Journal of Infection63.6 (2011): e18.", Globicatella sanguinis,13076,,,,established,,,"Matusnami, Masatoshi, et al. ""Urosepsis caused by Globicatella sanguinis and Corynebacterium riegelii in an adult: case report and literature review.""Journal of Infection and Chemotherapy18.4 (2012): 552-554.", -Bacteroides dorei,291645,,,,putative,,,"Matsuoka, Takayuki, et al. ""First case of an invasive Bacteroides dorei infection detected in a patient with a mycotic aortic aneurysm - raising a rebellion of major indigenous bacteria in humans: a case report and review.""BMC infectious diseases21 (2021): 1-6.", +Bacteroides dorei,291645,,,,putative,,,"Matsuoka, Takayuki, et al. ""First case of an invasive Bacteroides dorei infection detected in a patient with a mycotic aortic aneurysm - raising a rebellion of major indigenous bacteria in humans: a case report and review.""ÊBMC infectious diseasesÊ21 (2021): 1-6.", Nocardia shinanonensis,382504,,,,putative,,,"Matsumoto, Takehisa, et al. ""Nocardia shinanonensis sp. nov., isolated from a patient with endophthalmitis.""International journal of systematic and evolutionary microbiology66.9 (2016): 3324-3328.", Mycobacterium kumamotonense,1780,,,,established,,,"Masaki, Takayuki, et al. ""Mycobacterium kumamotonense sp. nov. recovered from clinical specimen and the first isolation report of Mycobacterium arupense in Japan: novel slowly growing, nonchromogenic clinical isolates related to Mycobacterium terrae complex.""Microbiology and immunology50.11 (2006): 889-897.", Atopobium minutum,1381,,,,putative,,,"Marvaud, Jean-Christophe, Francine Mory, and Thierry Lambert. ""Clostridium clostridioforme and Atopobium minutum clinical isolates with vanB-type resistance in France.""Journal of clinical microbiology49.9 (2011): 3436-3438.", -Streptomyces albus,1888,,,,putative,,,"Martin, Maria Cruz, et al. ""Streptomyces albus isolated from a human actinomycetoma and characterized by molecular techniques.""Journal of clinical microbiology42.12 (2004): 5957-5960.", +Streptomyces albus,1888,,,,putative,,,"Martin, Maria Cruz, et al. ""Streptomyces albus isolated from a human actinomycetoma and characterized by molecular techniques.""ÊJournal of clinical microbiologyÊ42.12 (2004): 5957-5960.", Eubacterium yurii,nan,,,,established,,,"Margaret, Barbara S., and George N. Krywolap. ""Eubacterium yurii subsp. yurii sp. nov. and Eubacterium yurii subsp. margaretiae subsp. nov.: test tube brush bacteria from subgingival dental plaque.""International Journal of Systematic and Evolutionary Microbiology36.2 (1986): 145-149.", Paenibacillus residui,554312,,,,putative,,,"Marchese, A., et al. ""Breast implant infection due to Paenibacillus residui in a cancer patient.""Clinical Microbiology and Infection22.8 (2016): 743-744.", Megasphaera micronuciformis,nan,,,,putative,,,"Marchandin, Helene, et al. ""Phylogenetic analysis of some Sporomusa sub-branch members isolated from human clinical specimens: description of Megasphaera micronuciformis sp. nov.""International journal of systematic and evolutionary microbiology53.2 (2003): 547-553.", -Negativicoccus succinicivorans,620903,,,,established,,,"Marchandin, Helene, et al. ""Negativicoccus succinicivorans gen. nov., sp. nov., isolated from human clinical samples, emended description of the family Veillonellaceae and description of Negativicutes classis nov., Selenomonadales ord. nov. and Acidaminococcaceae fam. nov. in the bacterial phylum Firmicutes.""International journal of systematic and evolutionary microbiology60.6 (2010): 1271-1279.", +Negativicoccus succinicivorans,620903,,,,established,,,"Marchandin, Helene, et al. ""Negativicoccus succinicivorans gen. nov., sp. nov., isolated from human clinical samples, emended description of the family Veillonellaceae and description of Negativicutes classis nov., Selenomonadales ord. nov. and Acidaminococcaceae fam. nov. in the bacterial phylum Firmicutes.""ÊInternational journal of systematic and evolutionary microbiologyÊ60.6 (2010): 1271-1279.", Sphingomonas koreensis,93064,,,,established,,,"Marbjerg, Lis H., Shahin Gaini, and Ulrik S. Justesen. ""First report of Sphingomonas koreensis as a human pathogen in a patient with meningitis.""Journal of clinical microbiology53.3 (2015): 1028-1030.", Scandinavium goeteborgense,1851514,,,,putative,,,"Marathe, Nachiket P., et al. ""Scandinavium goeteborgense gen. nov., sp. nov., a new member of the family Enterobacteriaceae isolated from a wound infection, carries a novel quinolone resistance gene variant.""Frontiers in microbiology10 (2019): 2511.", Actinomyces bovis,1658,,,,putative,,,"Mansouri, Parvin, et al. ""Primary cutaneous actinomycosis caused by Actinomyces bovis in a patient with common variable immunodeficiency.""The Journal of dermatology38.9 (2011): 911-915.", @@ -1009,7 +1009,7 @@ Lactobacillus delbrueckii,1584,commensal,,,established,,,"Maillet, F., et al. "" Streptococcus pluranimalium,1306,,,,established,,,"Maher, Ganesh, et al. ""Streptococcus pluranimalium: emerging animal streptococcal species as causative agent of human brain abscess.""World neurosurgery115 (2018): 208-212.", Staphylococcus delphini,53344,,,,putative,,,"Magleby, Reed, et al. ""First reported human isolation of Staphylococcus delphini.""Diagnostic microbiology and infectious disease94.3 (2019): 274-276.", Bartonella melophagi,1094557,,,,putative,,,"Maggi, Ricardo G., et al. ""Isolation of Candidatus Bartonella melophagi from human blood.""Emerging infectious diseases15.1 (2009): 66.", -Burkholderia vietnamiensis,60552,,,,established,,,"Magalhaes, Marcelo, Murilo CA de Britto, and Peter Vandamme. ""Burkholderia cepacia genomovar III and Burkholderia vietnamiensis double infection in a cystic fibrosis child.""Journal of Cystic Fibrosis1.4 (2002): 292-294.", +Burkholderia vietnamiensis,60552,,,,established,,,"Magalhaes, Marcelo, Murilo CA de Britto, and Peter Vandamme. ""Burkholderia cepacia genomovar III and Burkholderia vietnamiensis double infection in a cystic fibrosis child.""ÊJournal of Cystic FibrosisÊ1.4 (2002): 292-294.", Bacteroides pyogenes,310300,,,,established,,,"Madsen, Ida Ringsborg, and Ulrik Stenz Justesen. ""Bacteremia with Bacteroides pyogenes after a cat bite.""Journal of clinical microbiology49.8 (2011): 3092-3093.", Kocuria kristinae,nan,,,,established,,,"Ma, Edmond SK, et al. ""Kocuria kristinae infection associated with acute cholecystitis.""BMC Infectious Diseases5.1 (2005): 1-3.", Nocardia vinacea,96468,,,,putative,,,"Luong, Minh-Son, et al. ""Pyoderma vegetans in a renal transplant recipient: first case of human infection with Nocardia vinacea.""Transplantation87.12 (2009): 1898-1899.", @@ -1018,27 +1018,27 @@ Clostridium indolis,223919,,,,putative,,,"Lotte, Romain, et al. ""First isolatio Brevibacillus agri,51101,,,,established,,,"Logan, Niall A., et al. ""Polyphasic identification of Bacillus and Brevibacillus strains from clinical, dairy and industrial specimens and proposal of Brevibacillus invocatus sp. nov..""International journal of systematic and evolutionary microbiology52.3 (2002): 953-966.", Brevibacillus centrosporus,54910,,,,established,,,"Logan, Niall A., et al. ""Polyphasic identification of Bacillus and Brevibacillus strains from clinical, dairy and industrial specimens and proposal of Brevibacillus invocatus sp. nov..""International journal of systematic and evolutionary microbiology52.3 (2002): 953-966.", Gemella bergeriae,nan,,,,established,,,"Logan, Latania K., Xiaotian Zheng, and Stanford T. Shulman. ""Gemella bergeriae endocarditis in a boy.""The Pediatric infectious disease journal27.2 (2008): 184-186.", -Staphylococcus pettenkoferi,29387,,,,established,,,"Loiez, Caroline, et al. ""First case of osteomyelitis caused by 'Staphylococcus pettenkoferi'.""Journal of clinical microbiology45.3 (2007): 1069-1071.", +Staphylococcus pettenkoferi,29387,,,,established,,,"Loiez, Caroline, et al. ""First case of osteomyelitis caused by 'Staphylococcus pettenkoferi'.""ÊJournal of clinical microbiologyÊ45.3 (2007): 1069-1071.", Haemophilus massiliensi,nan,,,,putative,,,"Lo, Cheikh Ibrahima, et al. ""High-quality draft genome sequence and description of Haemophilus massiliensis sp. nov.""Standards in genomic sciences11.1 (2016): 1-9.", Legionella parisiensis,45071,,,,putative,,,"Lo Presti, F., et al. ""The first clinical isolate of Legionella parisiensis, from a liver transplant patient with pneumonia.""Journal of Clinical Microbiology35.7 (1997): 1706-1709.", Psychrobacter immobilis,498,,,,established,,,"Lloyd-Puryear, M., et al. ""Meningitis caused by Psychrobacter immobilis in an infant.""Journal of clinical microbiology29.9 (1991): 2041-2042.", Mycoplasma genitalium,nan,,,,established,,,"Lis, Rebecca, Ali Rowhani-Rahbar, and Lisa E. Manhart. ""Mycoplasma genitalium infection and female reproductive tract disease: a meta-analysis.""Clinical Infectious Diseases61.3 (2015): 418-426.", Campylobacter hominis,76517,,,,putative,,,"Linscott, Andrea J., et al. ""Fatal septicemia due to Clostridium hathewayi and Campylobacter hominis.""Anaerobe11.1-2 (2005): 97-98.", -Elizabethkingia bruuniana,1756149,,,,established,,,"Lin, Jiun-Nong, et al. ""Elizabethkingia bruuniana infections in humans, Taiwan, 2005-2017.""Emerging Infectious Diseases25.7 (2019): 1412.", +Elizabethkingia bruuniana,1756149,,,,established,,,"Lin, Jiun-Nong, et al. ""Elizabethkingia bruuniana infections in humans, Taiwan, 2005-2017.""ÊEmerging Infectious DiseasesÊ25.7 (2019): 1412.", Bartonella mayotimonensis,nan,,,,putative,,,"Lin, Eleanor Y., et al. ""Candidatus Bartonella mayotimonensis and endocarditis.""Emerging infectious diseases16.3 (2010): 500.", -Madurella mycetomatis,nan,opportunistic,,,established,,,"Lim, Wilson, et al. ""Madurella mycetomatis, the main causative agent of eumycetoma, is highly susceptible to olorofim.""Journal of Antimicrobial Chemotherapy75.4 (2020): 936-941.", +Madurella mycetomatis,nan,opportunistic,,,established,,,"Lim, Wilson, et al. ""Madurella mycetomatis, the main causative agent of eumycetoma, is highly susceptible to olorofim.""ÊJournal of Antimicrobial ChemotherapyÊ75.4 (2020): 936-941.", Mycoplasma lipofaciens,nan,,,,putative,,,"Lierz, Michael, Andreas Jansen, and Hafez M. Hafez. ""Avian Mycoplasma lipofaciens transmission to veterinarian.""Emerging infectious diseases14.7 (2008): 1161.", Lactococcus garvieae,1363,,,,established,,,"Li, Wei-Kai, et al. ""Lactococcus garvieae endocarditis with initial presentation of acute cerebral infarction in a healthy immunocompetent man.""Internal Medicine47.12 (2008): 1143-1146.", Rickettsia xinyangensis,nan,,,,established,,,"Li, Hao, et al. ""Candidatus Rickettsia xinyangensis as cause of spotted fever group rickettsiosis, Xinyang, China, 2015.""Emerging infectious diseases26.5 (2020): 985.", Leptospira broomii,1049789,,,,putative,,,"Levett, Paul N., et al. ""Leptospira broomii sp. nov., isolated from humans with leptospirosis.""International journal of systematic and evolutionary microbiology56.3 (2006): 671-673.", Streptococcus parasanguinis,1318,,,,established,,,"Lee, Wen-Sen, et al. ""Streptococcus parasanguinis coinfection with Escherichia coli bacteremia in a patient with complicated urinary tract infection.""Journal of Experimental & Clinical Medicine6.6 (2014): 230-231.", Gemella haemolysans,1379,,,,established,,,"Lee, Mi Ra, et al. ""Brain abscess due to Gemella haemolysans.""Journal of clinical microbiology42.5 (2004): 2338-2340.", -Weissella confusa,1583,,,,established,,,"Lee, M-R., et al. ""Bacteraemia caused by Weissella confusa at a university hospital in Taiwan, 1997-2007.""Clinical microbiology and infection17.8 (2011): 1226-1231.", +Weissella confusa,1583,,,,established,,,"Lee, M-R., et al. ""Bacteraemia caused by Weissella confusa at a university hospital in Taiwan, 1997-2007.""ÊClinical microbiology and infectionÊ17.8 (2011): 1226-1231.", Kocuria marina,223184,,,,established,,,"Lee, Ja Young, et al. ""Two cases of peritonitis caused by Kocuria marina in patients undergoing continuous ambulatory peritoneal dialysis.""Journal of clinical microbiology47.10 (2009): 3376-3378.", Mycobacterium paraseoulense,590652,,,,putative,,,"Lee, Hyung Ki, et al. ""Mycobacterium paraseoulense sp. nov., a slowly growing, scotochromogenic species related genetically to Mycobacterium seoulense."" International journal of systematic and evolutionary microbiology 60.2 (2010): 439-443", Mycobacterium alvei,67081,,,,established,,,"Lee, Chen-Hsiang, et al. ""Prosthetic joint infection caused by Mycobacterium alvei in an elderly patient.""Journal of clinical microbiology49.8 (2011): 3096-3098.", Dokdonella koreensis,1300342,,,,putative,,,"Lee, Boeun, and Mitchell R. Weinstein. ""Dokdonella koreensis bacteremia: a case report and review of the literature.""Canadian Journal of Infectious Diseases and Medical Microbiology25.5 (2014): 255-256.", -Paenibacillus cineris,237530,,,,putative,,,"Leao, Robson Souza, et al. ""First report of Paenibacillus cineris from a patient with cystic fibrosis.""Diagnostic microbiology and infectious disease66.1 (2010): 101-103.", +Paenibacillus cineris,237530,,,,putative,,,"Leao, Robson Souza, et al. ""First report of Paenibacillus cineris from a patient with cystic fibrosis.""ÊDiagnostic microbiology and infectious diseaseÊ66.1 (2010): 101-103.", Haemophilus paraphrohaemolyticus,736,,,,established,,,"Le Floch, Anne-Sophie, et al. ""Haemophilus parahaemolyticus septic shock after aspiration pneumonia, France.""Emerging infectious diseases19.10 (2013): 1694.", Parapseudoflavitalea muciniphila,nan,,,,putative,,,"Lawson, Paul A., et al. ""Parapseudoflavitalea muciniphila gen. nov., sp. nov., a member of the family Chitinophagaceae isolated from a human peritoneal tumour and reclassification of Pseudobacter ginsenosidimutans as Pseudoflavitalea ginsenosidimutans comb. nov."" International Journal of Systematic and Evolutionary Microbiology 70.6 (2020): 3639-3646.", Facklamia languida,883113,,,,established,,,"Lawson, Paul A., et al. ""Facklamia languida sp. nov., isolated from human clinical specimens.""Journal of clinical microbiology37.4 (1999): 1161-1164.", @@ -1057,12 +1057,12 @@ Mannheimia glucosida,nan,,,,putative,,,"Lau, Jillian SY, et al. ""Human wound in Nocardia vulneris,1141657,,,,established,,,"Lasker, Brent A., et al. ""Nocardia vulneris sp. nov., isolated from wounds of human patients in North America.""Antonie van Leeuwenhoek106.3 (2014): 543-553.", Nocardia arizonensis,1141647,,,,established,,,"Lasker, Brent A., et al. ""Nocardia arizonensis sp. nov., obtained from human respiratory specimens.""Antonie van Leeuwenhoek108.5 (2015): 1129-1137.", Aquimonas voraii,265719,,,,putative,,,"LaSala, P. Rocco, et al. ""First reported infections caused by three newly described genera in the family Xanthomonadaceae.""Journal of clinical microbiology45.2 (2007): 641-644.", -Cupriavidus metallidurans,119219,,,,putative,,,"Langevin, Stephanie, et al. ""First case of invasive human infection caused by Cupriavidus metallidurans.""Journal of clinical microbiology49.2 (2011): 744-745.", +Cupriavidus metallidurans,119219,,,,putative,,,"Langevin, Stephanie, et al. ""First case of invasive human infection caused by Cupriavidus metallidurans.""ÊJournal of clinical microbiologyÊ49.2 (2011): 744-745.", Desulfomicrobium orale,888061,primary,,oral,putative,,,"Langendijk, P. S., et al. ""Isolation of Desulfomicrobium orale sp. nov. and Desulfovibrio strain NY682, oral sulfate-reducing bacteria involved in human periodontal disease.""International Journal of Systematic and Evolutionary Microbiology51.3 (2001): 1035-1044.", Mycobacterium setense,431269,,,,established,,,"Lamy, Brigitte, et al. ""Mycobacterium setense sp. nov., a Mycobacterium fortuitum-group organism isolated from a patient with soft tissue infection and osteitis.""International Journal of Systematic and Evolutionary Microbiology58.2 (2008): 486-490.", Massilia timonae,47229,,,,established,,,"La Scola, Bernard, et al. ""Massilia timonae gen. nov., sp. nov., isolated from blood of an immunocompromised patient with cerebellar lesions.""Journal of clinical microbiology36.10 (1998): 2847-2852.", -Campylobacter lanienae,75658,,,,putative,,,"Levesque, Simon, et al. ""First reported case of Campylobacter lanienae enteritis in a human.""JMM Case Reports3.3 (2016).", -Dolosigranulum pigrum,29394,,,,established,,,"Lecuyer, Herve, et al. ""Dolosigranulum pigrum causing nosocomial pneumonia and septicemia.""Journal of clinical microbiology45.10 (2007): 3474-3475.", +Campylobacter lanienae,75658,,,,putative,,,"Levesque, Simon, et al. ""First reported case of Campylobacter lanienae enteritis in a human.""ÊJMM Case ReportsÊ3.3 (2016).", +Dolosigranulum pigrum,29394,,,,established,,,"Lecuyer, Herve, et al. ""Dolosigranulum pigrum causing nosocomial pneumonia and septicemia.""ÊJournal of clinical microbiologyÊ45.10 (2007): 3474-3475.", Campylobacter volucris,1031542,,,,putative,,,"Kweon, Oh Joo, et al. ""First case report of Campylobacter volucris bacteremia in an immunocompromised patient.""Journal of clinical microbiology53.6 (2015): 1976-1978.", Staphylococcus schleiferi,1295,,,,established,,,"Kumar, D., et al. ""Case of Staphylococcus schleiferi subspecies coagulans endocarditis and metastatic infection in an immune compromised host.""Transplant Infectious Disease9.4 (2007): 336-338.", Rhizobium pusense,1166683,,,,putative,,,"Kuchibiro, Tomokazu, et al. ""First case report of sepsis caused by Rhizobium pusense in Japan.""JMM case reports5.1 (2018).", @@ -1073,12 +1073,12 @@ Francisella philomiragia,28110,,,,established,,,"Kreitmann, Louis, et al. ""Diss Borrelia miyamotoi,47466,,,,established,,,"Krause, Peter J., et al. ""Human Borrelia miyamotoi infection in the United States.""The New England journal of medicine368.3 (2013): 291.", Bartonella tamiae,1094559,,,,established,,,"Kosoy, Michael, et al. ""Bartonella tamiae sp. nov., a newly recognized pathogen isolated from three human patients from Thailand.""Journal of clinical microbiology46.2 (2008): 772-775.", Eggerthia catenaformis,31973,,,,established,,,"Kordjian, Hayarpi H., et al. ""First clinical description of Eggerthia catenaformis bacteremia in a patient with dental abscess.""Anaerobe35 (2015): 38-40.", -Frederiksenia canicola,123824,,,,established,,,"Korczak, Bozena M., et al. ""Frederiksenia canicola gen. nov., sp. nov. isolated from dogs and human dog-bite wounds.""Antonie van Leeuwenhoek105 (2014): 731-741.", +Frederiksenia canicola,123824,,,,established,,,"Korczak, Bozena M., et al. ""Frederiksenia canicola gen. nov., sp. nov. isolated from dogs and human dog-bite wounds.""ÊAntonie van LeeuwenhoekÊ105 (2014): 731-741.", Mycobacterium tokaiense,39695,,,,established,,,"Kondo, Akihide, et al. ""Caseous Necrotic Granuloma in the Pituitary Stalk Due to Nontuberculous Mycobacteria (Mycobacterium Tokaiense) Infection.""Neurologia medico-chirurgica46.2 (2006): 80-83.", Sphingobacterium spiritivorum,258,,,,established,,,"Koh, Young Rae, et al. ""The first Korean case of Sphingobacterium spiritivorum bacteremia in a patient with acute myeloid leukemia.""Annals of laboratory medicine33.4 (2013): 283-287.", Streptococcus iniae,1346,,,,established,,,"Koh, Tse Hsien, Asok Kurup, and John Chen. ""Streptococcus iniae discitis in Singapore.""Emerging infectious diseases10.9 (2004): 1694.", Streptomyces lanatus,66900,,,,putative,,,"Kofteridis, Diamantis P., et al. ""Streptomyces pneumonia in an immunocompetent patient: a case report and literature review.""Diagnostic microbiology and infectious disease59.4 (2007): 459-462.", -Tepidimonas arfidensis,nan,,,,putative,,,"Ko, Kwan Soo, et al. ""Tepidimonas arfidensis Sp. Nov., a Novel Gram_Negative and Thermophilic Bacterium Isolated from the Bone Marrow of a Patient with Leukemia in Korea.""Microbiology and immunology49.8 (2005): 785-788.", +Tepidimonas arfidensis,nan,,,,putative,,,"Ko, Kwan Soo, et al. ""Tepidimonas arfidensis Sp. Nov., a Novel Gram_Negative and Thermophilic Bacterium Isolated from the Bone Marrow of a Patient with Leukemia in Korea.""ÊMicrobiology and immunologyÊ49.8 (2005): 785-788.", Paenibacillus konsidensis,2834413,,,,putative,,,"Ko, Kwan Soo, et al. ""Paenibacillus konsidensis sp. nov., isolated from a patient.""International journal of systematic and evolutionary microbiology58.9 (2008): 2164-2168.", Bordetella ansorpii,288768,,,,putative,,,"Ko, Kwan Soo, et al. ""New species of Bordetella, Bordetella ansorpii sp. nov., isolated from the purulent exudate of an epidermal cyst.""Journal of clinical microbiology43.5 (2005): 2516-2519.", Bacillus idriensis,1926278,,,,putative,,,"Ko, Kwan Soo, et al. ""Bacillus infantis sp. nov. and Bacillus idriensis sp. nov., isolated from a patient with neonatal sepsis.""International journal of systematic and evolutionary microbiology56.11 (2006): 2541-2544.", @@ -1090,7 +1090,7 @@ Acinetobacter seifertii,1530123,,,,established,,,"Kishii, Kozue, et al. ""The fi Alcaligenes piechaudii,nan,,,,established,,,"Kiredjian, M., et al. ""Alcaligenes piechaudii, a new species from human clinical specimens and the environment.""International Journal of Systematic and Evolutionary Microbiology36.2 (1986): 282-287.", Dyella japonica,1380365,,,,putative,,,"Kiratisin, Pattarachai, et al. ""Dyella japonica bacteremia in hemodialysis patient.""Emerging infectious diseases13.8 (2007): 1266.", Roseomonas mucosa,207340,,,,established,,,"Kim, Yu Kyung, et al. ""Two cases of bacteremia due to Roseomonas mucosa.""Annals of laboratory medicine36.4 (2016): 367-370.", -Rickettsia monacensis,109232,,,,established,,,"Kim, Yeon_Sook, et al. ""First isolation of Rickettsia monacensis from a patient in South Korea.""Microbiology and immunology61.7 (2017): 258-263.", +Rickettsia monacensis,109232,,,,established,,,"Kim, Yeon_Sook, et al. ""First isolation of Rickettsia monacensis from a patient in South Korea.""ÊMicrobiology and immunologyÊ61.7 (2017): 258-263.", Paenibacillus sputi,58172,,,,putative,,,"Kim, Kwang Kyu, et al. ""Paenibacillus sputi sp. nov., isolated from the sputum of a patient with pulmonary disease.""International journal of systematic and evolutionary microbiology60.10 (2010): 2371-2377", Halomonas hamiltonii,502829,,,,established,,,"Kim, Kwang Kyu, et al. ""Halomonas stevensii sp. nov., Halomonas hamiltonii sp. nov. and Halomonas johnsoniae sp. nov., isolated from a renal care centre.""International journal of systematic and evolutionary microbiology60.2 (2010): 369-377.", Halomonas stevensii,1177117,,,,putative,,,"Kim, Kwang Kyu, et al. ""Halomonas stevensii sp. nov., Halomonas hamiltonii sp. nov. and Halomonas johnsoniae sp. nov., isolated from a renal care centre.""International journal of systematic and evolutionary microbiology60.2 (2010): 369-377.", @@ -1128,17 +1128,17 @@ Gordonia araii,1073574,,,,established,,,"Kageyama, Akiko, et al. ""Gordonia arai Gordonia effusa,1077974,,,,putative,,,"Kageyama, Akiko, et al. ""Gordonia araii sp. nov. and Gordonia effusa sp. nov., isolated from patients in Japan.""International journal of systematic and evolutionary microbiology56.8 (2006): 1817-1821.", Bacteroides faecis,674529,,,,putative,,,"Kaeuffer, Charlotte, et al. ""First Case of Bacteraemia Due to Carbapenem-Resistant Bacteroides faecis.""Antibiotics10.3 (2021): 319.", Rothia mucilaginosa,nan,,,,established,,,"Kaasch, A. J., G. Saxler, and H. Seifert. ""Septic arthritis due to Rothia mucilaginosa.""Infection39.1 (2011): 81-82.", -Luteibacter anthropi,564369,,,,putative,,,"Kampfer, Peter, Nicole Lodders, and Enevold Falsen. ""Luteibacter anthropi sp. nov., isolated from human blood, and reclassification of Dyella yeojuensis Kim et al. 2006 as Luteibacter yeojuensis comb. nov.""International journal of systematic and evolutionary microbiology59.11 (2009): 2884-2887.", -Ochrobactrum haematophilum,nan,,,,putative,,,"Kampfer, Peter, et al. ""Ochrobactrum haematophilum sp. nov. and Ochrobactrum pseudogrignonense sp. nov., isolated from human clinical specimens.""International journal of systematic and evolutionary microbiology57.11 (2007): 2513-2518.", -Ochrobactrum pseudogrignonense,nan,,,,putative,,,"Kampfer, Peter, et al. ""Ochrobactrum haematophilum sp. nov. and Ochrobactrum pseudogrignonense sp. nov., isolated from human clinical specimens.""International journal of systematic and evolutionary microbiology57.11 (2007): 2513-2518.", -Massilia oculi,945844,,,,putative,,,"Kampfer, Peter, et al. ""Massilia oculi sp. nov., isolated from a human clinical specimen.""International journal of systematic and evolutionary", -Chryseobacterium anthropi,395933,,,,established,,,"Kaampfer, Peter, et al. ""Description of Chryseobacterium anthropi sp. nov. to accommodate clinical isolates biochemically similar to Kaistella koreensis and Chryseobacterium haifense, proposal to reclassify Kaistella koreensis as Chryseobacterium koreense comb. nov. and emended description of the genus Chryseobacterium.""International journal of systematic and evolutionary microbiology59.10 (2009): 2421-2428.", -Paenalcaligenes hominis,643674,,,,putative,,,"Kampfer, P., et al. ""Paenalcaligenes hominis gen. nov., sp. nov., a new member of the family Alcaligenaceae.""International journal of systematic and evolutionary microbiology60.7 (2010): 1537-1542.", -Dietzia aurantiaca,983873,,,,putative,,,"Kampfer, P., et al. ""Dietzia aurantiaca sp. nov., isolated from a human clinical specimen.""International Journal of Systematic and Evolutionary Microbiology62.Pt_3 (2012): 484-488.", -Legionella waltersii,66969,,,,putative,,,"Konig, Corinne, et al. ""Legionella waltersii a novel cause of pneumonia?.""Acta Paediatrica94.10 (2005): 1505-1507.", +Luteibacter anthropi,564369,,,,putative,,,"Kampfer, Peter, Nicole Lodders, and Enevold Falsen. ""Luteibacter anthropi sp. nov., isolated from human blood, and reclassification of Dyella yeojuensis Kim et al. 2006 as Luteibacter yeojuensis comb. nov.""ÊInternational journal of systematic and evolutionary microbiologyÊ59.11 (2009): 2884-2887.", +Ochrobactrum haematophilum,nan,,,,putative,,,"Kampfer, Peter, et al. ""Ochrobactrum haematophilum sp. nov. and Ochrobactrum pseudogrignonense sp. nov., isolated from human clinical specimens.""ÊInternational journal of systematic and evolutionary microbiologyÊ57.11 (2007): 2513-2518.", +Ochrobactrum pseudogrignonense,nan,,,,putative,,,"Kampfer, Peter, et al. ""Ochrobactrum haematophilum sp. nov. and Ochrobactrum pseudogrignonense sp. nov., isolated from human clinical specimens.""ÊInternational journal of systematic and evolutionary microbiologyÊ57.11 (2007): 2513-2518.", +Massilia oculi,945844,,,,putative,,,"Kampfer, Peter, et al. ""Massilia oculi sp. nov., isolated from a human clinical specimen.""ÊInternational journal of systematic and evolutionaryÊ", +Chryseobacterium anthropi,395933,,,,established,,,"Kaampfer, Peter, et al. ""Description of Chryseobacterium anthropi sp. nov. to accommodate clinical isolates biochemically similar to Kaistella koreensis and Chryseobacterium haifense, proposal to reclassify Kaistella koreensis as Chryseobacterium koreense comb. nov. and emended description of the genus Chryseobacterium.""ÊInternational journal of systematic and evolutionary microbiologyÊ59.10 (2009): 2421-2428.", +Paenalcaligenes hominis,643674,,,,putative,,,"Kampfer, P., et al. ""Paenalcaligenes hominis gen. nov., sp. nov., a new member of the family Alcaligenaceae.""ÊInternational journal of systematic and evolutionary microbiologyÊ60.7 (2010): 1537-1542.", +Dietzia aurantiaca,983873,,,,putative,,,"Kampfer, P., et al. ""Dietzia aurantiaca sp. nov., isolated from a human clinical specimen.""ÊInternational Journal of Systematic and Evolutionary MicrobiologyÊ62.Pt_3 (2012): 484-488.", +Legionella waltersii,66969,,,,putative,,,"Konig, Corinne, et al. ""Legionella waltersii a novel cause of pneumonia?.""ÊActa PaediatricaÊ94.10 (2005): 1505-1507.", Asaia lannensis,1307926,,,,established,,,"Juretschko, Stefan, Toni K. Beavers-May, and Stephanie H. Stovall. ""Nosocomial infection with Asaia lannensis in two paediatric patients with idiopathic dilated cardiomyopathy.""Journal of medical microbiology59.7 (2010): 848-852.", Veillonella montpellierensis,187328,commensal,,"oral, gut, vaginal",established,,,"Jumas-Bilak, Estelle, et al. ""Veillonella montpellierensis sp. nov., a novel, anaerobic, Gram-negative coccus isolated from human clinical samples.""International journal of systematic and evolutionary microbiology54.4 (2004): 1311-1316.", -Jonquetella anthropi,428712,,,,putative,,,"Jumas-Bilak, Estelle, et al. ""Jonquetella anthropi gen. nov., sp. nov., the first member of the candidate phylum Synergistetes isolated from man.""International journal of systematic and evolutionary microbiology57.12 (2007): 2743-2748.", +Jonquetella anthropi,428712,,,,putative,,,"Jumas-Bilak, Estelle, et al. ""Jonquetella anthropi gen. nov., sp. nov., the first member of the candidate phylum Synergistetes isolated from man.""ÊInternational journal of systematic and evolutionary microbiologyÊ57.12 (2007): 2743-2748.", Dialister micraerophilus,309120,,,,established,,,"Jumas-Bilak, Estelle, et al. ""Dialister micraerophilus sp. nov. and Dialister propionicifaciens sp. nov., isolated from human clinical samples.""International journal of systematic and evolutionary microbiology55.6 (2005): 2471-2478.", Dialister propionicifaciens,nan,,,,established,,,"Jumas-Bilak, Estelle, et al. ""Dialister micraerophilus sp. nov. and Dialister propionicifaciens sp. nov., isolated from human clinical samples.""International journal of systematic and evolutionary microbiology55.6 (2005): 2471-2478.", Aeromonas jandaei,650,,,,established,,,"Joseph, S. W., et al. ""Aeromonas jandaei and Aeromonas veronii dual infection of a human wound following aquatic exposure.""Journal of Clinical Microbiology29.3 (1991): 565-569.", @@ -1147,8 +1147,8 @@ Nocardia kroppenstedtii,nan,,,,established,,,"Jones, Amanda, et al. ""Nocardia k Rhodococcus gordoniae,223392,,,,putative,,,"Jones, Amanda L., et al. ""Rhodococcus gordoniae sp. nov., an actinomycete isolated from clinical material and phenol-contaminated soil.""International journal of systematic and evolutionary microbiology54.2 (2004): 407-411.", Dietzia papillomatosis,1349764,,,,established,,,"Jones, Amanda L., et al. ""Dietzia papillomatosis sp. nov., a novel actinomycete isolated from the skin of an immunocompetent patient with confluent and reticulated papillomatosis.""International Journal of Systematic and Evolutionary Microbiology58.1 (2008): 68-72.", Providencia heimbachae,333962,,,,putative,,,"Jneid, Joanne, et al. ""Draft genome sequence of Providencia heimbachae, isolated from a diabetic foot ulcer.""Genome announcements4.2 (2016): e00276-16.", -Mycobacterium canariasense,228230,,,,established,,,"Jimenez, M. Soledad, et al. ""Mycobacterium canariasense sp. nov.""International journal of systematic and evolutionary microbiology54.5 (2004): 1729-1734.", -Vibrio metschnikovii,28172,,,,established,,,"Jean-Jacques, W., et al. ""Vibrio metschnikovii bacteremia in a patient with cholecystitis.""Journal of clinical microbiology14.6 (1981): 711-712.", +Mycobacterium canariasense,228230,,,,established,,,"Jimenez, M. Soledad, et al. ""Mycobacterium canariasense sp. nov.""ÊInternational journal of systematic and evolutionary microbiologyÊ54.5 (2004): 1729-1734.", +Vibrio metschnikovii,28172,,,,established,,,"Jean-Jacques, W., et al. ""Vibrio metschnikovii bacteremia in a patient with cholecystitis.""ÊJournal of clinical microbiologyÊ14.6 (1981): 711-712.", Nocardia mikamii,1223548,,,,putative,,,"Jannat-Khah, Deanna, et al. ""Nocardia mikamii sp. nov., isolated from human pulmonary infections in the USA.""International journal of systematic and evolutionary microbiology60.10 (2010): 2272-2276.", Empedobacter brevis,247,,,,established,,,"Janknecht, P., C. Schneider, and T. Ness. ""Outbreak of Empedobacter brevis endophthalmitis after cataract extraction.""Graefe's archive for clinical and experimental ophthalmology240.4 (2002): 291-295.", Borrelia lonestari,nan,,,,established,,,"James, Angela M., et al. ""Borrelia lonestari infection after a bite by an Amblyomma americanum tick.""The Journal of infectious diseases183.12 (2001): 1810-1814.", @@ -1164,7 +1164,7 @@ Rickettsia tamurae,334545,,,,putative,,,"Imaoka, Kaoru, et al. ""The first human Actinotignum schaalii,59505,,,,established,,,"Ikeda, M., et al. ""Propionimicrobium lymphophilum and Actinotignum schaalii bacteraemia: a case report.""New microbes and new infections18 (2017): 18-21.", Nocardia exalbida,1206729,,,,established,,,"Iida, Soji, et al. ""Nocardia exalbida sp. nov., isolated from Japanese patients with nocardiosis.""International journal of systematic and evolutionary microbiology56.6 (2006): 1193-1196.", Gordonia otitidis,249058,,,,established,,,"Iida, Soji, et al. ""Gordonia otitidis sp. nov., isolated from a patient with external otitis.""International journal of systematic and evolutionary microbiology55.5 (2005): 1871-1876.", -Rhizopus oryzae,nan,opportunistic,,,established,,,"Ribes, Julie A., Carolyn L. Vanover-Sams, and Doris J. Baker. ""Zygomycetes in human disease.""Clinical microbiology reviews13.2 (2000): 236-301.", +Rhizopus oryzae,nan,opportunistic,,,established,,,"Ribes, Julie A., Carolyn L. Vanover-Sams, and Doris J. Baker. ""Zygomycetes in human disease.""ÊClinical microbiology reviewsÊ13.2 (2000): 236-301.", Sphingobacterium cellulitidis,1768011,,,,putative,,,"Huys, Geert, et al. ""Sphingobacterium cellulitidis sp. nov., isolated from clinical and environmental sources.""International journal of systematic and evolutionary microbiology67.5 (2017): 1415-1421.", Escherichia albertii,208962,primary,,,established,,,"Huys, Geert, et al. ""Escherichia albertii sp. nov., a diarrhoeagenic species isolated from stool specimens of Bangladeshi children.""International journal of systematic and evolutionary microbiology53.3 (2003): 807-810.", Alloscardovia omnicolens,419015,,,,established,,,"Huys, Geert, et al. ""Alloscardovia omnicolens gen. nov., sp. nov., from human clinical samples.""International journal of systematic and evolutionary microbiology57.7 (2007): 1442-1446.", @@ -1183,8 +1183,8 @@ Methylobacterium zatmanii,2738439,,,,established,,,"Hornei, B., et al. ""Systemi Mycobacterium longobardum,1785,,,,established,,,"Hong, Sung Kuk, et al. ""First case of Mycobacterium longobardum infection.""Annals of laboratory medicine33.5 (2013): 356-359.", Ochrobactrum tritici,nan,,,,putative,,,"Hong, Duck Jin, et al. ""First case report of human infection with Ochrobactrum tritici causing bacteremia and cholecystitis.""Annals of laboratory medicine36.3 (2016): 278-280.", Weeksella zoohelcum,nan,,,,established,,,"Holmes, B., et al. ""Weeksella zoohelcum sp. nov.(formerly group IIj), from human clinical specimens.""Systematic and Applied Microbiology8.3 (1986): 191-196.", -Chryseobacterium bernardetii,1241978,,,,established,,,"Holmes, B., A. G. Steigerwalt, and A. C. Nicholson. ""DNA-DNA hybridization study of strains of Chryseobacterium, Elizabethkingia and Empedobacter and of other usually indole-producing non-fermenters of CDC groups IIc, IIe, IIh and IIi, mostly from human clinical sources, and proposals of Chryseobacterium bernardetii sp. nov., Chryseobacterium carnis sp. nov., Chryseobacterium lactis sp. nov., Chryseobacterium nakagawai sp. nov. and Chryseobacterium taklimakanense comb. nov.""International journal of systematic and evolutionary microbiology63.0 12 (2013): 4639.", -Chryseobacterium nakagawai,1241982,,,,putative,,,"Holmes, B., A. G. Steigerwalt, and A. C. Nicholson. ""DNA-DNA hybridization study of strains of Chryseobacterium, Elizabethkingia and Empedobacter and of other usually indole-producing non-fermenters of CDC groups IIc, IIe, IIh and IIi, mostly from human clinical sources, and proposals of Chryseobacterium bernardetii sp. nov., Chryseobacterium carnis sp. nov., Chryseobacterium lactis sp. nov., Chryseobacterium nakagawai sp. nov. and Chryseobacterium taklimakanense comb. nov.""International journal of systematic and evolutionary microbiology63.0 12 (2013): 4639.", +Chryseobacterium bernardetii,1241978,,,,established,,,"Holmes, B., A. G. Steigerwalt, and A. C. Nicholson. ""DNA-DNA hybridization study of strains of Chryseobacterium, Elizabethkingia and Empedobacter and of other usually indole-producing non-fermenters of CDC groups IIc, IIe, IIh and IIi, mostly from human clinical sources, and proposals of Chryseobacterium bernardetii sp. nov., Chryseobacterium carnis sp. nov., Chryseobacterium lactis sp. nov., Chryseobacterium nakagawai sp. nov. and Chryseobacterium taklimakanense comb. nov.""ÊInternational journal of systematic and evolutionary microbiologyÊ63.0 12 (2013): 4639.", +Chryseobacterium nakagawai,1241982,,,,putative,,,"Holmes, B., A. G. Steigerwalt, and A. C. Nicholson. ""DNA-DNA hybridization study of strains of Chryseobacterium, Elizabethkingia and Empedobacter and of other usually indole-producing non-fermenters of CDC groups IIc, IIe, IIh and IIi, mostly from human clinical sources, and proposals of Chryseobacterium bernardetii sp. nov., Chryseobacterium carnis sp. nov., Chryseobacterium lactis sp. nov., Chryseobacterium nakagawai sp. nov. and Chryseobacterium taklimakanense comb. nov.""ÊInternational journal of systematic and evolutionary microbiologyÊ63.0 12 (2013): 4639.", Dysgonomonas gadei,156974,,,,putative,,,"Hofstad, Tor, et al. ""Dysgonomonas gen. nov. to accommodate Dysgonomonas gadei sp. nov., an organism isolated from a human gall bladder, and Dysgonomonas capnocytophagoides (formerly CDC group DF-3).""International Journal of Systematic and Evolutionary Microbiology50.6 (2000): 2189-2195.", Enterobacter kobei,208224,,,,putative,,,"Hoffmann, Harald, et al. ""Nosocomial urosepsis caused by Enterobacter kobei with aberrant phenotype.""Diagnostic microbiology and infectious disease53.2 (2005): 143-147.", Enterobacter ludwigii,299767,,,,established,,,"Hoffmann, Harald, et al. ""Description of Enterobacter ludwigii sp. nov., a novel Enterobacter species of clinical relevance.""Systematic and applied microbiology28.3 (2005): 206-212.", @@ -1199,13 +1199,13 @@ Burkholderia stabilis,95485,,,,established,,,"Heo, S. T., et al. ""Hospital outb Actinomyces johnsonii,544581,,,,putative,,,"Henssge, Uta, et al. ""Emended description of Actinomyces naeslundii and descriptions of Actinomyces oris sp. nov. and Actinomyces johnsonii sp. nov., previously identified as Actinomyces naeslundii genospecies 1, 2 and WVA 963.""International journal of systematic and evolutionary microbiology59.Pt 3 (2009): 509.", Actinomyces oris,544580,,,,established,,,"Henssge, Uta, et al. ""Emended description of Actinomyces naeslundii and descriptions of Actinomyces oris sp. nov. and Actinomyces johnsonii sp. nov., previously identified as Actinomyces naeslundii genospecies 1, 2 and WVA 963.""International journal of systematic and evolutionary microbiology59.Pt 3 (2009): 509.", Alloiococcus otitis,1652,,,,established,,,"Hendolin, Panu H., et al. ""High incidence of Alloiococcus otitis in otitis media with effusion.""The Pediatric infectious disease journal18.10 (1999): 860-865.", -Haematobacter missouriensis,366616,,,,putative,,,"Helsel, Leta O., et al. ""Identification of 'Haematobacter,' a new genus of aerobic Gram-negative rods isolated from clinical specimens, and reclassification of Rhodobacter massiliensis as Haematobacter massiliensis comb. nov..""Journal of clinical microbiology45.4 (2007): 1238-1243.", +Haematobacter missouriensis,366616,,,,putative,,,"Helsel, Leta O., et al. ""Identification of 'Haematobacter,' a new genus of aerobic Gram-negative rods isolated from clinical specimens, and reclassification of Rhodobacter massiliensis as ÒHaematobacter massiliensis comb. nov.Ó.""ÊJournal of clinical microbiologyÊ45.4 (2007): 1238-1243.", Lachnoanaerobaculum umeaense,617123,,,,putative,,,"Hedberg, Maria E., et al. ""Lachnoanaerobaculum gen. nov., a new genus in the Lachnospiraceae: characterization of Lachnoanaerobaculum umeaense gen. nov., sp. nov., isolated from the human small intestine, and Lachnoanaerobaculum orale sp. nov., isolated from saliva, and reclassification of Eubacterium saburreum (Prevot 1966) Holdeman and Moore 1970 as Lachnoanaerobaculum saburreum comb. nov.""International journal of systematic and evolutionary microbiology62.Pt 11 (2012): 2685.", Facklamia hominis,178214,,,,established,,,"Healy, B., et al. ""Facklamia hominis causing chorioamnionitis and puerperal bacteraemia.""Journal of Infection50.4 (2005): 353-355.", Rhodococcus equi,nan,,,,established,,,"Harvey, Roger L., and James C. Sunstrum. ""Rhodococcus equi Infection in Patients with and without Human Immunodificiency Virus Infection.""Reviews of infectious diseases13.1 (1991): 139-145.", Chlamydia felis,264202,,,,putative,,,"Hartley, J. C., et al. ""Conjunctivitis due to Chlamydophila felis (Chlamydia psittaci feline pneumonitis agent) acquired from a cat: case report with molecular characterization of isolates from the patient and cat.""Journal of Infection43.1 (2001): 7-11.", Odoribacter splanchnicus,28118,,,,established,,,"Hardham, John M., et al. ""Transfer of Bacteroides splanchnicus to Odoribacter gen. nov. as Odoribacter splanchnicus comb. nov., and description of Odoribacter denticanis sp. nov., isolated from the crevicular spaces of canine periodontitis patients.""International journal of systematic and evolutionary microbiology58.1 (2008): 103-109.", -Dysgonomonas capnocytophagoides,45254,,,,established,,,"Hansen, Per S., Thoger G. Jensen, and Gahrn-Hansen, Bente ""Dysgonomonas capnocytophagoides bacteraemia in a neutropenic patient treated for acute myeloid leukaemia: Case report.""Apmis113.3 (2005): 229-231.", +Dysgonomonas capnocytophagoides,45254,,,,established,,,"Hansen, Per S., Thoger G. Jensen, and Gahrn-Hansen, Bente ""Dysgonomonas capnocytophagoides bacteraemia in a neutropenic patient treated for acute myeloid leukaemia: Case report.""ÊApmisÊ113.3 (2005): 229-231.", Leptotrichia sanguinegens,104608,,,,putative,,,"Hanff, Philip A., et al. ""Leptotrichia sanguinegens sp. nov., a new agent of postpartum and neonatal bacteremia.""Clinical infectious diseases(1995): S237-S239.", Actinomadura chibensis,392828,,,,putative,,,"Hanafy, Ahmed, et al. ""Majority of Actinomadura clinical isolates from sputa or bronchoalveolar lavage fluid in Japan belongs to the cluster of Actinomadura cremea and Actinomadura nitritigenes, and the description of Actinomadura chibensis sp. nov.""Mycopathologia162.4 (2006): 281-287.", Neisseria bacilliformis,267212,,,,established,,,"Han, Xiang Y., Tao Hong, and Enevold Falsen. ""Neisseria bacilliformis sp. nov. isolated from human infections.""Journal of clinical microbiology44.2 (2006): 474-479.", @@ -1222,20 +1222,20 @@ Actinobaculum urinale,nan,,,,established,,,"Hall, Val, et al. ""Actinobaculum ur Bordetella trematum,123899,,,,established,,,"Halim, Ilham, et al. ""Isolation of Bordetella trematum from bacteremia.""Annales de biologie clinique. Vol. 72. No. 5. 2014.", Desulfovibrio desulfuricans,876,opportunistic,"abscess, blood",gut,established,,,"Hagiya, Hideharu, et al. ""Desulfovibrio desulfuricans bacteremia: a case report and literature review.""Anaerobe49 (2018): 112-115.", Mycobacterium heidelbergense,53376,,,,established,,,"Haas, Walter H., et al. ""A new agent of mycobacterial lymphadenitis in children: Mycobacterium heidelbergense sp. nov.""Journal of Clinical Microbiology35.12 (1997): 3203-3209.", -Streptococcus cristatus,45634,,,,established,,,"Guzman, Camilo, Adi Zaclli, and John Molinari. ""Streptococcus cristatus-an oral bacterium causing a case of mild bacteremia and possible endocarditis."" (2021).", +Streptococcus cristatus,45634,,,,established,,,"Guzman, Camilo, Adi Zaclli, and John Molinari. ""Streptococcus cristatus-an oral bacterium causing a case of mild bacteremia and Òpossible endocarditisÓ."" (2021).", Capnocytophaga haemolytica,45243,,,,established,,,"Gutierrez-Martin, Maria A., et al. ""Aortic valve endocarditis by Capnocytophaga haemolytica.""The Annals of thoracic surgery84.3 (2007): 1008-1010.", Mycobacterium intracellulare,1767,,,,established,,,"Guthertz, Linda S., et al. ""Mycobacterium avium and Mycobacterium intracellulare infections in patients with and without AIDS.""Journal of Infectious Diseases160.6 (1989): 1037-1041.", -Bacillus cytotoxicus,580165,,,,established,,,"Guinebretiere, Marie-Helene, et al. ""Bacillus cytotoxicus sp. nov. is a novel thermotolerant species of the Bacillus cereus group occasionally associated with food poisoning.""International journal of systematic and evolutionary microbiology63.Pt_1 (2013): 31-40.", +Bacillus cytotoxicus,580165,,,,established,,,"Guinebretiere, Marie-Helene, et al. ""Bacillus cytotoxicus sp. nov. is a novel thermotolerant species of the Bacillus cereus group occasionally associated with food poisoning.""ÊInternational journal of systematic and evolutionary microbiologyÊ63.Pt_1 (2013): 31-40.", Serratia liquefaciens,614,,,,established,,,"Grohskopf, Lisa A., et al. ""Serratia liquefaciens bloodstream infections from contamination of epoetin alfa at a hemodialysis center.""New England Journal of Medicine344.20 (2001): 1491-1497.", -Actinobaculum massiliae,202789,,,,putative,,,"Greub, Gilbert, and Didier Raoult. ""'Actinobaculum massiliae,' a new species causing chronic urinary tract infection.""Journal of clinical microbiology40.11 (2002): 3938-3941.", +Actinobaculum massiliae,202789,,,,putative,,,"Greub, Gilbert, and Didier Raoult. ""'Actinobaculum massiliae,' a new species causing chronic urinary tract infection.""ÊJournal of clinical microbiologyÊ40.11 (2002): 3938-3941.", Granulibacter bethesdensis,364410,,,,established,,,"Greenberg, David E., et al. ""Granulibacter bethesdensis gen. nov., sp. nov., a distinctive pathogenic acetic acid bacterium in the family Acetobacteraceae."" International journal of systematic and evolutionary microbiology 56.11 (2006): 2609-2616.", Burkholderia gladioli,28095,,,,established,,,"Graves, Margot, et al. ""Four additional cases of Burkholderia gladioli infection with microbiological correlates and review.""Clinical infectious diseases25.4 (1997): 838-842.", Shewanella algae,38313,,,,established,,,"Goyal, Renu, Narinder Kaur, and Rajeev Thakur. ""Human soft tissue infection by the emerging pathogen Shewanella algae.""The Journal of Infection in Developing Countries5.04 (2011): 310-312.", -Rickettsia slovaca,1105109,,,,established,,,"Gouriet, Frederique, Jean-Marc Rolain, and Didier Raoult. ""Rickettsia slovaca infection, France.""Emerging infectious diseases12.3 (2006): 521.", +Rickettsia slovaca,1105109,,,,established,,,"Gouriet, Frederique, Jean-Marc Rolain, and Didier Raoult. ""Rickettsia slovaca infection, France.""ÊEmerging infectious diseasesÊ12.3 (2006): 521.", Acetobacter cibinongensis,146475,,,,putative,,,"Gouby, Anne, et al. ""Acetobacter cibinongensis bacteremia in human.""Emerging infectious diseases13.5 (2007): 784.", -Chryseobacterium oranimense,421058,,,,putative,,,"Gonzalez, Serena Villaverde, et al. ""Bacteremia by Chryseobacterium oranimense, A Colistin-Resistant Gram-Negative Bacilli, in an Immunocompetent Pediatric Patient.""The Pediatric Infectious Disease Journal38.2 (2019): 217-218.", +Chryseobacterium oranimense,421058,,,,putative,,,"Gonzalez, Serena Villaverde, et al. ""Bacteremia by Chryseobacterium oranimense, A Colistin-Resistant Gram-Negative Bacilli, in an Immunocompetent Pediatric Patient.""ÊThe Pediatric Infectious Disease JournalÊ38.2 (2019): 217-218.", Parvimonas micra,33033,,,,established,,,"Gomez, Carlos A., et al. ""First case of infectious endocarditis caused by Parvimonas micra.""Anaerobe36 (2015): 53-55.", -Scedosporium apiospermum,563466,opportunistic,,,established,,,"Goldman, Chloe, et al. ""Scedosporium apiospermum infections and the role of combination antifungal therapy and GM-CSF: A case report and review of the literature.""Medical mycology case reports11 (2016): 40-43.", +Scedosporium apiospermum,563466,opportunistic,,,established,,,"Goldman, Chloe, et al. ""Scedosporium apiospermum infections and the role of combination antifungal therapy and GM-CSF: A case report and review of the literature.""ÊMedical mycology case reportsÊ11 (2016): 40-43.", Salmonella enterica,28901,primary,,gut,established,,,"Glynn, M. Kathleen, et al. ""Emergence of Multidrug-Resistant Salmonella enterica SerotypeTyphimurium DT104 Infections in the United States.""New England Journal of Medicine338.19 (1998): 1333-1339.", Prevotella timonensis,nan,,,,putative,,,"Glazunova, Olga O., et al. ""Prevotella timonensis sp. nov., isolated from a human breast abscess.""International journal of systematic and evolutionary microbiology57.4 (2007): 883-886.", Streptococcus massiliensis,1306,,,,putative,,,"Glazunova, Olga O., Didier Raoult, and Veronique Roux. ""Streptococcus massiliensis sp. nov., isolated from a patient blood culture.""International journal of systematic and evolutionary microbiology56.5 (2006): 1127-1131.", @@ -1252,11 +1252,11 @@ Histoplasma capsulatum,447093,primary,,,established,,,"Georgiev, V.S. (2003). Hi Peptoniphilus harei,54005,,,,established,,,"Gateley, Christopher Alan. ""Primary actinomycosis of the breast caused by Actinomyces turicensis with associated Peptoniphilus harei.""Breast disease35.1 (2015): 45-47.", Chryseobacterium gleum,250,,,,established,,,"Garg, S., et al. ""Pyonephrosis due to Chryseobacterium gleum: a first case report.""Indian journal of medical microbiology33.2 (2015): 311.", Clostridium lavalense,360422,,,,putative,,,"Garceau, Richard, et al. ""First report of Clostridium lavalense isolated in human blood cultures.""Canadian Journal of Infectious Diseases and Medical Microbiology2016 (2016)", -Bacteroides coagulans,nan,,,,putative,,,"Garcia-Tornel, S., et al. ""Bacteroides coagulans osteoarthritis.""The Pediatric Infectious Disease Journal2.6 (1983): 472-474.", +Bacteroides coagulans,nan,,,,putative,,,"Garcia-Tornel, S., et al. ""Bacteroides coagulans osteoarthritis.""ÊThe Pediatric Infectious Disease JournalÊ2.6 (1983): 472-474.", Pseudomonas mendocina,300,,,,established,,,"Gani, Melony, et al. ""Pseudomonas mendocina bacteremia: A case study and review of literature.""The American journal of case reports20 (2019): 453.", -Corynebacterium glucuronolyticum,39791,,,,established,,,"Galan-Sanchez, Fatima, et al. ""Urethritis due to Corynebacterium glucuronolyticum.""Journal of infection and chemotherapy17.5 (2011): 720-721.", -Nocardia veterana,132249,,,,established,,,"Gurtler, Volker, et al. ""Nocardia veterana sp. nov., isolated from human bronchial lavage.""International journal of systematic and evolutionary microbiology51.3 (2001): 933-936.", -Dermabacter hominis,36740,,,,established,,,"Gomez-Garces, Jose Luis, et al. ""Bacteremia by Dermabacter hominis, a rare pathogen.""Journal of clinical microbiology39.6 (2001): 2356-2357.", +Corynebacterium glucuronolyticum,39791,,,,established,,,"Galan-Sanchez, Fatima, et al. ""Urethritis due to Corynebacterium glucuronolyticum.""ÊJournal of infection and chemotherapyÊ17.5 (2011): 720-721.", +Nocardia veterana,132249,,,,established,,,"Gurtler, Volker, et al. ""Nocardia veterana sp. nov., isolated from human bronchial lavage.""ÊInternational journal of systematic and evolutionary microbiologyÊ51.3 (2001): 933-936.", +Dermabacter hominis,36740,,,,established,,,"Gomez-Garces, Jose Luis, et al. ""Bacteremia by Dermabacter hominis, a rare pathogen.""ÊJournal of clinical microbiologyÊ39.6 (2001): 2356-2357.", Paracoccus yeeii,147645,,,,established,,,"Funke, Guido, Reinhard Frodl, and Hartmut Sommer. ""First comprehensively documented case of Paracoccus yeei infection in a human.""Journal of clinical microbiology42.7 (2004): 3366-3368.", Corynebacterium auris,44750,,,,established,,,"Funke, Guido, Paul A. Lawson, and Matthew D. Collins. ""Heterogeneity within human-derived centers for disease control and prevention (CDC) coryneform group ANF-1-like bacteria and description of Corynebacterium auris sp. nov.""International Journal of Systematic and Evolutionary Microbiology45.4 (1995): 735-739.", Corynebacterium riegelii,156976,,,,established,,,"Funke, Guido, Paul A. Lawson, and Matthew D. Collins. ""Corynebacterium riegelii sp. nov., an unusual species isolated from female patients with urinary tract infections.""Journal of clinical microbiology36.3 (1998): 624-627.", @@ -1283,10 +1283,10 @@ Campylobacter infans,2561898,,,,putative,,,"Flipse, Jacky, et al. ""A Case of Pe Brucella abortus,235,,,,established,,,"Fiori, Pier Luigi, et al. ""Brucella abortus infection acquired in microbiology laboratories.""Journal of clinical microbiology38.5 (2000): 2005-2006.", Porphyromonas uenonis,281920,,,,established,,,"Finegold, Sydney M., et al. ""Porphyromonas uenonis sp. nov., a pathogen for humans distinct from P. asaccharolytica and P. endodontalis.""Journal of clinical microbiology42.11 (2004): 5298-5301.", Campylobacter mucosalis,202,,,,established,,,"Figura, Natale, et al. ""Two cases of Campylobacter mucosalis enteritis in children.""Journal of clinical microbiology31.3 (1993): 727-728.", -Aeromonas aquariorum,nan,,,,established,,,"Figueras, M. Jose, et al. ""Clinical relevance of the recently described species Aeromonas aquariorum.""Journal of clinical microbiology47.11 (2009): 3742-3746.", +Aeromonas aquariorum,nan,,,,established,,,"Figueras, M. Jose, et al. ""Clinical relevance of the recently described species Aeromonas aquariorum.""ÊJournal of clinical microbiologyÊ47.11 (2009): 3742-3746.", Corynebacterium tuberculostearicum,38304,,,,established,,,"Feurer, Carole, et al. ""Taxonomic characterization of nine strains isolated from clinical and environmental specimens, and proposal of Corynebacterium tuberculostearicum sp. nov.""International journal of systematic and evolutionary microbiology54.4 (2004): 1055-1061.", Paenibacillus glucanolyticus,59843,,,,putative,,,"Ferrand, Janina, et al. ""Cardiac device-related endocarditis caused by Paenibacillus glucanolyticus.""Journal of clinical microbiology51.10 (2013): 3439-3442.", -Corynebacterium coyleae,53374,,,,established,,,"Fernandez-Natal, M. I., et al. ""The isolation of Corynebacterium coyleae from clinical samples: clinical and microbiological data.""European Journal of Clinical Microbiology & Infectious Diseases27 (2008): 177-184.", +Corynebacterium coyleae,53374,,,,established,,,"Fernandez-Natal, M. I., et al. ""The isolation of Corynebacterium coyleae from clinical samples: clinical and microbiological data.""ÊEuropean Journal of Clinical Microbiology & Infectious DiseasesÊ27 (2008): 177-184.", Tropheryma whipplei,218496,,,,established,,,"Fenollar, Florence, et al. ""Tropheryma whipplei endocarditis.""Emerging infectious diseases19.11 (2013): 1721.", Bacteroides massiliensis,1750560,,,,putative,,,"Fenner, Lukas, et al. ""Bacteroides massiliensis sp. nov., isolated from blood culture of a newborn.""International journal of systematic and evolutionary microbiology55.3 (2005): 1335-1337.", Neoehrlichia mikurensis,89586,,,,established,,,"Fehr, Jan S., et al. ""Septicemia caused by tick-borne bacterial pathogen Candidatus Neoehrlichia mikurensis.""Emerging infectious diseases16.7 (2010): 1127.", @@ -1294,7 +1294,7 @@ Listeria innocua,1642,,,,established,,,"Favaro, Marco, et al. ""First case of Li Mycobacterium parmense,185642,,,,putative,,,"Fanti, Franco, et al. ""Mycobacterium parmense sp. nov.""International journal of systematic and evolutionary microbiology54.4 (2004): 1123-1127.", Fastidiosipila sanguinis,236753,,,,established,,,"Falsen, Enevold, et al. ""Fastidiosipila sanguinis gen. nov., sp. nov., a new Gram-positive, coccus-shaped organism from human blood.""International journal of systematic and evolutionary microbiology55.2 (2005): 853-858.", Streptococcus porcinus,1340,,,,established,,,"Facklam, R., et al. ""Identification of Streptococcus porcinus from human sources.""Journal of clinical microbiology33.2 (1995): 385-388.", -Borrelia spielmanii,88916,,,,established,,,"Foldvari, Gabor, Robert Farkas, and Andras Lakos. ""Borrelia spielmanii erythema migrans, Hungary.""Emerging infectious diseases11.11 (2005): 1794.", +Borrelia spielmanii,88916,,,,established,,,"Foldvari, Gabor, Robert Farkas, and Andras Lakos. ""Borrelia spielmanii erythema migrans, Hungary.""ÊEmerging infectious diseasesÊ11.11 (2005): 1794.", Nocardia amikacinitolerans,756689,,,,established,,,"Ezeoke, Ifeoma, et al. ""Nocardia amikacinitolerans sp. nov., an amikacin-resistant human pathogen.""International journal of systematic and evolutionary microbiology63.Pt_3 (2013): 1056-1061.", Spiroplasma apis,1276258,,,,putative,,,"Etienne, Nicolas, et al. ""Disseminated Spiroplasma apis infection in patient with agammaglobulinemia, France.""Emerging infectious diseases24.12 (2018): 2382.", Brevundimonas vancanneytii,1871086,,,,putative,,,"Estrela, Andreia B., and Wolf-Rainer Abraham. ""Brevundimonas vancanneytii sp. nov., isolated from blood of a patient with endocarditis."" (2010).", @@ -1308,7 +1308,7 @@ Leptotrichia shahii,157691,,,,putative,,,"Eribe, Emenike RK, et al. ""Genetic di Leptotrichia wadei,157687,,,,putative,,,"Eribe, Emenike RK, et al. ""Genetic diversity of Leptotrichia and description of Leptotrichia goodfellowii sp. nov., Leptotrichia hofstadii sp. nov., Leptotrichia shahii sp. nov. and Leptotrichia wadei sp. nov.""International journal of systematic and evolutionary microbiology54.2 (2004): 583-592.", Nocardia donostiensis,1538463,,,,established,,,"Ercibengoa, Maria, et al. ""Nocardia donostiensis sp. nov., isolated from human respiratory specimens.""Antonie van Leeuwenhoek109.5 (2016): 653-660.", Actinomyces viscosus,1656,opportunistic,oral,,established,,,"Eng, Robert HK, et al. ""Infections caused by Actinomyces viscosus.""American journal of clinical pathology75.1 (1981): 113-116.", -Peptoniphilus nemausus,2582829,,,,putative,,,"Enault, Ccilia, et al. ""Surgical site infection after hip replacement due to a novel Peptoniphilus species, provisionally named 'Peptoniphilus nemausus' sp. nov.""Anaerobe61 (2020): 102071.", +Peptoniphilus nemausus,2582829,,,,putative,,,"Enault, CŽcilia, et al. ""Surgical site infection after hip replacement due to a novel Peptoniphilus species, provisionally named 'Peptoniphilus nemausus' sp. nov.""ÊAnaerobeÊ61 (2020): 102071.", Mycobacterium microti,1806,,,,established,,,"Emmanuel, Francis Xavier, et al. ""Human and animal infections with Mycobacterium microti, Scotland.""Emerging infectious diseases13.12 (2007): 1924.", Hungatella hathewayi,154046,,,,established,,,"Elsayed, Sameer, and Kunyan Zhang. ""Human infection caused by Clostridium hathewayi.""Emerging infectious diseases10.11 (2004): 1950.", Janibacter melonis,262209,,,,putative,,,"Elsayed, Sameer, and Kunyan Zhang. ""Bacteremia caused by Janibacter melonis.""Journal of clinical microbiology43.7 (2005): 3537-3539.", @@ -1326,7 +1326,7 @@ Stenotrophomonas africana,69392,,,,putative,,,"Drancourt, M., C. Bollet, and D. Streptococcus oralis,1303,,,,established,,,"Doyuk, Elif, Oliver J. Ormerod, and Ian CJW Bowler. ""Native valve endocarditis due to Streptococcus vestibularis and Streptococcus oralis.""Journal of Infection45.1 (2002): 39-41.", Shuttleworthia satelles,177972,,,,established,,,"Downes, Julia, et al. ""Shuttleworthia satelles gen. nov., sp. nov., isolated from the human oral cavity.""International journal of systematic and evolutionary microbiology52.5 (2002): 1469-1475.", Scardovia wiggsiae,857290,,,,established,,,"Downes, Julia, et al. ""Scardovia wiggsiae sp. nov., isolated from the human oral cavity and clinical material, and emended descriptions of the genus Scardovia and Scardovia inopinata.""International journal of systematic and evolutionary microbiology61.1 (2011): 25-29.", -Pyramidobacter piscolens,638849,,,,established,,,"Downes, Julia, et al. ""Pyramidobacter piscolens gen. nov., sp. nov., a member of the phylum 'Synergistetes' isolated from the human oral cavity.""International journal of systematic and evolutionary microbiology59.Pt 5 (2009): 972.", +Pyramidobacter piscolens,638849,,,,established,,,"Downes, Julia, et al. ""Pyramidobacter piscolens gen. nov., sp. nov., a member of the phylum 'Synergistetes' isolated from the human oral cavity.""ÊInternational journal of systematic and evolutionary microbiologyÊ59.Pt 5 (2009): 972.", Prevotella baroniae,nan,,,,established,,,"Downes, Julia, et al. ""Prevotella marshii sp. nov. and Prevotella baroniae sp. nov., isolated from the human oral cavity.""International journal of systematic and evolutionary microbiology55.4 (2005): 1551-1555.", Prevotella marshii,nan,,,,established,,,"Downes, Julia, et al. ""Prevotella marshii sp. nov. and Prevotella baroniae sp. nov., isolated from the human oral cavity.""International journal of systematic and evolutionary microbiology55.4 (2005): 1551-1555.", Prevotella maculosa,nan,,,,established,,,"Downes, Julia, et al. ""Prevotella maculosa sp. nov., isolated from the human oral cavity.""International journal of systematic and evolutionary microbiology57.12 (2007): 2936-2939.", @@ -1341,11 +1341,11 @@ Enterobacter bugandensis,881260,,,,established,,,"Doijad, Swapnil, et al. ""Ente Neorickettsia sennetsu,222891,opportunistic,blood,,established,,fish,"Dittrich, Sabine, et al. ""Neorickettsia sennetsu as a neglected cause of fever in South-East Asia.""PLoS neglected tropical diseases9.7 (2015): e0003908.", Corynebacterium fournieri,1852390,potential,vaginal,,putative,,,"Diop, Khoudia, et al. ""Corynebacterium fournierii sp. nov., isolated from the female genital tract of a patient with bacterial vaginosis.""Antonie van Leeuwenhoek111.7 (2018): 1165-1174.", Collinsella vaginalis,1870987,potential,vaginal,,putative,,,"Diop, Awa, et al. ""Collinsella vaginalis sp. nov. strain Marseille-P2666T, a new member of the Collinsella genus isolated from the genital tract of a patient suffering from bacterial vaginosis.""International journal of systematic and evolutionary microbiology69.4 (2019): 949-956", -Ignatzschineria larvae,1111732,opportunistic,blood,,putative,,flies,"DiFranza, Lanny T., et al. ""The brief case: a maggot mystery-Ignatzschineria larvae sepsis secondary to an infested wound.""Journal of clinical microbiology59.3 (2021): 10-1128", +Ignatzschineria larvae,1111732,opportunistic,blood,,putative,,flies,"DiFranza, Lanny T., et al. ""The brief case: a maggot mystery-Ignatzschineria larvae sepsis secondary to an infested wound.""ÊJournal of clinical microbiologyÊ59.3 (2021): 10-1128", Francisella opportunistica,2016517,opportunistic,blood,,putative,,,"Dietrich, Elizabeth A., et al. ""Francisella opportunistica sp. nov., isolated from human blood and cerebrospinal fluid.""International journal of systematic and evolutionary microbiology70.2 (2020): 1145.", Lactobacillus gasseri,1596,commensal,,vaginal,established,,,"Dickgiesser, U., N. Weiss, and D. Fritsche. ""Lactobacillus gasseri as the cause of septic urinary infection.""Infection12.1 (1984): 14-16.", -Paenibacillus thiaminolyticus,49283,opportunistic,"blood, urine",,established,,,"Di Micco, Riccardo, Matthias Schneider, and Reto Nuesch. ""Postoperative Paenibacillus thiaminolyticus wound infection, Switzerland.""Emerging Infectious Diseases27.7 (2021): 1984.", -Zopfia rosatii,nan,opportunistic,,,established,,,"Destombes, P., et al. ""Mycetoma in Somalia-results of a survey done from 1959 to 1964.""Acta Tropica34.4 (1977): 355-373.", +Paenibacillus thiaminolyticus,49283,opportunistic,"blood, urine",,established,,,"Di Micco, Riccardo, Matthias Schneider, and Reto Nuesch. ""Postoperative Paenibacillus thiaminolyticus wound infection, Switzerland.""ÊEmerging Infectious DiseasesÊ27.7 (2021): 1984.", +Zopfia rosatii,nan,opportunistic,,,established,,,"Destombes, P., et al. ""Mycetoma in Somalia-results of a survey done from 1959 to 1964.""ÊActa TropicaÊ34.4 (1977): 355-373.", Psychrobacter faecalis,180588,potential,,,established,,,"Deschaght, Pieter, et al. ""Psychrobacter isolates of human origin, other than Psychrobacter phenylpyruvicus, are predominantly Psychrobacter faecalis and Psychrobacter pulmonis, with emended description of P. faecalis.""International journal of systematic and evolutionary microbiology62.Pt_3 (2012): 671-674.", Aeromonas tecta,324617,,,,putative,,,"Demarta, Antonella, et al. ""Aeromonas tecta sp. nov., isolated from clinical and environmental sources.""Systematic and Applied Microbiology31.4 (2008): 278-286.", Enterococcus cecorum,44008,potential,"blood, urine",,established,,,"Delaunay, E., C. Abat, and J-M. Rolain. ""Enterococcus cecorum human infection, France.""New microbes and new infections7 (2015): 50-51.", @@ -1369,15 +1369,15 @@ Clostridium innocuum,1522,commensal,blood,gut,established,,,"Cutrona, Anthony F. Rhodococcus globerulus,33008,,,,putative,,,"Cuello, Osvaldo H., et al. ""Rhodococcus globerulus keratitis after laser in situ keratomileusis.""Journal of Cataract & Refractive Surgery28.12 (2002): 2235-2237.", Bifidobacterium denticolens,41200,primary,teeth,,established,dental caries,,"Crociani, F., et al. ""Bifidobacterium inopinatum sp. nov. and Bifidobacterium denticolens sp. nov., two new species isolated from human dental caries.""International Journal of Systematic and Evolutionary Microbiology46.2 (1996): 564-571.", Bifidobacterium inopinatum,41200,primary,teeth,,established,dental caries,,"Crociani, F., et al. ""Bifidobacterium inopinatum sp. nov. and Bifidobacterium denticolens sp. nov., two new species isolated from human dental caries.""International Journal of Systematic and Evolutionary Microbiology46.2 (1996): 564-571.", -Chitinophaga terrae,408074,,,,putative,,,"Cremet, Lise, et al. ""Chitinophaga terrae bacteremia in human.""Emerging Infectious Diseases15.7 (2009): 1134.", +Chitinophaga terrae,408074,,,,putative,,,"Cremet, Lise, et al. ""Chitinophaga terrae bacteremia in human.""ÊEmerging Infectious DiseasesÊ15.7 (2009): 1134.", Budvicia aquatica,82979,,,,putative,,,"Corbin, Angela, et al. ""Budvicia aquatica sepsis in an immunocompromised patient following exposure to the aftermath of Hurricane Katrina.""Journal of medical microbiology56.8 (2007): 1124-1125.", Pseudomonas japonica,256466,,,,putative,,,"Coomes, Eric, et al. ""Pseudomonas japonica: a novel cause of bacteremia and skin and soft tissue infection.""Infectious Diseases in Clinical Practice26.5 (2018): e43-e44.", -Atopobium deltae,1393034,,,,putative,,,"Cools, Piet, et al. ""Atopobium deltae sp. nov., isolated from the blood of a patient with Fournier's gangrene.""International journal of systematic and evolutionary microbiology64.Pt_9 (2014): 3140-3145.", +Atopobium deltae,1393034,,,,putative,,,"Cools, Piet, et al. ""Atopobium deltae sp. nov., isolated from the blood of a patient with Fournier's gangrene.""ÊInternational journal of systematic and evolutionary microbiologyÊ64.Pt_9 (2014): 3140-3145.", Bordetella hinzii,103855,opportunistic,"blood, skin, urine",,established,,,"Cookson, B. T., et al. ""Bacteremia caused by a novel Bordetella species,"" B. hinzii"".""Journal of Clinical Microbiology32.10 (1994): 2569-2571.", Mycobacterium cosmeticum,258533,potential,,,established,,,"Cooksey, Robert C., et al. ""Mycobacterium cosmeticum sp. nov., a novel rapidly growing species isolated from a cosmetic infection and from a nail salon.""International journal of systematic and evolutionary microbiology54.6 (2004): 2385-2391.", -Nocardia blacklockiae,480036,potential,"abscess, resp, sputum",,putative,,,"Conville, Patricia S., et al. ""Nocardia wallacei sp. nov. and Nocardia blacklockiae sp. nov., human pathogens and members of the 'Nocardia transvalensis Complex'.""Journal of clinical microbiology46.4 (2008): 1178-1184.", -Nocardia wallacei,480035,opportunistic,"abscess, blood, sputum",,established,,,"Conville, Patricia S., et al. ""Nocardia wallacei sp. nov. and Nocardia blacklockiae sp. nov., human pathogens and members of the 'Nocardia transvalensis Complex'.""Journal of clinical microbiology46.4 (2008): 1178-1184.", -Nocardia kruczakiae,261477,potential,resp,,putative,,,"Conville, Patricia S., et al. ""Nocardia kruczakiae sp. nov., a pathogen in immunocompromised patients and a member of the 'N. nova complex'.""Journal of clinical microbiology42.11 (2004): 5139-5145.", +Nocardia blacklockiae,480036,potential,"abscess, resp, sputum",,putative,,,"Conville, Patricia S., et al. ""Nocardia wallacei sp. nov. and Nocardia blacklockiae sp. nov., human pathogens and members of the 'Nocardia transvalensis Complex'.""ÊJournal of clinical microbiologyÊ46.4 (2008): 1178-1184.", +Nocardia wallacei,480035,opportunistic,"abscess, blood, sputum",,established,,,"Conville, Patricia S., et al. ""Nocardia wallacei sp. nov. and Nocardia blacklockiae sp. nov., human pathogens and members of the 'Nocardia transvalensis Complex'.""ÊJournal of clinical microbiologyÊ46.4 (2008): 1178-1184.", +Nocardia kruczakiae,261477,potential,resp,,putative,,,"Conville, Patricia S., et al. ""Nocardia kruczakiae sp. nov., a pathogen in immunocompromised patients and a member of the 'N. nova complex'.""ÊJournal of clinical microbiologyÊ42.11 (2004): 5139-5145.", Facklamia sourekii,nan,,,,established,,,"Collins, Matthew D., et al. ""NOTE: Facklamia sourekii sp. nov., isolated from human sources.""International Journal of Systematic and Evolutionary Microbiology49.2 (1999): 635-638.", Luteococcus peritonei,nan,,,,putative,,,"Collins, Matthew D., et al. ""Luteococcus sanguinis sp. nov., isolated from human blood.""International journal of systematic and evolutionary microbiology53.6 (2003): 1889-1891.", Luteococcus sanguinis,1305,potential,blood,,putative,,,"Collins, Matthew D., et al. ""Luteococcus sanguinis sp. nov., isolated from human blood.""International journal of systematic and evolutionary microbiology53.6 (2003): 1889-1891.", @@ -1385,10 +1385,10 @@ Ignavigranum ruoffiae,89093,opportunistic,abscess,skin,established,,,"Collins, M Helcococcus sueciensis,241555,potential,"abscess, blood",,putative,,,"Collins, Matthew D., et al. ""Helcococcus sueciensis sp. nov., isolated from a human wound.""International Journal of Systematic and Evolutionary Microbiology54.5 (2004): 1557-1560.", Facklamia ignava,nan,,,,putative,,,"Collins, Matthew D., et al. ""Facklamia ignava sp. nov., isolated from human clinical specimens.""Journal of clinical microbiology36.7 (1998): 2146-2148.", Corynebacterium sundsvallense,1720,potential,blood,,established,,,"Collins, Matthew D., et al. ""Corynebacterium sundsvallense sp. nov., from human clinical specimens.""International Journal of Systematic and Evolutionary Microbiology49.2 (1999): 361-366.", -Sneathia sanguinegens,40543,potential,vaginal,,established,,,"Collins, Matthew D., et al. ""Characterization of some Strains from Human Clinical Sources which resemble 'Leptotrichia sanguinegens': Description of Sneathia sanguinegens sp. nov., gen. nov.""Systematic and applied microbiology24.3 (2001): 358-361.", +Sneathia sanguinegens,40543,potential,vaginal,,established,,,"Collins, Matthew D., et al. ""Characterization of some Strains from Human Clinical Sources which resemble 'Leptotrichia sanguinegens': Description of Sneathia sanguinegens sp. nov., gen. nov.""ÊSystematic and applied microbiologyÊ24.3 (2001): 358-361.", Actinomyces radicidentis,111015,potential,oral,,putative,,,"Collins, Matthew D., et al. ""Characterization of Actinomyces isolates from infected root canals of teeth: description of Actinomyces radicidentis sp. nov.""Journal of Clinical Microbiology38.9 (2000): 3399-3403.", Cupriavidus respiraculi,195930,potential,resp,,established,,,"Coenye, Tom, Peter Vandamme, and John J. LiPuma. ""Ralstonia respiraculi sp. nov., isolated from the respiratory tract of cystic fibrosis patients.""International journal of systematic and evolutionary microbiology53.5 (2003): 1339-1342.", -Kerstersia gyiorum,206506,opportunistic,"abscess, blood, sputum",,established,,,"Coenye, Tom, et al. ""Kerstersia gyiorum gen. nov., sp. nov., a novel Alcaligenes faecalis-like organism isolated from human clinical samples, and reclassification of Alcaligenes denitrificans Rüger and Tan 1983 as Achromobacter denitrificans comb. nov.""International Journal of Systematic and Evolutionary Microbiology53.6 (2003): 1825-1831.", +Kerstersia gyiorum,206506,opportunistic,"abscess, blood, sputum",,established,,,"Coenye, Tom, et al. ""Kerstersia gyiorum gen. nov., sp. nov., a novel Alcaligenes faecalis-like organism isolated from human clinical samples, and reclassification of Alcaligenes denitrificans Rüger and Tan 1983 as Achromobacter denitrificans comb. nov.""International Journal of Systematic and Evolutionary Microbiology53.6 (2003): 1825-1831.", Pandoraea pulmonicola,93221,opportunistic,"blood, sputum",,established,,,"Coenye, Tom, et al. ""Description of Pandoraea gen. nov. with Pandoraea apista sp. nov., Pandoraea pulmonicola sp. nov., Pandoraea pnomenusa sp. nov., Pandoraea sputorum sp. nov. and Pandoraea norimbergensis comb. nov.""International journal of systematic and evolutionary microbiology50.2 (2000): 887-899.", Pandoraea apista,93218,opportunistic,"blood, sputum",,established,,,"Coenye, Tom, et al. ""Description of Pandoraea gen. nov. with Pandoraea apista sp. nov., Pandoraea pulmonicola sp. nov., Pandoraea pnomenusa sp. nov., Pandoraea sputorum sp. nov. and Pandoraea norimbergensis comb. nov.""International journal of systematic and evolutionary microbiology50.2 (2000): 887-899.", Pandoraea pnomenusa,93220,opportunistic,"blood, sputum",,established,,,"Coenye, Tom, et al. ""Description of Pandoraea gen. nov. with Pandoraea apista sp. nov., Pandoraea pulmonicola sp. nov., Pandoraea pnomenusa sp. nov., Pandoraea sputorum sp. nov. and Pandoraea norimbergensis comb. nov.""International journal of systematic and evolutionary microbiology50.2 (2000): 887-899.", @@ -1401,11 +1401,11 @@ Achromobacter insolitus,217204,potential,"abscess, blood",,putative,,,"Coenye, T Achromobacter spanius,217203,potential,blood,,putative,,,"Coenye, Tom, et al. ""Achromobacter insolitus sp. nov. and Achromobacter spanius sp. nov., from human clinical samples.""International Journal of Systematic and Evolutionary Microbiology53.6 (2003): 1819-1824.", Parabacteroides goldsteinii,328812,commensal,blood,gut,putative,,,"Cobo, Fernando, et al. ""Parabacteroides goldsteinii abdominal infection in a patient with lymphoma.""Infectious diseases now(2021): S2666-9919.", Bacteroides fluxus,626930,potential,blood,"gut, stool",putative,,,"Cobo, Fernando, et al. ""First case of abdominal infection caused by Bacteroides fluxus.""Anaerobe69 (2021): 102363.", -Anaerococcus octavius,54007,potential,blood,,putative,,,"Cobo, Fernando, and Jose Maria Navarro-Mari. ""First description of Anaerococcus octavius as cause of bacteremia.""Anaerobe61 (2020): 102130.", +Anaerococcus octavius,54007,potential,blood,,putative,,,"Cobo, Fernando, and Jose Maria Navarro-Mari. ""First description of Anaerococcus octavius as cause of bacteremia.""ÊAnaerobeÊ61 (2020): 102130.", Mycobacterium arupense,185642,opportunistic,"abscess, blood, sputum, skin",,established,,,"Cloud, Joann L., et al. ""Mycobacterium arupense sp. nov., a non-chromogenic bacterium isolated from clinical specimens."" International Journal of Systematic and Evolutionary Microbiology 56.6 (2006): 1413-1418.", Citrobacter pasteurii,1563222,potential,"abscess, stool",,established,,,"Clermont, Dominique, et al. ""Multilocus sequence analysis of the genus Citrobacter and description of Citrobacter pasteurii sp. nov.""International journal of systematic and evolutionary microbiology65.Pt_5 (2015): 1486-1490.", Microbacterium binotii,462710,potential,blood,,putative,,,"Clermont, D., et al. ""Microbacterium binotii sp. nov., isolated from human blood.""International journal of systematic and evolutionary microbiology59.5 (2009): 1016-1022.", -Sodalis praecaptivus,1239307,potential,blood,,putative,,insect,"Clayton, Adam L., et al. ""A novel human-infection-derived bacterium provides insights into the evolutionary origins of mutualistic insectbacterial symbioses.""PLoS genetics8.11 (2012): e1002990.", +Sodalis praecaptivus,1239307,potential,blood,,putative,,insect,"Clayton, Adam L., et al. ""A novel human-infection-derived bacterium provides insights into the evolutionary origins of mutualistic insectÐbacterial symbioses.""ÊPLoS geneticsÊ8.11 (2012): e1002990.", Pseudomonas otitidis,319939,potential,skin,,established,,,"Clark, Linda L., et al. ""Pseudomonas otitidis sp. nov., isolated from patients with otic infections.""International journal of systematic and evolutionary microbiology56.4 (2006): 709-714.", Peptoniphilus coxii,755172,potential,blood,,putative,,,"Citron, Diane M., Kerin L. Tyrrell, and Ellie JC Goldstein. ""Peptoniphilus coxii sp. nov. and Peptoniphilus tyrrelliae sp. nov. isolated from human clinical infections.""Anaerobe18.2 (2012): 244-248.", Peptoniphilus tyrrelliae,1971214,opportunistic,"abcess, blood",,established,,,"Citron, Diane M., Kerin L. Tyrrell, and Ellie JC Goldstein. ""Peptoniphilus coxii sp. nov. and Peptoniphilus tyrrelliae sp. nov. isolated from human clinical infections.""Anaerobe18.2 (2012): 244-248.", @@ -1439,22 +1439,22 @@ Streptococcus alactolyticus,29389,potential,blood,,established,,,"Cekmen, Nedim, Psychrobacter arenosus,256326,opportunistic,blood,,putative,,,"Caspar, Yvan, et al. ""Psychrobacter arenosus bacteremia after blood transfusion, France.""Emerging infectious diseases19.7 (2013): 1118.", Mycobacterium flavescens,69366,potential,,,established,,,"Casimir, Mirtha T., Victor Fainstein, and Nicholas Papadopolous. ""Cavitary lung infection caused by Mycobacterium flavescens.""Southern medical journal75.2 (1982): 253-254.", Chryseobacterium indologenes,253,opportunistic,blood,,established,,,"Cascio, Antonio, et al. ""Chryseobacterium indologenes bacteraemia in a diabetic child.""Journal of medical microbiology54.7 (2005): 677-680.", -Actinomadura pelletieri,1120940,potential,,,established,,,"Cascio, Antonio, et al. ""Actinomadura pelletieri mycetoma-an atypical case with spine and abdominal wall involvement.""Journal of medical microbiology60.5 (2011): 673-676.", -Mogibacterium timidum,35519,potential,"oral, sputum",,established,,,"Casarin, Renato Correa Viana, et al. ""Detection of Mogibacterium timidum in subgingival biofilm of aggressive and non-diabetic and diabetic chronic periodontitis patients.""Brazilian Journal of Microbiology43 (2012): 931-937.", +Actinomadura pelletieri,1120940,potential,,,established,,,"Cascio, Antonio, et al. ""Actinomadura pelletieri mycetoma-an atypical case with spine and abdominal wall involvement.""ÊJournal of medical microbiologyÊ60.5 (2011): 673-676.", +Mogibacterium timidum,35519,potential,"oral, sputum",,established,,,"Casarin, Renato Correa Viana, et al. ""Detection of Mogibacterium timidum in subgingival biofilm of aggressive and non-diabetic and diabetic chronic periodontitis patients.""ÊBrazilian Journal of MicrobiologyÊ43 (2012): 931-937.", Pseudomonas luteola,47886,opportunistic,"abscess, blood",,established,,,"Casalta, Jean-Paul, et al. ""Prosthetic valve endocarditis caused by Pseudomonas luteola.""BMC infectious Diseases5.1 (2005): 1-3.", Mycobacterium gadium,1764,potential,sputum,,putative,,,"Casal, M., and Calero Rey. ""Mycobacterium gadium sp. nov. a new species of rapid-growing scotochromogenic mycobacteria.""Tubercle55.4 (1974): 299-308.", -Actinobaculum massiliense,202789,opportunistic,"blood, skin, urine","skin, sputum",putative,,,"Carrillo-Avila, Jose Antonio, et al. ""The first reported case of pelvic inflammatory disease caused by Actinobaculum massiliense.""Anaerobe55 (2019): 93-95.", +Actinobaculum massiliense,202789,opportunistic,"blood, skin, urine","skin, sputum",putative,,,"Carrillo-Avila, Jose Antonio, et al. ""The first reported case of pelvic inflammatory disease caused by Actinobaculum massiliense.""ÊAnaerobeÊ55 (2019): 93-95.", Aeromonas schubertii,652,opportunistic,"abcess, blood, skin",,established,,,"Carnahan, A. M., et al. ""Characterization of Aeromonas schubertii strains recently isolated from traumatic wound infections.""Journal of Clinical Microbiology27.8 (1989): 1826-1830.", -Aerococcus christensenii,87541,potential,blood,vaginal,putative,,,"Carlstein, Catrine, Lillian Marie Ses, and Jens Jrgen Christensen. ""Aerococcus christensenii as part of severe polymicrobial chorioamnionitis in a pregnant woman.""The open microbiology journal10 (2016): 27.", -Moryella indoligenes,371674,opportunistic,"abscess, blood, urine",,established,,,"Carlier, Jean-Philippe, Guylene Kouas, and Xiang Y. Han. ""Moryella indoligenes gen. nov., sp. nov., an anaerobic bacterium isolated from clinical specimens.""International journal of systematic and evolutionary microbiology57.4 (2007): 725-729.", -Oribacterium sinus,237576,potential,sinus,,putative,,,"Carlier, Jean-Philippe, et al. ""Oribacterium sinus gen. nov., sp. nov., within the family 'Lachnospiraceae'(phylum Firmicutes).""International journal of systematic and evolutionary microbiology54.5 (2004): 1611-1615.", +Aerococcus christensenii,87541,potential,blood,vaginal,putative,,,"Carlstein, Catrine, Lillian Marie Ses, and Jens Jrgen Christensen. ""Aerococcus christensenii as part of severe polymicrobial chorioamnionitis in a pregnant woman.""The open microbiology journal10 (2016): 27.", +Moryella indoligenes,371674,opportunistic,"abscess, blood, urine",,established,,,"Carlier, Jean-Philippe, Guylene Kouas, and Xiang Y. Han. ""Moryella indoligenes gen. nov., sp. nov., an anaerobic bacterium isolated from clinical specimens.""ÊInternational journal of systematic and evolutionary microbiologyÊ57.4 (2007): 725-729.", +Oribacterium sinus,237576,potential,sinus,,putative,,,"Carlier, Jean-Philippe, et al. ""Oribacterium sinus gen. nov., sp. nov., within the family 'Lachnospiraceae'(phylum Firmicutes).""ÊInternational journal of systematic and evolutionary microbiologyÊ54.5 (2004): 1611-1615.", Clostridium amygdalinum,253257,potential,"abscess, blood",,putative,,,"Carlier, Jean-Philippe, et al. ""First isolation of Clostridium amygdalinum from a patient with chronic osteitis.""Journal of clinical microbiology44.10 (2006): 3842-3844.", Anaeroglobus geminatus,861450,potential,oral,,putative,,,"Carlier, Jean-Philippe, et al. ""Anaeroglobus geminatus gen. nov., sp. nov., a novel member of the family Veillonellaceae.""International journal of systematic and evolutionary microbiology52.3 (2002): 983-986.",https://www.nature.com/articles/s41598-017-04594-9 Leuconostoc pseudomesenteroides,33968,opportunistic,"blood, urine",,established,,,"Cappelli, Elisabete A., et al. ""Leuconostoc pseudomesenteroides as a cause of nosocomial urinary tract infections.""Journal of clinical microbiology37.12 (1999): 4124-4126.", Mycobacterium kyorinense,487514,primary,"absscess, sputum",,established,,,"Campos, Carlos Eduardo Dias, et al. ""First isolation of Mycobacterium kyorinense from clinical specimens in Brazil.""Journal of clinical microbiology50.7 (2012): 2477-2478.", -Tissierella praeacuta,43131,potential,"abscess, blood",gut,established,,,"Camelena, F., et al. ""Infections caused by Tissierella praeacuta: a report of two cases and literature review.""Anaerobe40 (2016): 15-17.", -Actinotignum sanguinis,1445614,potential,"blood, urine",,putative,,,"Calatrava, Elizabeth, Jaime Borrego, and Fernando Cobo. ""Breast abscess due to Trueperella bernardiae and Actinotignum sanguinis."" Revista Española de Quimioterapia 32.2 (2019): 200.", -Mycobacterium llatzerense,280871,opportunistic,abscess,,established,,,"Cardenas, Ana Maria, et al. ""Abdominal abscess caused by Mycobacterium llatzerense.""Journal of Clinical Microbiology52.4 (2014): 1287-1289.", +Tissierella praeacuta,43131,potential,"abscess, blood",gut,established,,,"Camelena, F., et al. ""Infections caused by Tissierella praeacuta: a report of two cases and literature review.""ÊAnaerobeÊ40 (2016): 15-17.", +Actinotignum sanguinis,1445614,potential,"blood, urine",,putative,,,"Calatrava, Elizabeth, Jaime Borrego, and Fernando Cobo. ""Breast abscess due to Trueperella bernardiae and Actinotignum sanguinis."" Revista Española de Quimioterapia 32.2 (2019): 200.", +Mycobacterium llatzerense,280871,opportunistic,abscess,,established,,,"Cardenas, Ana Maria, et al. ""Abdominal abscess caused by Mycobacterium llatzerense.""ÊJournal of Clinical MicrobiologyÊ52.4 (2014): 1287-1289.", Veillonella denticariosi,419208,potential,oral,,putative,,,"Byun, Roy, et al. ""Veillonella denticariosi sp. nov., isolated from human carious dentine.""International journal of systematic and evolutionary microbiology57.12 (2007): 2844-2848.", Corynebacterium auriscanis,99807,opportunistic,"blood, skin",,putative,,dog,"Bygott, Jeanine M., et al. ""First clinical case of Corynebacterium auriscanis isolated from localized dog bite infection.""Journal of medical microbiology57.7 (2008): 899-900.", Corynebacterium aquatimens,1190508,potential,blood,,putative,,,"Bygott, Jeanine M., et al. ""First clinical case of Corynebacterium auriscanis isolated from localized dog bite infection.""Journal of medical microbiology57.7 (2008): 899-900.", @@ -1483,7 +1483,7 @@ Pantoea eucrina,472693,opportunistic,blood,stool,putative,,,"Brady, Carrie L., e Pantoea septica,472695,opportunistic,blood,stool,putative,,,"Brady, Carrie L., et al. ""Emended description of the genus Pantoea, description of four species from human clinical samples, Pantoea septica sp. nov., Pantoea eucrina sp. nov., Pantoea brenneri sp. nov. and Pantoea conspicua sp. nov., and transfer of Pectobacterium cypripedii (Hori 1911) Brenner et al. 1973 emend. Hauben et al. 1998 to the genus as Pantoea cypripedii comb. nov.""International journal of systematic and evolutionary microbiology60.10 (2010): 2430-2440.", Leptospira mayottensis,1137606,primary,blood,,established,leptosis,,"Bourhy, Pascale, et al. ""Leptospira mayottensis sp. nov., a pathogenic species of the genus Leptospira isolated from humans.""International journal of systematic and evolutionary microbiology64.Pt 12 (2014): 4061.", Campylobacter armoricus,2505970,potential,stool,,established,,,"Boukerb, Amine M., et al. ""Campylobacter armoricus sp. nov., a novel member of the Campylobacter lari group isolated from surface water and stools from humans with enteric infection."" International journal of systematic and evolutionary microbiology 69.12 (2019): 3969-3979.", -Leuconostoc mesenteroides,1245,potential,"blood, urine",,established,,,"Bou, German, et al. ""Nosocomial outbreaks caused by Leuconostoc mesenteroides subsp. mesenteroides.""Emerging Infectious Diseases14.6 (2008): 968.", +Leuconostoc mesenteroides,1245,potential,"blood, urine",,established,,,"Bou, German, et al. ""Nosocomial outbreaks caused by Leuconostoc mesenteroides subsp. mesenteroides.""ÊEmerging Infectious DiseasesÊ14.6 (2008): 968.", Turicibacter sanguinis,154288,commensal,blood,"gut, stool",putative,,,"Bosshard, Philipp P., Reinhard Zbinden, and Martin Altwegg. ""Turicibacter sanguinis gen. nov., sp. nov., a novel anaerobic, Gram-positive bacterium.""International journal of systematic and evolutionary microbiology52.4 (2002): 1263-1266.", Paenibacillus turicensis,160487,potential,blood,,established,,,"Bosshard, Philipp P., Reinhard Zbinden, and Martin Altwegg. ""Paenibacillus turicensis sp. nov., a novel bacterium harbouring heterogeneities between 16S rRNA genes."" International Journal of Systematic and Evolutionary Microbiology 52.6 (2002): 2241-2249.", Clostridium ventriculi,2548455,opportunistic,"blood, gut",,established,,,"Bortolotti, Perrine, et al. ""Clostridium ventriculi bacteremia following acute colonic pseudo-obstruction: a case report.""Anaerobe59 (2019): 32-34.", @@ -1493,11 +1493,11 @@ Actinomadura meyerae,240840,potential,blood,,putative,,,"Bonnet, Emilie, et al. Mycoplasma felis,33923,opportunistic,blood,,putative,feline infectious anemia,feline,"Bonilla, Hector F., et al. ""Mycoplasma felis septic arthritis in a patient with hypogammaglobulinemia.""Clinical infectious diseases24.2 (1997): 222-225.", Actinomadura madurae,1993,opportunistic,"abscess, blood, skin",,established,,,"Bonifaz, Alexandro, et al. ""Actinomycetoma by Actinomadura madurae. Clinical and therapeutic characteristics of 18 cases with two treatment modalities.""Journal of Dermatological Treatment(2020): 1-5.", Serratia fonticola,47917,potential,"abscess, blood, resp, skin ",,established,,,"Bollet, C., et al. ""Serratia fonticola isolated from a leg abscess.""Journal of clinical microbiology29.4 (1991): 834-835.", -Burkholderia multivorans,87883,opportunistic,"blood, resp",,established,,,"Blackburn, L., et al. ""Cepacia syndrome with Burkholderia multivorans, 9 years after initial colonization.""Journal of Cystic Fibrosis3.2 (2004): 133-134.", +Burkholderia multivorans,87883,opportunistic,"blood, resp",,established,,,"Blackburn, L., et al. ""Cepacia syndrome with Burkholderia multivorans, 9 years after initial colonization.""ÊJournal of Cystic FibrosisÊ3.2 (2004): 133-134.", Acetobacter indonesiensis,104101,opportunistic,"blood, resp",,established,,,"Bittar, Fadi, et al. ""Acetobacter indonesiensis pneumonia after lung transplant.""Emerging infectious diseases14.6 (2008): 997.", Paraclostridium bifermentans,1490,opportunistic,stool,stool,established,,,"Biswas, Rakhi, et al. ""Brain abscess and cervical lymphadenitis due to Paraclostridium bifermentans: A report of two cases.""Anaerobe51 (2018): 8-11.", Peptoniphilus lacydonensis,1673725,potential,sinus,,putative,,,"Beye, Mamadou, et al. ""Peptoniphilus lacydonensis sp. nov., a new human-associated species isolated from a patient with chronic refractory sinusitis.""New microbes and new infections23 (2018): 61-69.", -Nocardia takedensis,1206735,opportunistic,"blood, resp, skin",,established,,,"Betran, A., et al. ""First Spanish case of nocardiosis caused by Nocardia takedensis.""Journal of Clinical Microbiology47.6 (2009): 1918-1919.", +Nocardia takedensis,1206735,opportunistic,"blood, resp, skin",,established,,,"Betran, A., et al. ""First Spanish case of nocardiosis caused by Nocardia takedensis.""ÊJournal of Clinical MicrobiologyÊ47.6 (2009): 1918-1919.", Clostridium neonatale,137838,potential,"blood,stool",,established,necrotizing enterocolitis,,"Bernard, Kathryn, et al. ""Clostridium neonatale sp. nov. linked to necrotizing enterocolitis in neonates and a clarification of species assignable to the genus Clostridium (Prazmowski 1880) emend. Lawson and Rainey 2016.""International journal of systematic and evolutionary microbiology68.8 (2018): 2416-2423.", Pseudoxanthomonas winnipegensis,2480810,potential,nasal,,established,,,"Bernard, Kathryn A., et al. ""Pseudoxanthomonas winnipegensis sp. nov., derived from human clinical materials and recovered from cystic fibrosis and other patient types in Canada, and emendation of Pseudoxanthomonas spadix Young et al. 2007.""International Journal of Systematic and Evolutionary Microbiology70.12 (2020): 6313-6322.", Eikenella halliae,1795832,potential,"abscess, blood",,putative,,,"Bernard, Kathryn A., et al. ""Description of Eikenella halliae sp. nov. and Eikenella longinqua sp. nov., derived from human clinical materials, emendation of Eikenella exigua Stormo et al. 2019 and emendation of the genus Eikenella to include species which are strict anaerobes.""International journal of systematic and evolutionary microbiology70.5 (2020): 3167-3178.", @@ -1521,7 +1521,7 @@ Staphylococcus cohnii,29382,commensal,"blood, urine",skin,established,,,"Basagli Brevibacterium luteolum,199591,commensal,blood,skin,putative,,,"Barton, Cassie, et al. ""687: BREVIBACTERIUM LUTEOLUM BACTEREMIA AFTER OPEN CALCANEAL FRACTURE IN AN IMMUNOCOMPETENT PATIENT.""Critical Care Medicine46.1 (2018): 330.", Ignatzschineria indica,472583,potential,blood,,established,,,"Barker, Heather S., et al. ""First case reports of Ignatzschineria (Schineria) indica associated with myiasis.""Journal of clinical microbiology52.12 (2014): 4432-4434.", Mycoplasma orale,2121,opportunistic,abscess,oral,established,,,"Barile, Michael F., et al. ""Isolation of Mycoplasma orale from leukemic bone marrow and blood by direct culture.""Journal of the National Cancer Institute36.1 (1966): 155-159.", -Neisseria subflava,28449,commensal,blood,"nasal, resp",established,,,"Baraldes, Maria A., et al. ""Meningitis due to Neisseria subflava: case report and review.""Clinical infectious diseases30.3 (2000): 615-617.", +Neisseria subflava,28449,commensal,blood,"nasal, resp",established,,,"Baraldes, Maria A., et al. ""Meningitis due to Neisseria subflava: case report and review.""ÊClinical infectious diseasesÊ30.3 (2000): 615-617.", Sphingobacterium multivorum,28454,potential,blood,,established,,,"Barahona, F., and J. Slim. ""Sphingobacterium multivorum: case report and literature review.""New microbes and new infections7 (2015): 33-36.", Mycoplasma salivarium,2124,commensal,"abscess, blood",oral,established,,,"Baracaldo, Rafael, et al. ""Empyema caused by Mycoplasma salivarium.""Journal of clinical microbiology50.5 (2012): 1805-1806.", Actinobaculum schaalii,59505,commensal,urine,"skin, genitourinary tract",established,,,"Bank, Steffen, et al. ""Actinobaculum schaalii, a common uropathogen in elderly patients, Denmark.""Emerging infectious diseases16.1 (2010): 76.", @@ -1542,8 +1542,8 @@ Anaplasma platys,949,opportunistic,blood,,putative,,tick,"Arraga-Alvarado, Cruz Veillonella rogosae,423477,commensal,,oral,established,,,"Arif, Nausheen, et al. ""Veillonella rogosae sp. nov., an anaerobic, Gram-negative coccus isolated from dental plaque.""International journal of systematic and evolutionary microbiology58.Pt 3 (2008): 581.", Streptococcus pseudopneumoniae,257758,primary,"resp, sputum",,established,,,"Arbique, Judy C., et al. ""Accuracy of phenotypic and genotypic testing for identification of Streptococcus pneumoniae and description of Streptococcus pseudopneumoniae sp. nov.""Journal of Clinical Microbiology42.10 (2004): 4686-4696.", Corynebacterium pilbarense,1288393,potential,blood,,putative,,,"Aravena-Roman, M., et al. ""Corynebacterium pilbarense sp. nov., a non-lipophilic corynebacterium isolated from a human ankle aspirate.""International journal of systematic and evolutionary microbiology60.7 (2010): 1484-1487.", -Canibacter oris,1365628,potential,"blood, skin",,putative,,dog,"Aravena-Roman, M., et al. ""Canibacter oris gen. nov., sp. nov., isolated from an infected human wound.""International Journal of Systematic and Evolutionary Microbiology64.Pt_5 (2014): 1635-1640.", -Brevibacterium iodinum,31943,commensal,blood,skin,putative,,,"Antoniou, S., et al. ""Brevibacterium iodinum peritonitis associated with acute urticaria in a CAPD patient.""Peritoneal Dialysis International17.6 (1997): 614-615.", +Canibacter oris,1365628,potential,"blood, skin",,putative,,dog,"Aravena-Roman, M., et al. ""Canibacter oris gen. nov., sp. nov., isolated from an infected human wound.""ÊInternational Journal of Systematic and Evolutionary MicrobiologyÊ64.Pt_5 (2014): 1635-1640.", +Brevibacterium iodinum,31943,commensal,blood,skin,putative,,,"Antoniou, S., et al. ""Brevibacterium iodinum peritonitis associated with acute urticaria in a CAPD patient.""ÊPeritoneal Dialysis InternationalÊ17.6 (1997): 614-615.", Tannerella serpentiformis,712710,potential,oral,,putative,,,"Ansbro, Katherine, William G. Wade, and Graham P. Stafford. ""Tannerella serpentiformis sp. nov., isolated from the human mouth.""International Journal of Systematic and Evolutionary Microbiology70.6 (2020): 3749-3754.", Atopobium rimae,1383,commensal,blood,oral,established,,,"Angelakis, Emmanouil, et al. ""Human case of Atopobium rimae bacteremia.""Emerging infectious diseases15.2 (2009): 354.", Corynebacterium accolens,38284,commensal,abscess,skin,established,,,"Ang, Lei MN, and Hamish Brown. ""Corynebacterium accolens isolated from breast abscess: possible association with granulomatous mastitis.""Journal of clinical microbiology45.5 (2007): 1666-1668.", @@ -1556,20 +1556,20 @@ Comamonas kerstersii,225992,opportunistic,blood,gut,established,,,"Almuzara, Mar Moellerella wisconsensis,158849,potential,blood,stool,established,,,"Aller, A. I., et al. ""Isolation of Moellerella wisconsensis from blood culture from a patient with acute cholecystitis.""Clinical Microbiology and Infection15.12 (2009): 1193-1194.", Mycobacterium mungi,1844474,potential,,,established,,mongoose,"Alexander, Kathleen A., et al. ""Novel Mycobacterium tuberculosis complex pathogen, M. mungi.""Emerging infectious diseases16.8 (2010): 1296.", Streptococcus pasteurianus,197614,opportunistic,"abscess, blood",gut,putative,,,"Alex, D., D. F. Garvin, and S. M. Peters. ""Streptococcus pasteurianus septicemia.""Indian journal of medical microbiology31.3 (2013): 310.", -Roseomonas gilardii,257708,opportunistic,blood,,established,,,"Alcala, L., et al. ""Catheter-related bacteremia due to Roseomonas gilardii sp. nov.""Journal of clinical microbiology35.10 (1997): 2712.", +Roseomonas gilardii,257708,opportunistic,blood,,established,,,"Alcala, L., et al. ""Catheter-related bacteremia due to Roseomonas gilardii sp. nov.""ÊJournal of clinical microbiologyÊ35.10 (1997): 2712.", Prevotella nanceiensis,425941,commensal,,"oral, gut, sputum, urine",established,,,"Alauzet, C., et al. ""Prevotella nanceiensis sp. nov., isolated from human clinical samples.""International journal of systematic and evolutionary microbiology57.10 (2007): 2216-2220.", Parabacteroides distasonis,823,commensal,,gut,established,,,"Al-Tawfiq, Jaffar A. ""Bacteroides (Parabacteroides) distasonis splenic abscess in a sickle cell patient.""Internal Medicine47.1 (2008): 69-72.", Phocaeicola abscessus,555313,potential,abscess,,putative,,,"Al Masalma, Mouhamad, Didier Raoult, and Veronique Roux. ""Phocaeicola abscessus gen. nov., sp. nov., an anaerobic bacterium isolated from a human brain abscess sample.""International journal of systematic and evolutionary microbiology59.9 (2009): 2232-2237.", -Staphylococcus massiliensis,555791,potential,"abscess, blood",skin,putative,,,"Al Masalma, Mouhamad, Didier Raoult, and Veronique Roux. ""Staphylococcus massiliensis sp. nov., isolated from a human brain abscess.""International journal of systematic and evolutionary microbiology60.5 (2010): 1066-1072.", +Staphylococcus massiliensis,555791,potential,"abscess, blood",skin,putative,,,"Al Masalma, Mouhamad, Didier Raoult, and Veronique Roux. ""Staphylococcus massiliensis sp. nov., isolated from a human brain abscess.""ÊInternational journal of systematic and evolutionary microbiologyÊ60.5 (2010): 1066-1072.", Desulfovibrio vulgaris,885,commensal,,gut,putative,,,"Akshatha, R., et al. ""Uncommon isolation of Desulfovibrio vulgaris from a depressed fracture wound on the forehead.""Anaerobe65 (2020): 102264.", Streptomyces cacaoi,1898,potential,"abscess, ear",,putative,,,"Ai, Lu, et al. ""Chronic suppurative otitis media due to Streptomyces cacaoi, the second case report in human infection.""BMC Infectious Diseases20.1 (2020): 1-4.", Clostridium celatum,36834,commensal,,feces,putative,,,"Agergaard, Charlotte Nielsen, et al. ""Two serious cases of infection with Clostridium celatum after 40 years in hiding?.""Journal of clinical microbiology54.1 (2016): 236-238.", -Mycobacterium aubagnense,319707,potential,"blood, resp",,putative,,,"Adekambi, Toi_di, et al. ""Description of Mycobacterium conceptionense sp. nov., a Mycobacterium fortuitum group organism isolated from a posttraumatic osteitis inflammation.""Journal of clinical microbiology44.4 (2006): 1268-1273.", -Mycobacterium phocaicum,319706,opportunistic,"blood, resp",,established,,,"Adekambi, Toi_di, et al. ""Description of Mycobacterium conceptionense sp. nov., a Mycobacterium fortuitum group organism isolated from a posttraumatic osteitis inflammation.""Journal of clinical microbiology44.4 (2006): 1268-1273.", -Mycobacterium conceptionense,451644,opportunistic,"abscess, blood, sputum",,established,,,"Adekambi, Toi_di, et al. ""Description of Mycobacterium conceptionense sp. nov., a Mycobacterium fortuitum group organism isolated from a posttraumatic osteitis inflammation.""Journal of clinical microbiology44.4 (2006): 1268-1273.", +Mycobacterium aubagnense,319707,potential,"blood, resp",,putative,,,"Adekambi, Toi_di, et al. ""Description of Mycobacterium conceptionense sp. nov., a Mycobacterium fortuitum group organism isolated from a posttraumatic osteitis inflammation.""ÊJournal of clinical microbiologyÊ44.4 (2006): 1268-1273.", +Mycobacterium phocaicum,319706,opportunistic,"blood, resp",,established,,,"Adekambi, Toi_di, et al. ""Description of Mycobacterium conceptionense sp. nov., a Mycobacterium fortuitum group organism isolated from a posttraumatic osteitis inflammation.""ÊJournal of clinical microbiologyÊ44.4 (2006): 1268-1273.", +Mycobacterium conceptionense,451644,opportunistic,"abscess, blood, sputum",,established,,,"Adekambi, Toi_di, et al. ""Description of Mycobacterium conceptionense sp. nov., a Mycobacterium fortuitum group organism isolated from a posttraumatic osteitis inflammation.""ÊJournal of clinical microbiologyÊ44.4 (2006): 1268-1273.", Mycobacterium chimaera,222805,opportunistic,resp,,established,,,"Achermann, Yvonne, et al. ""Prosthetic valve endocarditis and bloodstream infection due to Mycobacterium chimaera.""Journal of clinical microbiology51.6 (2013): 1769-1773.", Mycobacterium heraklionense,1785,primary,"skin, sputum, urine",,established,,,"Aburjania, Nana, et al. ""Chronic tenosynovitis of the hand caused by Mycobacterium heraklionense.""International journal of mycobacteriology5.3 (2016): 273-275.", -Hungatella effluvii,1096246,commensal,blood,gut,putative,,,"Cuha, Mervenur Demir, et al. ""A rare case of necrotizing fasciitis of the abdominal wall due to Hungatella effluvii and Streptococcus constellatus.""Anaerobe70 (2021): 102409.", +Hungatella effluvii,1096246,commensal,blood,gut,putative,,,"Cuha, Mervenur Demir, et al. ""A rare case of necrotizing fasciitis of the abdominal wall due to Hungatella effluvii and Streptococcus constellatus.""ÊAnaerobeÊ70 (2021): 102409.", Sin Nombre orthohantavirus,3052499,primary,,,established,,,"National Institute of Allergy and Infectious Diseases. ""Emerging Infectious Diseases Pathogens."" National Institute of Allergy and Infectious Diseases, Date of Publication (if available), URL: https://www.niaid.nih.gov/research/emerging-infectious-diseases-pathogens.", New York orthohantavirus,44755,primary,,,established,,,"National Institute of Allergy and Infectious Diseases. ""Emerging Infectious Diseases Pathogens."" National Institute of Allergy and Infectious Diseases, Date of Publication (if available), URL: https://www.niaid.nih.gov/research/emerging-infectious-diseases-pathogens.", Bayou orthohantavirus,3052470,primary,,,established,,,"National Institute of Allergy and Infectious Diseases. ""Emerging Infectious Diseases Pathogens."" National Institute of Allergy and Infectious Diseases, Date of Publication (if available), URL: https://www.niaid.nih.gov/research/emerging-infectious-diseases-pathogens.", @@ -1614,148 +1614,148 @@ Human alphaherpesvirus 2,10310,primary,,,established,,,"National Institute of Al human papillomavirus,931209,primary,,,established,,,"National Institute of Allergy and Infectious Diseases. ""Emerging Infectious Diseases Pathogens."" National Institute of Allergy and Infectious Diseases, Date of Publication (if available), URL: https://www.niaid.nih.gov/research/emerging-infectious-diseases-pathogens.", Human immunodeficiency virus 1,11676,primary,,,established,,,"National Institute of Allergy and Infectious Diseases. ""Emerging Infectious Diseases Pathogens."" National Institute of Allergy and Infectious Diseases, Date of Publication (if available), URL: https://www.niaid.nih.gov/research/emerging-infectious-diseases-pathogens.", Human immunodeficiency virus 2,11709,primary,,,established,,,"National Institute of Allergy and Infectious Diseases. ""Emerging Infectious Diseases Pathogens."" National Institute of Allergy and Infectious Diseases, Date of Publication (if available), URL: https://www.niaid.nih.gov/research/emerging-infectious-diseases-pathogens.", -Bifidobacterium longum,216816,commensal,,gut,established,,,"Rinninella, Emanuele, et al. ""What is the healthy gut microbiota composition? A changing ecosystem across age, environment, diet, and diseases.""Microorganisms7.1 (2019): 14.", -Bifidobacterium bifidum,1681,commensal,,gut,established,,,"Rinninella, Emanuele, et al. ""What is the healthy gut microbiota composition? A changing ecosystem across age, environment, diet, and diseases.""Microorganisms7.1 (2019): 14.", +Bifidobacterium longum,216816,commensal,,gut,established,,,"Rinninella, Emanuele, et al. ""What is the healthy gut microbiota composition? A changing ecosystem across age, environment, diet, and diseases.""ÊMicroorganismsÊ7.1 (2019): 14.", +Bifidobacterium bifidum,1681,commensal,,gut,established,,,"Rinninella, Emanuele, et al. ""What is the healthy gut microbiota composition? A changing ecosystem across age, environment, diet, and diseases.""ÊMicroorganismsÊ7.1 (2019): 14.", human respiratory syncytial virus,11250,primary,,,established,,,"Centers for Disease Control and Prevention. ""Respiratory Syncytial Virus (RSV)."" Centers for Disease Control and Prevention, www.cdc.gov/rsv/index.html.", Respiratory syncytial virus A,11250,primary,,,established,,,"Centers for Disease Control and Prevention. ""Respiratory Syncytial Virus (RSV)."" Centers for Disease Control and Prevention, www.cdc.gov/rsv/index.html.", Respiratory syncytial virus B,208895,primary,,,established,,,"Centers for Disease Control and Prevention. ""Respiratory Syncytial Virus (RSV)."" Centers for Disease Control and Prevention, www.cdc.gov/rsv/index.html.", Respiratory syncytial virus A,12814,primary,,,established,,,"Centers for Disease Control and Prevention. ""Respiratory Syncytial Virus (RSV)."" Centers for Disease Control and Prevention, www.cdc.gov/rsv/index.html.", Respiratory syncytial virus B,11250,primary,,,established,,,"Centers for Disease Control and Prevention. ""Respiratory Syncytial Virus (RSV)."" Centers for Disease Control and Prevention, www.cdc.gov/rsv/index.html.", -Aichivirus A,72149,primary,,,established,,,"Rivadulla, Enrique, and Jess L. Romalde. ""A comprehensive review on human Aichi virus.""Virologica Sinica35.5 (2020): 501-516.", -Akhmeta virus,2200830,primary,,,established,,,"Vora, Neil M., et al. ""Human infection with a zoonotic orthopoxvirus in the country of Georgia.""New England Journal of Medicine372.13 (2015): 1223-1230.", -Alphapapillomavirus 4,337043,primary,,,established,,,"Zur Hausen, Harald, and Ethel-Michele De Villiers. ""Human papillomaviruses.""Annual review of microbiology48.1 (1994): 427-447.", -Alphapapillomavirus 7,337042,primary,,,established,,,"Zur Hausen, Harald, and Ethel-Michele De Villiers. ""Human papillomaviruses.""Annual review of microbiology48.1 (1994): 427-447.", -Alphapapillomavirus 9,337041,primary,,,established,,,"Zur Hausen, Harald, and Ethel-Michele De Villiers. ""Human papillomaviruses.""Annual review of microbiology48.1 (1994): 427-447.", -Orthohantavirus andesens,1980456,primary,,,established,,,"Martinez, Valeria P., et al. ""Person-to-person transmission of Andes virus.""Emerging infectious diseases11.12 (2005): 1848.", -Lyssavirus australis,90961,primary,,,established,,,"Francis, Joshua R., et al. ""Australian bat lyssavirus: implications for public health.""The Medical journal of Australia201.11 (2014): 647-649.", -avian paramyxovirus 1,2560319,primary,,,established,,,"Ul_Rahman, Aziz, et al. ""Zoonotic potential of Newcastle disease virus: Old and novel perspectives related to public health.""Reviews in medical Virology32.1 (2022): e2246.", -Banna virus,77763,primary,,,putative,,,"Xu, PuTing, et al. ""New arboviruses isolated from patients with unknown fever and encephalitis in Yunnan Province.""Chinese Journal of Virology6.1 (1990): 27-33.", -Barmah Forest virus,11020,primary,,,established,,,"Lindsay, M., et al. ""Emergence of Barmah Forest virus in Western Australia.""Emerging infectious diseases1.1 (1995): 22.", -Bandavirus bhanjanagarense,3051989,primary,,,established,,,"Vilibic-Cavlek, Tatjana, et al. ""Detection of Bhanja Bandavirus in patients with neuroinvasive disease of unknown etiology in Croatia.""Microorganisms11.9 (2023): 2155.", -Orthohantavirus nigrorivense,3052490,primary,,,putative,,,"Zaki, SherifR, et al. ""Retrospective diagnosis of a 1983 case of fatal hantavirus pulmonary syndrome.""The Lancet343.8904 (1994): 1037-1038.", -Borna disease virus,12455,primary,,,putative,,,"Carbone, Kathryn M. ""Borna disease virus and human disease.""Clinical microbiology reviews14.3 (2001): 513-527.", -Bourbon virus,1618189,primary,,,established,,,"Bamunuarachchi, Gayan, et al. ""Detection of Bourbon virus-specific serum neutralizing antibodies in human serum in Missouri, USA.""Msphere7.3 (2022): e00164-22.", -Bufavirus-1,1209382,primary,,,established,,,"Huang, Dou-Dou, et al. ""Identification of bufavirus-1 and bufavirus-3 in feces of patients with acute diarrhea, China.""Scientific Reports5.1 (2015): 13272.", -Bufavirus-3,1391667,primary,,,established,,,"Huang, Dou-Dou, et al. ""Identification of bufavirus-1 and bufavirus-3 in feces of patients with acute diarrhea, China.""Scientific Reports5.1 (2015): 13272.", -Orthobunyavirus bunyamweraense,3052381,primary,,,established,,,"Granoff, Allan, and Robert G. Webster, eds.Encyclopedia of virology. Elsevier, 1999.", -Orthobunyavirus bwambaense,3052384,primary,,,established,,,"Lutwama, Julius J., et al. ""Isolations of Bwamba virus from south central Uganda and north eastern Tanzania.""African health sciences2.1 (2002): 24-28.", -Orthobunyavirus cacheense,3052385,primary,,,established,,,"Waddell, Lisa, et al. ""Cache Valley virus: A scoping review of the global evidence.""Zoonoses and public health66.7 (2019): 739-758.", -Orthobunyavirus encephalitidis,3052390,primary,,,established,,,"Rust, Robert S., et al. ""Topical review: La Crosse and other forms of California encephalitis.""Journal of child neurology14.1 (1999): 1-14.", -Cardiovirus A,1821749,primary,,,putative,,,"Oberste, M. Steven, et al. ""Human febrile illness caused by encephalomyocarditis virus infection, Peru.""Emerging infectious diseases15.4 (2009): 640.", -Vesiculovirus chandipura,1972576,primary,,,established,,,"Menghani, Sunil, et al. ""Chandipura virus: an emerging tropical pathogen.""Acta tropica124.1 (2012): 1-14.", -Colorado tick fever coltivirus,2748762,primary,,,established,,,"Harris, Emma K., Brian D. Foy, and Gregory D. Ebel. ""Colorado tick fever virus: a review of historical literature and research emphasis for a modern era.""Journal of Medical Entomology60.6 (2023): 1214-1220.", -Orthonairovirus haemorrhagiae,3052518,primary,,,established,,,"Ergonul, Onder. ""Crimean-Congo haemorrhagic fever.""The Lancet infectious diseases6.4 (2006): 203-214.", -Thogotovirus dhoriense,11318,primary,,,established,,,"Lled, Lourdes, Consuelo Gimnez-Pardo, and Mara Isabel Gegndez. ""Epidemiological study of Thogoto and Dhori virus infection in people bitten by ticks, and in sheep, in an area of Northern Spain.""International Journal of Environmental Research and Public Health17.7 (2020): 2254.", -Orthohantavirus dobravaense,3052477,primary,,,established,,,"Papa, Anna. ""Dobrava-Belgrade virus: phylogeny, epidemiology, disease.""Antiviral Research95.2 (2012): 104-117.", -Lyssavirus duvenhage,38767,primary,,,putative,,,"Paweska, Janusz T., et al. ""Fatal human infection with rabies-related Duvenhage virus, South Africa.""Emerging Infectious Diseases12.12 (2006): 1965.", -Eastern equine encephalitis virus,11021,primary,,,established,,,"Corrin, Tricia, et al. ""Eastern equine encephalitis virus: a scoping review of the global evidence.""Vector-Borne and Zoonotic Diseases21.5 (2021): 305-320.", -Enterovirus A,138948,primary,,,established,,,"Khetsuriani, Nino, et al. ""Enterovirus surveillanceUnited States, 19702005.""MMWR Surveill Summ55.8 (2006): 1-20.", -Enterovirus B,138949,primary,,,established,,,"Khetsuriani, Nino, et al. ""Enterovirus surveillanceUnited States, 19702005.""MMWR Surveill Summ55.8 (2006): 1-20.", -Enterovirus C,138950,primary,,,established,,,"Khetsuriani, Nino, et al. ""Enterovirus surveillanceUnited States, 19702005.""MMWR Surveill Summ55.8 (2006): 1-20.", -Enterovirus D,138951,primary,,,established,,,"Khetsuriani, Nino, et al. ""Enterovirus surveillanceUnited States, 19702005.""MMWR Surveill Summ55.8 (2006): 1-20.", -European bat lyssavirus,38768,primary,,,putative,,,"Regnault, Batrice, et al. ""First case of lethal encephalitis in Western Europe due to European bat lyssavirus type 1.""Clinical Infectious Diseases74.3 (2022): 461-466.", -Everglades virus,2083198,primary,,,established,,,"Burkett-Cadena, Nathan D., et al. ""Everglades virus: an underrecognized disease-causing subtype of Venezuelan equine encephalitis virus endemic to Florida, USA.""Journal of medical entomology60.6 (2023): 1149-1164.", -Mammarenavirus guanaritoense,3052307,primary,,,established,,,"Silva-Ramos, Carlos Ramiro, et al. ""An updated review and current challenges of Guanarito virus infection, Venezuelan hemorrhagic fever.""Archives of Virology167.9 (2022): 1727-1738.", -Orthobunyavirus guaroaense,3052397,primary,,,established,,,"Aguilar, Patricia V., et al. ""Guaroa virus infection among humans in Bolivia and Peru.""The American journal of tropical medicine and hygiene83.3 (2010): 714.", -Orthohantavirus hantanense,3052480,primary,,,established,,,"Lee, Ho Wang. ""Hemorrhagic fever with renal syndrome in Korea.""Reviews of infectious diseases11.Supplement_4 (1989): S846-S876.", -Bandavirus heartlandense,3051992,primary,,,established,,,"Esguerra, Eden M. ""Heartland virus: a new virus discovered in Missouri.""Missouri Medicine113.4 (2016): 256.", -Hepatitis delta virus,12475,opportunistic,,,established,,,"Rizzetto, Mario. ""Hepatitis D virus: introduction and epidemiology.""Cold Spring Harbor perspectives in medicine5.7 (2015): a021576.", -Human mastadenovirus A,129875,primary,,,established,,,"Mennechet, Franck JD, et al. ""A review of 65 years of human adenovirus seroprevalence.""Expert review of vaccines18.6 (2019): 597-613.", -Human mastadenovirus B,108098,primary,,,established,,,"Mennechet, Franck JD, et al. ""A review of 65 years of human adenovirus seroprevalence.""Expert review of vaccines18.6 (2019): 597-613.", -Human mastadenovirus C,129951,primary,,,established,,,"Mennechet, Franck JD, et al. ""A review of 65 years of human adenovirus seroprevalence.""Expert review of vaccines18.6 (2019): 597-613.", -Human mastadenovirus D,130310,primary,,,established,,,"Mennechet, Franck JD, et al. ""A review of 65 years of human adenovirus seroprevalence.""Expert review of vaccines18.6 (2019): 597-613.", -Human mastadenovirus E,130308,primary,,,established,,,"Mennechet, Franck JD, et al. ""A review of 65 years of human adenovirus seroprevalence.""Expert review of vaccines18.6 (2019): 597-613.", -Human mastadenovirus F,130309,primary,,,established,,,"Mennechet, Franck JD, et al. ""A review of 65 years of human adenovirus seroprevalence.""Expert review of vaccines18.6 (2019): 597-613.", -Human mastadenovirus G,536079,primary,,,established,,,"Mennechet, Franck JD, et al. ""A review of 65 years of human adenovirus seroprevalence.""Expert review of vaccines18.6 (2019): 597-613.", -Human astrovirus,1868658,primary,,,established,,,"Guix, S., A. Bosch, and R. M. Pinto. ""Human astrovirus diagnosis and typing: current and future prospects.""Letters in applied microbiology41.2 (2005): 103-105.", -Human bocavirus,329641,primary,,,established,,,"Guido, Marcello, et al. ""Human bocavirus: current knowledge and future challenges.""World journal of gastroenterology22.39 (2016): 8684.", -Human betaherpesvirus 5,10359,primary,,,established,,,"Ho, Monto.Cytomegalovirus: biology and infection. Springer Science & Business Media, 2013.", -Human betaherpesvirus 6B,32604,primary,,,established,,,"Braun, Daniel K., Geraldina Dominguez, and Philip E. Pellett. ""Human herpesvirus 6.""Clinical microbiology reviews10.3 (1997): 521-567.", -Human coronavirus 229E,11137,primary,,,established,,,"Gaunt, Eleanor R., et al. ""Epidemiology and clinical presentations of the four human coronaviruses 229E, HKU1, NL63, and OC43 detected over 3 years using a novel multiplex real-time PCR method.""Journal of clinical microbiology48.8 (2010): 2940-2947.", -Human coronavirus HKU1,290028,primary,,,established,,,"Gaunt, Eleanor R., et al. ""Epidemiology and clinical presentations of the four human coronaviruses 229E, HKU1, NL63, and OC43 detected over 3 years using a novel multiplex real-time PCR method.""Journal of clinical microbiology48.8 (2010): 2940-2947.", -Human coronavirus OC43,31631,primary,,,established,,,"Gaunt, Eleanor R., et al. ""Epidemiology and clinical presentations of the four human coronaviruses 229E, HKU1, NL63, and OC43 detected over 3 years using a novel multiplex real-time PCR method.""Journal of clinical microbiology48.8 (2010): 2940-2947.", -Human coronavirus NL63,277944,primary,,,established,,,"Gaunt, Eleanor R., et al. ""Epidemiology and clinical presentations of the four human coronaviruses 229E, HKU1, NL63, and OC43 detected over 3 years using a novel multiplex real-time PCR method.""Journal of clinical microbiology48.8 (2010): 2940-2947.", -Human gammaherpesvirus 4,10376,primary,,,established,,,"Kuri, Ashvin, et al. ""Epidemiology of Epstein-Barr virus infection and infectious mononucleosis in the United Kingdom.""BMC public health20 (2020): 1-9.", -Human gammaherpesvirus 8,37296,primary,,,established,,,"Dukers, Nicole HTM, and Giovanni Rezza. ""Human herpesvirus 8 epidemiology: what we do and do not know.""Aids17.12 (2003): 1717-1730.", -Human metapneumovirus,162145,primary,,,established,,,"Kahn, Jeffrey S. ""Epidemiology of human metapneumovirus.""Clinical microbiology reviews19.3 (2006): 546-557.", -Human rubulavirus 2,2560525,primary,,,established,,,"DeGroote, Nicholas P., et al. ""Human parainfluenza virus circulation, United States, 20112019.""Journal of Clinical Virology124 (2020): 104261.", -Human orthorubulavirus 4,2560526,primary,,,established,,,"Yea, Carmen, et al. ""The complete sequence of a human parainfluenzavirus 4 genome.""Viruses1.1 (2009): 26-41.", -Betapolyomavirus hominis,1891762,primary,,,established,,,"Boothpur, Raghavender, and Daniel C. Brennan. ""Human polyoma viruses and disease with emphasis on clinical BK and JC.""Journal of Clinical Virology47.4 (2010): 306-312.", -Deltapolyomavirus decihominis,1208309,primary,,,established,,,"Nicol, Jrme TJ, et al. ""Seroprevalence of human Malawi polyomavirus.""Journal of clinical microbiology52.1 (2014): 321-323.", -Betapolyomavirus secuhominis,1891763,primary,,,established,,,"Boothpur, Raghavender, and Daniel C. Brennan. ""Human polyoma viruses and disease with emphasis on clinical BK and JC.""Journal of Clinical Virology47.4 (2010): 306-312.", -"Betapolyomavirus quartihominis,",1891765,primary,,,established,,,"Boothpur, Raghavender, and Daniel C. Brennan. ""Human polyoma viruses and disease with emphasis on clinical BK and JC.""Journal of Clinical Virology47.4 (2010): 306-312.", -Alphapolyomavirus quintihominis,1891726,primary,,,established,,,"Boothpur, Raghavender, and Daniel C. Brennan. ""Human polyoma viruses and disease with emphasis on clinical BK and JC.""Journal of Clinical Virology47.4 (2010): 306-312.", -Alphapolyomavirus octihominis,1891727,opportunistic,,,established,,,"Haycox, Claire L., et al. ""Trichodysplasia spinulosaa newly described folliculocentric viral infection in an immunocompromised host.""Journal of Investigative Dermatology Symposium Proceedings. Vol. 4. No. 3. Elsevier, 1999.", -Human respirovirus 1,12730,primary,,,established,,,"Liu, Wen-Kuan, et al. ""Epidemiology and clinical presentation of the four human parainfluenza virus types.""BMC infectious diseases13 (2013): 1-8.", -Human respirovirus 3,11216,primary,,,established,,,"Liu, Wen-Kuan, et al. ""Epidemiology and clinical presentation of the four human parainfluenza virus types.""BMC infectious diseases13 (2013): 1-8.", -Rhinovirus A,147711,primary,,,established,,,"Jacobs, Samantha E., et al. ""Human rhinoviruses.""Clinical microbiology reviews26.1 (2013): 135-162.", -Rhinovirus B,147712,primary,,,established,,,"Jacobs, Samantha E., et al. ""Human rhinoviruses.""Clinical microbiology reviews26.1 (2013): 135-162.", -Rhinovirus C,463676,primary,,,established,,,"Jacobs, Samantha E., et al. ""Human rhinoviruses.""Clinical microbiology reviews26.1 (2013): 135-162.", -unclassified Rhinovirus,348531,primary,,,established,,,"Jacobs, Samantha E., et al. ""Human rhinoviruses.""Clinical microbiology reviews26.1 (2013): 135-162.", -Human torovirus,67605,primary,,,established,,,"Duckmanton, Lynn, et al. ""Characterization of torovirus from human fecal specimens.""Virology239.1 (1997): 158-168.", -Orthobunyavirus ileshaense,3052399,primary,,,established,,,"Chippaux, A., et al. ""The isolation of 2 human strains of Ilesha virus in the Central African Republic.""Bulletin de la Societe Medicale d'Afrique Noire de Langue Francaise14.1 (1969): 88-92.", -Ilheus virus,59563,primary,,,established,,,"Venegas, Erika A., et al. ""Ilheus virus infection in human, Bolivia.""Emerging infectious diseases18.3 (2012): 516.", -Vesiculovirus isfahan,1972573,primary,,,established,,,"Tesh, R., et al. ""Isfahan virus, a new vesiculovirus infecting humans, gerbils, and sandflies in Iran.""The American journal of tropical medicine and hygiene26.2 (1977): 299-306.", -Orthobunyavirus jamestownense,3052402,primary,,,established,,,"Coleman, Kyle J., et al. ""An overview of Jamestown Canyon virus disease.""The Neurohospitalist11.3 (2021): 277-278.", -Orthobunyavirus lacrosseense,3052409,primary,,,established,,,"Edridge, Arthur Wouter Dante, and Lia van der Hoek. ""Emerging orthobunyaviruses associated with CNS disease.""PLoS neglected tropical diseases14.10 (2020): e0008856.", -Louping ill virus,11086,primary,,,established,,,"Davidson, Marilyn M., Harry Williams, and John AJ Macleod. ""Louping ill in man: a forgotten disease.""Journal of Infection23.3 (1991): 241-249.", -Mammarenavirus choriomeningitidis,3052303,primary,,,established,,,"Mehl, Calvin, et al. ""Reemergence of lymphocytic choriomeningitis mammarenavirus, Germany.""Emerging infectious diseases29.3 (2023): 631.", -Macacine alphaherpesvirus 1,10325,primary,,,established,,,"Weigler, Benjamin J. ""Biology of B virus in macaque and human hosts: a review.""Clinical Infectious Diseases14.2 (1992): 555-567.", -Mammarenavirus machupoense,3052317,primary,,,established,,,"Patterson, Michael, Ashley Grant, and Slobodan Paessler. ""Epidemiology and pathogenesis of Bolivian hemorrhagic fever.""Current opinion in virology5 (2014): 82-90.", -Mammalian orthoreovirus,351073,primary,,,established,,,"Steyer, Andrej, et al. ""High similarity of novel orthoreovirus detected in a child hospitalized with acute gastroenteritis to mammalian orthoreoviruses found in bats in Europe.""Journal of clinical microbiology51.11 (2013): 3818-3825.", -Mammalian orthorubulavirus 5,2560580,primary,,,established,,,"Goswami, K. K. A., et al. ""Does simian virus 5 infect humans?.""Journal of General Virology65.8 (1984): 1295-1303.", -Mayaro virus,59301,primary,,,established,,,"Pinheiro, Francisco P., and James W. LeDuc. ""Mayaro virus disease.""Arboviruses. CRC Press, 2019. 137-150.", -Measles morbillivirus,11234,primary,,,established,,,"Fiebelkorn, Amy Parker, et al. ""A comparison of postelimination measles epidemiology in the United States, 20092014 versus 20012008.""Journal of the Pediatric Infectious Diseases Society6.1 (2017): 40-48.", -Middelburg virus,11023,primary,,,established,,,"Fourie, Isabel, et al. ""Detection and genome characterization of Middelburg virus strains isolated from CSF and whole blood samples of humans with neurological manifestations in South Africa.""PLoS neglected tropical diseases16.1 (2022): e0010020.", -Lyssavirus mokola,12538,primary,,,putative,,,"Familusi, J. B., and D. L. Moore. ""Isolation of a rabies related virus from the cerebrospinal fluid of a child with"" aseptic meningitis"".""Afr. J. Med. Sci.3.1 (1972): 93-6.", -Molluscum contagiosum virus,10279,primary,,,established,,,"Hebert, Adelaide A., Neal Bhatia, and James Q. Del Rosso. ""Molluscum Contagiosum: Epidemiology, Considerations, Treatment Options, and Therapeutic Gaps.""The Journal of Clinical and Aesthetic Dermatology16.8 Suppl 1 (2023): S4.", -Mucambo virus,60875,primary,,,established,,,"de Mucha-Macas, Julio, and Imelda Snchez-Spndola. ""Two human cases of laboratory infection with Mucambo virus."" (1965): 475-8.", -Mumps orthorubulavirus,2560602,primary,,,established,,,"Mourez, Thomas, and Julia Dina. ""Mumps virus: a comprehensive review.""Virologie22.4 (2018).", -Mupapillomavirus 1,334203,primary,,,established,,,"Chang, Fuju, et al. ""Human papillomavirus (HPV) infections and their associations with oral disease.""Journal of oral pathology & medicine20.7 (1991): 305-317.", -Murray Valley encephalitis virus,11079,primary,,,established,,,"Selvey, Linda A., et al. ""The changing epidemiology of Murray Valley encephalitis in Australia: the 2011 outbreak and a review of the literature.""PLoS neglected tropical diseases8.1 (2014): e2656.", -Orthonairovirus fnairobiens,3052529,primary,,,established,,,"Sudeep, A. B., R. S. Jadi, and A. C. Mishra. ""Ganjam virus.""Indian Journal of Medical Research130.5 (2009): 514-519.", -Phlebovirus napoliense,3052666,primary,,,established,,,"Nicoletti, L., M. G. Ciufolini, and P. Verani.Sandfly fever viruses in Italy. Springer Vienna, 1996.", -Norwalk virus,11983,primary,,,established,,,"Estes, Mary K., and Isabelle Leparc-Goffart. ""NORWALK AND RELATED VIRUSES (CALICIVIRIDAE).""Encyclopedia of virology(1999): 1035.", -Onyong-nyong virus,2169701,primary,,,established,,,"Rezza, Giovanni, Rubing Chen, and Scott C. Weaver. ""Onyong-nyong fever: a neglected mosquito-borne viral disease.""Pathogens and global health111.6 (2017): 271-275.", -Orthobunyavirus oropoucheense,3052429,primary,,,established,,,"Vasconcelos, Pedro FC, and Charles H. Calisher. ""Emergence of human arboviral diseases in the Americas, 20002016.""Vector-borne and zoonotic diseases16.5 (2016): 295-301.", -Paslahepevirus balayani,1678143,primary,,,established,,,"Li, Pengfei, et al. ""The global epidemiology of hepatitis E virus infection: a systematic review and meta_analysis.""Liver International40.7 (2020): 1516-1528.", -Orungo virus,40058,primary,,,established,,,"Tomori, O., and A. Fabiyi. ""Neutralizing antibodies to Orungo virus in man and animals in Nigeria.""Tropical and geographical medicine28.3 (1976): 233-238.", -Parechovirus A,1803956,primary,,,established,,,"Romero, Jos R., and Rangaraj Selvarangan. ""The human Parechoviruses: an overview.""Advances in Pediatrics58.1 (2011): 65-85.", -Parechovirus B,1803957,primary,,,established,,,"Romero, Jos R., and Rangaraj Selvarangan. ""The human Parechoviruses: an overview.""Advances in Pediatrics58.1 (2011): 65-85.", -Pegivirus hominis,3052608,primary,,,established,,,"Yu, Yaqi, et al. ""Review of human pegivirus: Prevalence, transmission, pathogenesis, and clinical implication.""Virulence13.1 (2022): 323-340.", -Powassan virus,11083,primary,,,established,,,"Hermance, Meghan E., and Saravanan Thangamani. ""Powassan virus: an emerging arbovirus of public health concern in North America.""Vector-Borne and Zoonotic Diseases17.7 (2017): 453-462.", -Erythroparvovirus primate1,3052189,primary,,,established,,,"Krumova, Stefka, et al. ""Primate Erythroparvovirus 1 Infection in Patients with Hematological Disorders.""Pathogens11.5 (2022): 497.", -Phlebovirus toroense,3052684,primary,,,established,,,"Gundacker, Nathan D., et al. ""Clinical manifestations of Punta Toro virus species complex infections, Panama, 2009.""Emerging infectious diseases23.5 (2017): 872.", -Orthohantavirus puumalaense,3052493,primary,,,established,,,"Princk, Christina, et al. ""Cluster of human Puumala orthohantavirus infections due to indoor exposure?An interdisciplinary outbreak investigation.""Zoonoses and Public Health69.5 (2022): 579-586.", -Phlebovirus riftense,3052676,primary,,,established,,,"Morrill, J. C., and D. J. McClain. ""Epidemiology and pathogenesis of Rift Valley fever and other phleboviruses.""The bunyaviridae. Boston, MA: Springer US, 1996. 281-293.", -Rosavirus A,1511805,primary,,,established,,,"Lim, Efrem S., et al. ""Discovery of rosavirus 2, a novel variant of a rodent-associated picornavirus, in children from The Gambia.""Virology454 (2014): 25-33.", +Aichivirus A,72149,primary,,,established,,,"Rivadulla, Enrique, and Jesœs L. Romalde. ""A comprehensive review on human Aichi virus.""ÊVirologica SinicaÊ35.5 (2020): 501-516.", +Akhmeta virus,2200830,primary,,,established,,,"Vora, Neil M., et al. ""Human infection with a zoonotic orthopoxvirus in the country of Georgia.""ÊNew England Journal of MedicineÊ372.13 (2015): 1223-1230.", +Alphapapillomavirus 4,337043,primary,,,established,,,"Zur Hausen, Harald, and Ethel-Michele De Villiers. ""Human papillomaviruses.""ÊAnnual review of microbiologyÊ48.1 (1994): 427-447.", +Alphapapillomavirus 7,337042,primary,,,established,,,"Zur Hausen, Harald, and Ethel-Michele De Villiers. ""Human papillomaviruses.""ÊAnnual review of microbiologyÊ48.1 (1994): 427-447.", +Alphapapillomavirus 9,337041,primary,,,established,,,"Zur Hausen, Harald, and Ethel-Michele De Villiers. ""Human papillomaviruses.""ÊAnnual review of microbiologyÊ48.1 (1994): 427-447.", +Orthohantavirus andesens,1980456,primary,,,established,,,"Martinez, Valeria P., et al. ""Person-to-person transmission of Andes virus.""ÊEmerging infectious diseasesÊ11.12 (2005): 1848.", +Lyssavirus australis,90961,primary,,,established,,,"Francis, Joshua R., et al. ""Australian bat lyssavirus: implications for public health.""ÊThe Medical journal of AustraliaÊ201.11 (2014): 647-649.", +avian paramyxovirus 1,2560319,primary,,,established,,,"Ul_Rahman, Aziz, et al. ""Zoonotic potential of Newcastle disease virus: Old and novel perspectives related to public health.""ÊReviews in medical VirologyÊ32.1 (2022): e2246.", +Banna virus,77763,primary,,,putative,,,"Xu, PuTing, et al. ""New arboviruses isolated from patients with unknown fever and encephalitis in Yunnan Province.""ÊChinese Journal of VirologyÊ6.1 (1990): 27-33.", +Barmah Forest virus,11020,primary,,,established,,,"Lindsay, M., et al. ""Emergence of Barmah Forest virus in Western Australia.""ÊEmerging infectious diseasesÊ1.1 (1995): 22.", +Bandavirus bhanjanagarense,3051989,primary,,,established,,,"Vilibic-Cavlek, Tatjana, et al. ""Detection of Bhanja Bandavirus in patients with neuroinvasive disease of unknown etiology in Croatia.""ÊMicroorganismsÊ11.9 (2023): 2155.", +Orthohantavirus nigrorivense,3052490,primary,,,putative,,,"Zaki, SherifR, et al. ""Retrospective diagnosis of a 1983 case of fatal hantavirus pulmonary syndrome.""ÊThe LancetÊ343.8904 (1994): 1037-1038.", +Borna disease virus,12455,primary,,,putative,,,"Carbone, Kathryn M. ""Borna disease virus and human disease.""ÊClinical microbiology reviewsÊ14.3 (2001): 513-527.", +Bourbon virus,1618189,primary,,,established,,,"Bamunuarachchi, Gayan, et al. ""Detection of Bourbon virus-specific serum neutralizing antibodies in human serum in Missouri, USA.""ÊMsphereÊ7.3 (2022): e00164-22.", +Bufavirus-1,1209382,primary,,,established,,,"Huang, Dou-Dou, et al. ""Identification of bufavirus-1 and bufavirus-3 in feces of patients with acute diarrhea, China.""ÊScientific ReportsÊ5.1 (2015): 13272.", +Bufavirus-3,1391667,primary,,,established,,,"Huang, Dou-Dou, et al. ""Identification of bufavirus-1 and bufavirus-3 in feces of patients with acute diarrhea, China.""ÊScientific ReportsÊ5.1 (2015): 13272.", +Orthobunyavirus bunyamweraense,3052381,primary,,,established,,,"Granoff, Allan, and Robert G. Webster, eds.ÊEncyclopedia of virology. Elsevier, 1999.", +Orthobunyavirus bwambaense,3052384,primary,,,established,,,"Lutwama, Julius J., et al. ""Isolations of Bwamba virus from south central Uganda and north eastern Tanzania.""ÊAfrican health sciencesÊ2.1 (2002): 24-28.", +Orthobunyavirus cacheense,3052385,primary,,,established,,,"Waddell, Lisa, et al. ""Cache Valley virus: A scoping review of the global evidence.""ÊZoonoses and public healthÊ66.7 (2019): 739-758.", +Orthobunyavirus encephalitidis,3052390,primary,,,established,,,"Rust, Robert S., et al. ""Topical review: La Crosse and other forms of California encephalitis.""ÊJournal of child neurologyÊ14.1 (1999): 1-14.", +Cardiovirus A,1821749,primary,,,putative,,,"Oberste, M. Steven, et al. ""Human febrile illness caused by encephalomyocarditis virus infection, Peru.""ÊEmerging infectious diseasesÊ15.4 (2009): 640.", +Vesiculovirus chandipura,1972576,primary,,,established,,,"Menghani, Sunil, et al. ""Chandipura virus: an emerging tropical pathogen.""ÊActa tropicaÊ124.1 (2012): 1-14.", +Colorado tick fever coltivirus,2748762,primary,,,established,,,"Harris, Emma K., Brian D. Foy, and Gregory D. Ebel. ""Colorado tick fever virus: a review of historical literature and research emphasis for a modern era.""ÊJournal of Medical EntomologyÊ60.6 (2023): 1214-1220.", +Orthonairovirus haemorrhagiae,3052518,primary,,,established,,,"Ergonul, Onder. ""Crimean-Congo haemorrhagic fever.""ÊThe Lancet infectious diseasesÊ6.4 (2006): 203-214.", +Thogotovirus dhoriense,11318,primary,,,established,,,"Lled—, Lourdes, Consuelo GimŽnez-Pardo, and Mar’a Isabel Gegœndez. ""Epidemiological study of Thogoto and Dhori virus infection in people bitten by ticks, and in sheep, in an area of Northern Spain.""ÊInternational Journal of Environmental Research and Public HealthÊ17.7 (2020): 2254.", +Orthohantavirus dobravaense,3052477,primary,,,established,,,"Papa, Anna. ""Dobrava-Belgrade virus: phylogeny, epidemiology, disease.""ÊAntiviral ResearchÊ95.2 (2012): 104-117.", +Lyssavirus duvenhage,38767,primary,,,putative,,,"Paweska, Janusz T., et al. ""Fatal human infection with rabies-related Duvenhage virus, South Africa.""ÊEmerging Infectious DiseasesÊ12.12 (2006): 1965.", +Eastern equine encephalitis virus,11021,primary,,,established,,,"Corrin, Tricia, et al. ""Eastern equine encephalitis virus: a scoping review of the global evidence.""ÊVector-Borne and Zoonotic DiseasesÊ21.5 (2021): 305-320.", +Enterovirus A,138948,primary,,,established,,,"Khetsuriani, Nino, et al. ""Enterovirus surveillanceÑUnited States, 1970Ð2005.""ÊMMWR Surveill SummÊ55.8 (2006): 1-20.", +Enterovirus B,138949,primary,,,established,,,"Khetsuriani, Nino, et al. ""Enterovirus surveillanceÑUnited States, 1970Ð2005.""ÊMMWR Surveill SummÊ55.8 (2006): 1-20.", +Enterovirus C,138950,primary,,,established,,,"Khetsuriani, Nino, et al. ""Enterovirus surveillanceÑUnited States, 1970Ð2005.""ÊMMWR Surveill SummÊ55.8 (2006): 1-20.", +Enterovirus D,138951,primary,,,established,,,"Khetsuriani, Nino, et al. ""Enterovirus surveillanceÑUnited States, 1970Ð2005.""ÊMMWR Surveill SummÊ55.8 (2006): 1-20.", +European bat lyssavirus,38768,primary,,,putative,,,"Regnault, BŽatrice, et al. ""First case of lethal encephalitis in Western Europe due to European bat lyssavirus type 1.""ÊClinical Infectious DiseasesÊ74.3 (2022): 461-466.", +Everglades virus,2083198,primary,,,established,,,"Burkett-Cadena, Nathan D., et al. ""Everglades virus: an underrecognized disease-causing subtype of Venezuelan equine encephalitis virus endemic to Florida, USA.""ÊJournal of medical entomologyÊ60.6 (2023): 1149-1164.", +Mammarenavirus guanaritoense,3052307,primary,,,established,,,"Silva-Ramos, Carlos Ramiro, et al. ""An updated review and current challenges of Guanarito virus infection, Venezuelan hemorrhagic fever.""ÊArchives of VirologyÊ167.9 (2022): 1727-1738.", +Orthobunyavirus guaroaense,3052397,primary,,,established,,,"Aguilar, Patricia V., et al. ""Guaroa virus infection among humans in Bolivia and Peru.""ÊThe American journal of tropical medicine and hygieneÊ83.3 (2010): 714.", +Orthohantavirus hantanense,3052480,primary,,,established,,,"Lee, Ho Wang. ""Hemorrhagic fever with renal syndrome in Korea.""ÊReviews of infectious diseasesÊ11.Supplement_4 (1989): S846-S876.", +Bandavirus heartlandense,3051992,primary,,,established,,,"Esguerra, Eden M. ""Heartland virus: a new virus discovered in Missouri.""ÊMissouri MedicineÊ113.4 (2016): 256.", +Hepatitis delta virus,12475,opportunistic,,,established,,,"Rizzetto, Mario. ""Hepatitis D virus: introduction and epidemiology.""ÊCold Spring Harbor perspectives in medicineÊ5.7 (2015): a021576.", +Human mastadenovirus A,129875,primary,,,established,,,"Mennechet, Franck JD, et al. ""A review of 65 years of human adenovirus seroprevalence.""ÊExpert review of vaccinesÊ18.6 (2019): 597-613.", +Human mastadenovirus B,108098,primary,,,established,,,"Mennechet, Franck JD, et al. ""A review of 65 years of human adenovirus seroprevalence.""ÊExpert review of vaccinesÊ18.6 (2019): 597-613.", +Human mastadenovirus C,129951,primary,,,established,,,"Mennechet, Franck JD, et al. ""A review of 65 years of human adenovirus seroprevalence.""ÊExpert review of vaccinesÊ18.6 (2019): 597-613.", +Human mastadenovirus D,130310,primary,,,established,,,"Mennechet, Franck JD, et al. ""A review of 65 years of human adenovirus seroprevalence.""ÊExpert review of vaccinesÊ18.6 (2019): 597-613.", +Human mastadenovirus E,130308,primary,,,established,,,"Mennechet, Franck JD, et al. ""A review of 65 years of human adenovirus seroprevalence.""ÊExpert review of vaccinesÊ18.6 (2019): 597-613.", +Human mastadenovirus F,130309,primary,,,established,,,"Mennechet, Franck JD, et al. ""A review of 65 years of human adenovirus seroprevalence.""ÊExpert review of vaccinesÊ18.6 (2019): 597-613.", +Human mastadenovirus G,536079,primary,,,established,,,"Mennechet, Franck JD, et al. ""A review of 65 years of human adenovirus seroprevalence.""ÊExpert review of vaccinesÊ18.6 (2019): 597-613.", +Human astrovirus,1868658,primary,,,established,,,"Guix, S., A. Bosch, and R. M. Pinto. ""Human astrovirus diagnosis and typing: current and future prospects.""ÊLetters in applied microbiologyÊ41.2 (2005): 103-105.", +Human bocavirus,329641,primary,,,established,,,"Guido, Marcello, et al. ""Human bocavirus: current knowledge and future challenges.""ÊWorld journal of gastroenterologyÊ22.39 (2016): 8684.", +Human betaherpesvirus 5,10359,primary,,,established,,,"Ho, Monto.ÊCytomegalovirus: biology and infection. Springer Science & Business Media, 2013.", +Human betaherpesvirus 6B,32604,primary,,,established,,,"Braun, Daniel K., Geraldina Dominguez, and Philip E. Pellett. ""Human herpesvirus 6.""ÊClinical microbiology reviewsÊ10.3 (1997): 521-567.", +Human coronavirus 229E,11137,primary,,,established,,,"Gaunt, Eleanor R., et al. ""Epidemiology and clinical presentations of the four human coronaviruses 229E, HKU1, NL63, and OC43 detected over 3 years using a novel multiplex real-time PCR method.""ÊJournal of clinical microbiologyÊ48.8 (2010): 2940-2947.", +Human coronavirus HKU1,290028,primary,,,established,,,"Gaunt, Eleanor R., et al. ""Epidemiology and clinical presentations of the four human coronaviruses 229E, HKU1, NL63, and OC43 detected over 3 years using a novel multiplex real-time PCR method.""ÊJournal of clinical microbiologyÊ48.8 (2010): 2940-2947.", +Human coronavirus OC43,31631,primary,,,established,,,"Gaunt, Eleanor R., et al. ""Epidemiology and clinical presentations of the four human coronaviruses 229E, HKU1, NL63, and OC43 detected over 3 years using a novel multiplex real-time PCR method.""ÊJournal of clinical microbiologyÊ48.8 (2010): 2940-2947.", +Human coronavirus NL63,277944,primary,,,established,,,"Gaunt, Eleanor R., et al. ""Epidemiology and clinical presentations of the four human coronaviruses 229E, HKU1, NL63, and OC43 detected over 3 years using a novel multiplex real-time PCR method.""ÊJournal of clinical microbiologyÊ48.8 (2010): 2940-2947.", +Human gammaherpesvirus 4,10376,primary,,,established,,,"Kuri, Ashvin, et al. ""Epidemiology of Epstein-Barr virus infection and infectious mononucleosis in the United Kingdom.""ÊBMC public healthÊ20 (2020): 1-9.", +Human gammaherpesvirus 8,37296,primary,,,established,,,"Dukers, Nicole HTM, and Giovanni Rezza. ""Human herpesvirus 8 epidemiology: what we do and do not know.""ÊAidsÊ17.12 (2003): 1717-1730.", +Human metapneumovirus,162145,primary,,,established,,,"Kahn, Jeffrey S. ""Epidemiology of human metapneumovirus.""ÊClinical microbiology reviewsÊ19.3 (2006): 546-557.", +Human rubulavirus 2,2560525,primary,,,established,,,"DeGroote, Nicholas P., et al. ""Human parainfluenza virus circulation, United States, 2011Ð2019.""ÊJournal of Clinical VirologyÊ124 (2020): 104261.", +Human orthorubulavirus 4,2560526,primary,,,established,,,"Yea, Carmen, et al. ""The complete sequence of a human parainfluenzavirus 4 genome.""ÊVirusesÊ1.1 (2009): 26-41.", +Betapolyomavirus hominis,1891762,primary,,,established,,,"Boothpur, Raghavender, and Daniel C. Brennan. ""Human polyoma viruses and disease with emphasis on clinical BK and JC.""ÊJournal of Clinical VirologyÊ47.4 (2010): 306-312.", +Deltapolyomavirus decihominis,1208309,primary,,,established,,,"Nicol, JŽr™me TJ, et al. ""Seroprevalence of human Malawi polyomavirus.""ÊJournal of clinical microbiologyÊ52.1 (2014): 321-323.", +Betapolyomavirus secuhominis,1891763,primary,,,established,,,"Boothpur, Raghavender, and Daniel C. Brennan. ""Human polyoma viruses and disease with emphasis on clinical BK and JC.""ÊJournal of Clinical VirologyÊ47.4 (2010): 306-312.", +"Betapolyomavirus quartihominis,",1891765,primary,,,established,,,"Boothpur, Raghavender, and Daniel C. Brennan. ""Human polyoma viruses and disease with emphasis on clinical BK and JC.""ÊJournal of Clinical VirologyÊ47.4 (2010): 306-312.", +Alphapolyomavirus quintihominis,1891726,primary,,,established,,,"Boothpur, Raghavender, and Daniel C. Brennan. ""Human polyoma viruses and disease with emphasis on clinical BK and JC.""ÊJournal of Clinical VirologyÊ47.4 (2010): 306-312.", +Alphapolyomavirus octihominis,1891727,opportunistic,,,established,,,"Haycox, Claire L., et al. ""Trichodysplasia spinulosaÐa newly described folliculocentric viral infection in an immunocompromised host.""ÊJournal of Investigative Dermatology Symposium Proceedings. Vol. 4. No. 3. Elsevier, 1999.", +Human respirovirus 1,12730,primary,,,established,,,"Liu, Wen-Kuan, et al. ""Epidemiology and clinical presentation of the four human parainfluenza virus types.""ÊBMC infectious diseasesÊ13 (2013): 1-8.", +Human respirovirus 3,11216,primary,,,established,,,"Liu, Wen-Kuan, et al. ""Epidemiology and clinical presentation of the four human parainfluenza virus types.""ÊBMC infectious diseasesÊ13 (2013): 1-8.", +Rhinovirus A,147711,primary,,,established,,,"Jacobs, Samantha E., et al. ""Human rhinoviruses.""ÊClinical microbiology reviewsÊ26.1 (2013): 135-162.", +Rhinovirus B,147712,primary,,,established,,,"Jacobs, Samantha E., et al. ""Human rhinoviruses.""ÊClinical microbiology reviewsÊ26.1 (2013): 135-162.", +Rhinovirus C,463676,primary,,,established,,,"Jacobs, Samantha E., et al. ""Human rhinoviruses.""ÊClinical microbiology reviewsÊ26.1 (2013): 135-162.", +unclassified Rhinovirus,348531,primary,,,established,,,"Jacobs, Samantha E., et al. ""Human rhinoviruses.""ÊClinical microbiology reviewsÊ26.1 (2013): 135-162.", +Human torovirus,67605,primary,,,established,,,"Duckmanton, Lynn, et al. ""Characterization of torovirus from human fecal specimens.""ÊVirologyÊ239.1 (1997): 158-168.", +Orthobunyavirus ileshaense,3052399,primary,,,established,,,"Chippaux, A., et al. ""The isolation of 2 human strains of Ilesha virus in the Central African Republic.""ÊBulletin de la Societe Medicale d'Afrique Noire de Langue FrancaiseÊ14.1 (1969): 88-92.", +Ilheus virus,59563,primary,,,established,,,"Venegas, Erika A., et al. ""Ilheus virus infection in human, Bolivia.""ÊEmerging infectious diseasesÊ18.3 (2012): 516.", +Vesiculovirus isfahan,1972573,primary,,,established,,,"Tesh, R., et al. ""Isfahan virus, a new vesiculovirus infecting humans, gerbils, and sandflies in Iran.""ÊThe American journal of tropical medicine and hygieneÊ26.2 (1977): 299-306.", +Orthobunyavirus jamestownense,3052402,primary,,,established,,,"Coleman, Kyle J., et al. ""An overview of Jamestown Canyon virus disease.""ÊThe NeurohospitalistÊ11.3 (2021): 277-278.", +Orthobunyavirus lacrosseense,3052409,primary,,,established,,,"Edridge, Arthur Wouter Dante, and Lia van der Hoek. ""Emerging orthobunyaviruses associated with CNS disease.""ÊPLoS neglected tropical diseasesÊ14.10 (2020): e0008856.", +Louping ill virus,11086,primary,,,established,,,"Davidson, Marilyn M., Harry Williams, and John AJ Macleod. ""Louping ill in man: a forgotten disease.""ÊJournal of InfectionÊ23.3 (1991): 241-249.", +Mammarenavirus choriomeningitidis,3052303,primary,,,established,,,"Mehl, Calvin, et al. ""Reemergence of lymphocytic choriomeningitis mammarenavirus, Germany.""ÊEmerging infectious diseasesÊ29.3 (2023): 631.", +Macacine alphaherpesvirus 1,10325,primary,,,established,,,"Weigler, Benjamin J. ""Biology of B virus in macaque and human hosts: a review.""ÊClinical Infectious DiseasesÊ14.2 (1992): 555-567.", +Mammarenavirus machupoense,3052317,primary,,,established,,,"Patterson, Michael, Ashley Grant, and Slobodan Paessler. ""Epidemiology and pathogenesis of Bolivian hemorrhagic fever.""ÊCurrent opinion in virologyÊ5 (2014): 82-90.", +Mammalian orthoreovirus,351073,primary,,,established,,,"Steyer, Andrej, et al. ""High similarity of novel orthoreovirus detected in a child hospitalized with acute gastroenteritis to mammalian orthoreoviruses found in bats in Europe.""ÊJournal of clinical microbiologyÊ51.11 (2013): 3818-3825.", +Mammalian orthorubulavirus 5,2560580,primary,,,established,,,"Goswami, K. K. A., et al. ""Does simian virus 5 infect humans?.""ÊJournal of General VirologyÊ65.8 (1984): 1295-1303.", +Mayaro virus,59301,primary,,,established,,,"Pinheiro, Francisco P., and James W. LeDuc. ""Mayaro virus disease.""ÊArboviruses. CRC Press, 2019. 137-150.", +Measles morbillivirus,11234,primary,,,established,,,"Fiebelkorn, Amy Parker, et al. ""A comparison of postelimination measles epidemiology in the United States, 2009Ð2014 versus 2001Ð2008.""ÊJournal of the Pediatric Infectious Diseases SocietyÊ6.1 (2017): 40-48.", +Middelburg virus,11023,primary,,,established,,,"Fourie, Isabel, et al. ""Detection and genome characterization of Middelburg virus strains isolated from CSF and whole blood samples of humans with neurological manifestations in South Africa.""ÊPLoS neglected tropical diseasesÊ16.1 (2022): e0010020.", +Lyssavirus mokola,12538,primary,,,putative,,,"Familusi, J. B., and D. L. Moore. ""Isolation of a rabies related virus from the cerebrospinal fluid of a child with"" aseptic meningitis"".""ÊAfr. J. Med. Sci.Ê3.1 (1972): 93-6.", +Molluscum contagiosum virus,10279,primary,,,established,,,"Hebert, Adelaide A., Neal Bhatia, and James Q. Del Rosso. ""Molluscum Contagiosum: Epidemiology, Considerations, Treatment Options, and Therapeutic Gaps.""ÊThe Journal of Clinical and Aesthetic DermatologyÊ16.8 Suppl 1 (2023): S4.", +Mucambo virus,60875,primary,,,established,,,"de Mucha-Mac’as, Julio, and Imelda S‡nchez-Sp’ndola. ""Two human cases of laboratory infection with Mucambo virus."" (1965): 475-8.", +Mumps orthorubulavirus,2560602,primary,,,established,,,"Mourez, Thomas, and Julia Dina. ""Mumps virus: a comprehensive review.""ÊVirologieÊ22.4 (2018).", +Mupapillomavirus 1,334203,primary,,,established,,,"Chang, Fuju, et al. ""Human papillomavirus (HPV) infections and their associations with oral disease.""ÊJournal of oral pathology & medicineÊ20.7 (1991): 305-317.", +Murray Valley encephalitis virus,11079,primary,,,established,,,"Selvey, Linda A., et al. ""The changing epidemiology of Murray Valley encephalitis in Australia: the 2011 outbreak and a review of the literature.""ÊPLoS neglected tropical diseasesÊ8.1 (2014): e2656.", +Orthonairovirus fnairobiens,3052529,primary,,,established,,,"Sudeep, A. B., R. S. Jadi, and A. C. Mishra. ""Ganjam virus.""ÊIndian Journal of Medical ResearchÊ130.5 (2009): 514-519.", +Phlebovirus napoliense,3052666,primary,,,established,,,"Nicoletti, L., M. G. Ciufolini, and P. Verani.ÊSandfly fever viruses in Italy. Springer Vienna, 1996.", +Norwalk virus,11983,primary,,,established,,,"Estes, Mary K., and Isabelle Leparc-Goffart. ""NORWALK AND RELATED VIRUSES (CALICIVIRIDAE).""ÊEncyclopedia of virologyÊ(1999): 1035.", +Onyong-nyong virus,2169701,primary,,,established,,,"Rezza, Giovanni, Rubing Chen, and Scott C. Weaver. ""OÕnyong-nyong fever: a neglected mosquito-borne viral disease.""ÊPathogens and global healthÊ111.6 (2017): 271-275.", +Orthobunyavirus oropoucheense,3052429,primary,,,established,,,"Vasconcelos, Pedro FC, and Charles H. Calisher. ""Emergence of human arboviral diseases in the Americas, 2000Ð2016.""ÊVector-borne and zoonotic diseasesÊ16.5 (2016): 295-301.", +Paslahepevirus balayani,1678143,primary,,,established,,,"Li, Pengfei, et al. ""The global epidemiology of hepatitis E virus infection: a systematic review and meta_analysis.""ÊLiver InternationalÊ40.7 (2020): 1516-1528.", +Orungo virus,40058,primary,,,established,,,"Tomori, O., and A. Fabiyi. ""Neutralizing antibodies to Orungo virus in man and animals in Nigeria.""ÊTropical and geographical medicineÊ28.3 (1976): 233-238.", +Parechovirus A,1803956,primary,,,established,,,"Romero, JosŽ R., and Rangaraj Selvarangan. ""The human Parechoviruses: an overview.""ÊAdvances in PediatricsÊ58.1 (2011): 65-85.", +Parechovirus B,1803957,primary,,,established,,,"Romero, JosŽ R., and Rangaraj Selvarangan. ""The human Parechoviruses: an overview.""ÊAdvances in PediatricsÊ58.1 (2011): 65-85.", +Pegivirus hominis,3052608,primary,,,established,,,"Yu, Yaqi, et al. ""Review of human pegivirus: Prevalence, transmission, pathogenesis, and clinical implication.""ÊVirulenceÊ13.1 (2022): 323-340.", +Powassan virus,11083,primary,,,established,,,"Hermance, Meghan E., and Saravanan Thangamani. ""Powassan virus: an emerging arbovirus of public health concern in North America.""ÊVector-Borne and Zoonotic DiseasesÊ17.7 (2017): 453-462.", +Erythroparvovirus primate1,3052189,primary,,,established,,,"Krumova, Stefka, et al. ""Primate Erythroparvovirus 1 Infection in Patients with Hematological Disorders.""ÊPathogensÊ11.5 (2022): 497.", +Phlebovirus toroense,3052684,primary,,,established,,,"Gundacker, Nathan D., et al. ""Clinical manifestations of Punta Toro virus species complex infections, Panama, 2009.""ÊEmerging infectious diseasesÊ23.5 (2017): 872.", +Orthohantavirus puumalaense,3052493,primary,,,established,,,"Princk, Christina, et al. ""Cluster of human Puumala orthohantavirus infections due to indoor exposure?ÑAn interdisciplinary outbreak investigation.""ÊZoonoses and Public HealthÊ69.5 (2022): 579-586.", +Phlebovirus riftense,3052676,primary,,,established,,,"Morrill, J. C., and D. J. McClain. ""Epidemiology and pathogenesis of Rift Valley fever and other phleboviruses.""ÊThe bunyaviridae. Boston, MA: Springer US, 1996. 281-293.", +Rosavirus A,1511805,primary,,,established,,,"Lim, Efrem S., et al. ""Discovery of rosavirus 2, a novel variant of a rodent-associated picornavirus, in children from The Gambia.""ÊVirologyÊ454 (2014): 25-33.", Ross River virus,11029,primary,,,established,,,"Russell, Richard C. ""Ross River virus: ecology and distribution."" Annual review of entomology 47.1 (2002): 1-31.", -Rotavirus A,28875,primary,,,established,,,"Desselberger, Ulrich, Miren Iturriza_Gmara, and Jim J. Gray. ""Rotavirus epidemiology and surveillance.""Gastroenteritis viruses: Novartis Foundation symposium 238. Vol. 238. Chichester, UK: John Wiley & Sons, Ltd, 2001.", -Rotavirus B,28876,primary,,,established,,,"Desselberger, Ulrich, Miren Iturriza_Gmara, and Jim J. Gray. ""Rotavirus epidemiology and surveillance.""Gastroenteritis viruses: Novartis Foundation symposium 238. Vol. 238. Chichester, UK: John Wiley & Sons, Ltd, 2001.", -Rotavirus C,36427,primary,,,established,,,"Desselberger, Ulrich, Miren Iturriza_Gmara, and Jim J. Gray. ""Rotavirus epidemiology and surveillance.""Gastroenteritis viruses: Novartis Foundation symposium 238. Vol. 238. Chichester, UK: John Wiley & Sons, Ltd, 2001.", -Rubella virus,11041,primary,,,established,,,"Naeye, Richard L., and William Blanc. ""Pathogenesis of congenital rubella.""Jama194.12 (1965): 1277-1283.", -Russian Spring-Summer encephalitis virus,64316,primary,,,established,,,"Haymaker, Webb, G. E. Sather, and W. McD Hammon. ""Accidental Russian Spring-Summer Viral Encephalitis: Cases Occurring in Two Laboratory Workers, One Fatal, with Postmortem Study.""AMA Archives of Neurology & Psychiatry73.6 (1955): 609-630.", -Salivirus A,1330524,primary,,,established,,,"Reuter, Gbor, Pter Pankovics, and kos Boros. ""Salivirusesthe first knowledge about a newly discovered human picornavirus.""Reviews in Medical Virology27.1 (2017): e1904.", -Sapporo virus,95342,primary,,,established,,,"Becker-Dreps, Sylvia, Fredman Gonzlez, and Filemn Bucardo. ""Sapovirus: an emerging cause of childhood diarrhea.""Current opinion in infectious diseases33.5 (2020): 388-397.", -Semliki Forest virus,11033,primary,,,established,,,"Fazakerley, John K. ""Pathogenesis of Semliki Forest virus encephalitis.""Journal of neurovirology8 (2002).", -Orthohantavirus seoulense,3052498,primary,,,established,,,"Clement, Jan, et al. ""Clinical characteristics of ratborne Seoul hantavirus disease.""Emerging infectious diseases25.2 (2019): 387.", -Severe acute respiratory syndrome coronavirus,2901879,primary,,,established,,,"Drosten, Christian, et al. ""Identification of a novel coronavirus in patients with severe acute respiratory syndrome.""New England journal of medicine348.20 (2003): 1967-1976.", -Phlebovirus siciliaense,3052681,primary,,,established,,,"Percivalle, Elena, et al. ""Thirteen years of phleboviruses circulation in Lombardy, a Northern Italy region.""Viruses13.2 (2021): 209.", -Orthohantavirus sinnombreense,3052499,primary,,,established,,,"Vial, Pablo A., et al. ""Hantavirus in humans: A review of clinical aspects and management.""The Lancet Infectious Diseases(2023).", -Sindbis virus,11034,primary,,,established,,,"Adouchief, Samuel, et al. ""Sindbis virus as a human pathogenepidemiology, clinical picture and pathogenesis.""Reviews in medical virology26.4 (2016): 221-241.", -Spondweni virus,64318,primary,,,established,,,"Wolfe, MartinS, CharlesH Calisher, and Karen Mcguire. ""Spondweni virus infection in a foreign resident of Upper Volta.""The Lancet320.8311 (1982): 1306-1308.", -Orthobunyavirus khatangaense,3052407,primary,,,established,,,"Putkuri, Niina, et al. ""Acute human Inkoo and Chatanga virus infections, Finland.""Emerging Infectious Diseases22.5 (2016): 810.", -Tanapox virus,99000,primary,,,established,,,"Downie, A. W., et al. ""Tanapox: a new disease caused by a pox virus.""Br Med J1.5745 (1971): 363-368.", -Tonate virus,60877,primary,,,established,,,"Talarmin, Antoine, et al. ""Tonate virus infection in French Guiana: clinical aspects and seroepidemiologic study.""The American journal of tropical medicine and hygiene64.5 (2001): 274-279.", -Phlebovirus toscanaense,3052686,primary,,,established,,,"Charrel, Rmi N., et al. ""Emergence of Toscana virus in Europe.""Emerging infectious diseases11.11 (2005): 1657.", -Vesicular stomatitis virus,11276,primary,,,established,,,"Letchworth, G. J., L. L. Rodriguez, and J. Del Cbarrera. ""Vesicular stomatitis.""The Veterinary Journal157.3 (1999): 239-260.", -Wesselsbron virus,164416,primary,,,established,,,"Weyer, Jacqueline, et al. ""Human cases of Wesselsbron disease, South Africa 20102011.""Vector-borne and Zoonotic Diseases13.5 (2013): 330-336.", -Western equine encephalitis virus,11039,primary,,,established,,,"Atkins, Gregory J. ""The pathogenesis of alphaviruses.""International Scholarly Research Notices2013 (2013).", -Mammarenavirus whitewaterense,3052331,primary,,,established,,,"Fulhorst, Charles F., et al. ""Geographic distribution and genetic diversity of Whitewater Arroyo virus in the southwestern United States.""Emerging Infectious Diseases7.3 (2001): 403.", +Rotavirus A,28875,primary,,,established,,,"Desselberger, Ulrich, Miren Iturriza_G—mara, and Jim J. Gray. ""Rotavirus epidemiology and surveillance.""ÊGastroenteritis viruses: Novartis Foundation symposium 238. Vol. 238. Chichester, UK: John Wiley & Sons, Ltd, 2001.", +Rotavirus B,28876,primary,,,established,,,"Desselberger, Ulrich, Miren Iturriza_G—mara, and Jim J. Gray. ""Rotavirus epidemiology and surveillance.""ÊGastroenteritis viruses: Novartis Foundation symposium 238. Vol. 238. Chichester, UK: John Wiley & Sons, Ltd, 2001.", +Rotavirus C,36427,primary,,,established,,,"Desselberger, Ulrich, Miren Iturriza_G—mara, and Jim J. Gray. ""Rotavirus epidemiology and surveillance.""ÊGastroenteritis viruses: Novartis Foundation symposium 238. Vol. 238. Chichester, UK: John Wiley & Sons, Ltd, 2001.", +Rubella virus,11041,primary,,,established,,,"Naeye, Richard L., and William Blanc. ""Pathogenesis of congenital rubella.""ÊJamaÊ194.12 (1965): 1277-1283.", +Russian Spring-Summer encephalitis virus,64316,primary,,,established,,,"Haymaker, Webb, G. E. Sather, and W. McD Hammon. ""Accidental Russian Spring-Summer Viral Encephalitis: Cases Occurring in Two Laboratory Workers, One Fatal, with Postmortem Study.""ÊAMA Archives of Neurology & PsychiatryÊ73.6 (1955): 609-630.", +Salivirus A,1330524,primary,,,established,,,"Reuter, G‡bor, PŽter Pankovics, and çkos Boros. ""SalivirusesÑthe first knowledge about a newly discovered human picornavirus.""ÊReviews in Medical VirologyÊ27.1 (2017): e1904.", +Sapporo virus,95342,primary,,,established,,,"Becker-Dreps, Sylvia, Fredman Gonz‡lez, and Filem—n Bucardo. ""Sapovirus: an emerging cause of childhood diarrhea.""ÊCurrent opinion in infectious diseasesÊ33.5 (2020): 388-397.", +Semliki Forest virus,11033,primary,,,established,,,"Fazakerley, John K. ""Pathogenesis of Semliki Forest virus encephalitis.""ÊJournal of neurovirologyÊ8 (2002).", +Orthohantavirus seoulense,3052498,primary,,,established,,,"Clement, Jan, et al. ""Clinical characteristics of ratborne Seoul hantavirus disease.""ÊEmerging infectious diseasesÊ25.2 (2019): 387.", +Severe acute respiratory syndrome coronavirus,2901879,primary,,,established,,,"Drosten, Christian, et al. ""Identification of a novel coronavirus in patients with severe acute respiratory syndrome.""ÊNew England journal of medicineÊ348.20 (2003): 1967-1976.", +Phlebovirus siciliaense,3052681,primary,,,established,,,"Percivalle, Elena, et al. ""Thirteen years of phleboviruses circulation in Lombardy, a Northern Italy region.""ÊVirusesÊ13.2 (2021): 209.", +Orthohantavirus sinnombreense,3052499,primary,,,established,,,"Vial, Pablo A., et al. ""Hantavirus in humans: A review of clinical aspects and management.""ÊThe Lancet Infectious DiseasesÊ(2023).", +Sindbis virus,11034,primary,,,established,,,"Adouchief, Samuel, et al. ""Sindbis virus as a human pathogenÑepidemiology, clinical picture and pathogenesis.""ÊReviews in medical virologyÊ26.4 (2016): 221-241.", +Spondweni virus,64318,primary,,,established,,,"Wolfe, MartinS, CharlesH Calisher, and Karen Mcguire. ""Spondweni virus infection in a foreign resident of Upper Volta.""ÊThe LancetÊ320.8311 (1982): 1306-1308.", +Orthobunyavirus khatangaense,3052407,primary,,,established,,,"Putkuri, Niina, et al. ""Acute human Inkoo and Chatanga virus infections, Finland.""ÊEmerging Infectious DiseasesÊ22.5 (2016): 810.", +Tanapox virus,99000,primary,,,established,,,"Downie, A. W., et al. ""Tanapox: a new disease caused by a pox virus.""ÊBr Med JÊ1.5745 (1971): 363-368.", +Tonate virus,60877,primary,,,established,,,"Talarmin, Antoine, et al. ""Tonate virus infection in French Guiana: clinical aspects and seroepidemiologic study.""ÊThe American journal of tropical medicine and hygieneÊ64.5 (2001): 274-279.", +Phlebovirus toscanaense,3052686,primary,,,established,,,"Charrel, RŽmi N., et al. ""Emergence of Toscana virus in Europe.""ÊEmerging infectious diseasesÊ11.11 (2005): 1657.", +Vesicular stomatitis virus,11276,primary,,,established,,,"Letchworth, G. J., L. L. Rodriguez, and J. Del Cbarrera. ""Vesicular stomatitis.""ÊThe Veterinary JournalÊ157.3 (1999): 239-260.", +Wesselsbron virus,164416,primary,,,established,,,"Weyer, Jacqueline, et al. ""Human cases of Wesselsbron disease, South Africa 2010Ð2011.""ÊVector-borne and Zoonotic DiseasesÊ13.5 (2013): 330-336.", +Western equine encephalitis virus,11039,primary,,,established,,,"Atkins, Gregory J. ""The pathogenesis of alphaviruses.""ÊInternational Scholarly Research NoticesÊ2013 (2013).", +Mammarenavirus whitewaterense,3052331,primary,,,established,,,"Fulhorst, Charles F., et al. ""Geographic distribution and genetic diversity of Whitewater Arroyo virus in the southwestern United States.""ÊEmerging Infectious DiseasesÊ7.3 (2001): 403.", Plasmodium falciparum,36329,primary,blood,,established,,,https://stanfordhealthcare.org/medical-conditions/primary-care/malaria/types.html, Plasmodium malariae,5858,primary,blood,,established,,,https://stanfordhealthcare.org/medical-conditions/primary-care/malaria/types.html, Plasmodium vivax,5855,primary,blood,,established,,,https://stanfordhealthcare.org/medical-conditions/primary-care/malaria/types.html, Plasmodium ovale,36330,primary,blood,,established,,,https://stanfordhealthcare.org/medical-conditions/primary-care/malaria/types.html, Plasmodium knowlesi,5851,primary,blood,,established,,,https://stanfordhealthcare.org/medical-conditions/primary-care/malaria/types.html, Cyclospora cayetanensis,88456,primary,"blood, gut",,established,,,, -Saccharomyces cerevisiae,559292,commensal,nasal,"gut, oral",established,,,doi: 10.1111/j.1365-294X.2007.03266.x, \ No newline at end of file +Saccharomyces cerevisiae,559292,commensal,nasal,"gut, oral",established,,,doi: 10.1111/j.1365-294X.2007.03266.x, From 97362b19c22061239c15a5d508c999f18a14ae0d Mon Sep 17 00:00:00 2001 From: Merritt-Brian <50592701+Merritt-Brian@users.noreply.github.com> Date: Wed, 26 Jun 2024 15:19:37 -0400 Subject: [PATCH 5/5] Update pathogen_sheet.csv --- assets/pathogen_sheet.csv | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/assets/pathogen_sheet.csv b/assets/pathogen_sheet.csv index c24872f..49fbc5c 100644 --- a/assets/pathogen_sheet.csv +++ b/assets/pathogen_sheet.csv @@ -122,7 +122,7 @@ Burkholderia lata,482957,opportunistic,oral,,established,,,"Vanlaere, Elke, et a Burkholderia ubonensis,101571,,,,putative,,,"Vanlaere, Elke, et al. ""Burkholderia latens sp. nov., Burkholderia diffusa sp. nov., Burkholderia arboris sp. nov., Burkholderia seminalis sp. nov. and Burkholderia metallica sp. nov., novel species within the Burkholderia cepacia complex.""International Journal of Systematic and Evolutionary Microbiology58.7 (2008): 1580-1590.", Burkholderia arboris,488730,,,,established,,,"Vanlaere, Elke, et al. ""Burkholderia latens sp. nov., Burkholderia diffusa sp. nov., Burkholderia arboris sp. nov., Burkholderia seminalis sp. nov. and Burkholderia metallica sp. nov., novel species within the Burkholderia cepacia complex.""International Journal of Systematic and Evolutionary Microbiology58.7 (2008): 1580-1590.", Burkholderia diffusa,488732,,,,established,,,"Vanlaere, Elke, et al. ""Burkholderia latens sp. nov., Burkholderia diffusa sp. nov., Burkholderia arboris sp. nov., Burkholderia seminalis sp. nov. and Burkholderia metallica sp. nov., novel species within the Burkholderia cepacia complex.""International Journal of Systematic and Evolutionary Microbiology58.7 (2008): 1580-1590.", -Burkholderia latens,488446,,blood,,,established,,,"Vanlaere, Elke, et al. ""Burkholderia latens sp. nov., Burkholderia diffusa sp. nov., Burkholderia arboris sp. nov., Burkholderia seminalis sp. nov. and Burkholderia metallica sp. nov., novel species within the Burkholderia cepacia complex.""International Journal of Systematic and Evolutionary Microbiology58.7 (2008): 1580-1590.", +Burkholderia latens,488446,,blood,,established,,,"Vanlaere, Elke, et al. ""Burkholderia latens sp. nov., Burkholderia diffusa sp. nov., Burkholderia arboris sp. nov., Burkholderia seminalis sp. nov. and Burkholderia metallica sp. nov., novel species within the Burkholderia cepacia complex.""International Journal of Systematic and Evolutionary Microbiology58.7 (2008): 1580-1590.", Burkholderia metallica,488729,,,,established,,,"Vanlaere, Elke, et al. ""Burkholderia latens sp. nov., Burkholderia diffusa sp. nov., Burkholderia arboris sp. nov., Burkholderia seminalis sp. nov. and Burkholderia metallica sp. nov., novel species within the Burkholderia cepacia complex.""International Journal of Systematic and Evolutionary Microbiology58.7 (2008): 1580-1590.", Burkholderia seminalis,488731,,,,established,,,"Vanlaere, Elke, et al. ""Burkholderia latens sp. nov., Burkholderia diffusa sp. nov., Burkholderia arboris sp. nov., Burkholderia seminalis sp. nov. and Burkholderia metallica sp. nov., novel species within the Burkholderia cepacia complex.""International Journal of Systematic and Evolutionary Microbiology58.7 (2008): 1580-1590.", Ralstonia mannitolytica,105219,opportunistic,blood,,established,,,"Vaneechoutte, Mario, et al. ""One case each of recurrent meningitis and hemoperitoneum infection with Ralstonia mannitolilytica.""Journal of clinical microbiology39.12 (2001): 4588-4590.",