diff --git a/man/VLPFractionSamplePileup.Rd b/man/VLPFractionSamplePileup.Rd
index 0108783..7a3dc15 100644
--- a/man/VLPFractionSamplePileup.Rd
+++ b/man/VLPFractionSamplePileup.Rd
@@ -38,16 +38,21 @@ BBMap. The bbmap.sh bincov parameter with covbinsize=100 was used to create a
 pileup file with 100 bp windows. A subset of 10 contigs from the pileup file
 were selected for this sample dataset. The contigs were chosen because their
 associated read coverage patterns in the VLP-fraction exemplify TrIdent's
-pattern-matching functionality across classifications: NODE_617:
-Prophage-like, active/abundant, with spec transduction NODE_125:
-Prophage-like, off one side of contig, no spec transduction NODE_352:
-Sloping, left to right slope NODE_251: Sloping, right to left slope
-NODE_2060: Sloping, right to left slope with start NODE_1401: None, no
-pattern match NODE_62: Prophage-like, with spec transduction NODE_368:
-Prophage-like, not homogeneously integrated/present, no spec transduction
-NODE_560: HighCovNoPattern NODE_1165: None, filtered out To access the
-sequencing data used to generate this pileup file and for additional details
-on the assembly and mapping parameters, refer to the reference below:
+pattern-matching functionality across classifications:
+NODE_617:Prophage-like, active/abundant, with spec transduction
+NODE_125:Prophage-like, off one side of contig, no spec transduction
+NODE_352:Sloping, left to right slope
+NODE_251: Sloping, right to left slope
+NODE_2060: Sloping, right to left slope with start
+NODE_1401: None, no pattern match
+NODE_62: Prophage-like, with spec transduction
+NODE_368: Prophage-like, not homogeneously integrated/present, no spec
+transduction
+NODE_560: HighCovNoPattern
+NODE_1165: None, filtered out
+To access the sequencing data used to generate this pileup file and for
+additional details on the assembly and mapping parameters, refer to the
+reference below:
 Reference: Kleiner, M., Bushnell, B., Sanderson, K.E. et al. Transductomics:
 sequencing-based detection and analysis of transduced DNA in pure cultures
 and microbial communities. Microbiome 8, 158 (2020).
diff --git a/man/WholeCommunitySamplePileup.Rd b/man/WholeCommunitySamplePileup.Rd
index cb98f55..72717fc 100644
--- a/man/WholeCommunitySamplePileup.Rd
+++ b/man/WholeCommunitySamplePileup.Rd
@@ -39,15 +39,20 @@ file with 100 bp windows. A subset of 10 contigs from the pileup file were
 selected for this sample dataset. The contigs were chosen because their
 associated read coverage patterns in the VLP-fraction exemplify TrIdent's
 pattern-matching and characterization functionality across classifications:
-NODE_617: Prophage-like, active/abundant, with spec transduction NODE_125:
-Prophage-like, off one side of contig, no spec transduction NODE_352:
-Sloping, left to right slope NODE_251: Sloping, right to left slope
-NODE_2060: Sloping, right to left slope with start NODE_1401: None, no
-pattern match NODE_62: Prophage-like, with spec transduction NODE_368:
-Prophage-like, not homogeneously integrated/present, no spec transduction
-NODE_560: HighCovNoPattern NODE_1165: None, filtered out To access the
-sequencing data used to generate this pileup file and for additional details
-on the assembly and mapping parameters, refer to the reference below:
+NODE_617:Prophage-like, active/abundant, with spec transduction
+NODE_125:Prophage-like, off one side of contig, no spec transduction
+NODE_352:Sloping, left to right slope
+NODE_251: Sloping, right to left slope
+NODE_2060: Sloping, right to left slope with start
+NODE_1401: None, no pattern match
+NODE_62: Prophage-like, with spec transduction
+NODE_368: Prophage-like, not homogeneously integrated/present, no spec
+transduction
+NODE_560: HighCovNoPattern
+NODE_1165: None, filtered out
+To access the sequencing data used to generate this pileup file and for
+additional details on the assembly and mapping parameters, refer to the
+reference below:
 Reference: Kleiner, M., Bushnell, B., Sanderson, K.E. et al. Transductomics:
 sequencing-based detection and analysis of transduced DNA in pure cultures
 and microbial communities. Microbiome 8, 158 (2020).