submit-export-jobs

#!/bin/bash

# Export overlapping chunks that were independently aligned with a
# transformation that is the linear interpolant of both independently
# estimated transformations in the overlapping range, weights run from 0-1
# across the range.
#
# Call:
#       ./submit-export-jobs <file-list> <chunk-size>

n=`wc -l < ${1}`
mod=${2:-100}

step=$(($mod/2))
first=0
last=$(($n-1))

pwd=`pwd`
mkdir -p $pwd/jobs/log
cd $pwd/jobs/log

#echo "qsub -pe batch 4 `pwd`/jobs/export-project-range-$first-$(($first+$step-1))"
#qsub -pe batch 4 `pwd`/jobs/export-project-range-$first-$(($first+$step-1))

#for i in `seq $first $step $(($last-3*$step))` 
for i in `seq $first $step $(($last-$step))` 
do
	range="$i-$(($i+3*$step-1))"
#	echo "qsub -pe batch 4 `pwd`/jobs/export-project-intersection-$range"
	# qsub -pe batch 16 -l night=true `pwd`/jobs/export-project-intersection-$range
	qsub -cwd -pe batch 16 $pwd/jobs/export-project-intersection-$range
done

cd $pwd