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barcode.bed
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Chromosome 1130 1131 lineage4.2.2.1 A Euro-American LAM7-TUR None
Chromosome 4205 4206 lineage4.1.3 T Euro-American T;X;H None
Chromosome 9943 9944 lineage4.2.2 C Euro-American (Ural) T;LAM7-TUR None
Chromosome 10359 10360 lineage1.2.2.1 C Indo-Oceanic NA RD239
Chromosome 10726 10727 La1.8 G M.bovis None None
Chromosome 12203 12204 lineage3 A East-African-Indian CAS RD750
Chromosome 12233 12234 lineage1.1.2 G Indo-Oceanic EAI3;EAI5 RD239
Chromosome 12554 12555 lineage4.5 T Euro-American H;T RD122
Chromosome 13174 13175 lineage1.2.1.2 G Indo-Oceanic NA RD239
Chromosome 13528 13529 lineage5.1.3 A West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 14250 14251 lineage4.3 A Euro-American (LAM) mainly-LAM None
Chromosome 15035 15036 lineage4.4.1.1.1 G Euro-American S;Orphans None
Chromosome 15176 15177 lineage1.1.3 G Indo-Oceanic EAI6 RD239
Chromosome 17664 17665 lineage4.6.5 A Euro-American T;LAM None
Chromosome 17841 17842 lineage3.1.3 C East-African-Indian CAS RD750
Chromosome 18090 18091 lineage4.6 A Euro-American T;LAM None
Chromosome 19946 19947 lineage6.1.2 A West-Africa 2 AFRI_1 RD702
Chromosome 20406 20407 lineage1.2.2 A Indo-Oceanic EAI1 RD239
Chromosome 22806 22807 lineage5.2 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 23296 23297 La1.3 T M.bovis None None
Chromosome 25138 25139 lineage1.1.3.2 G Indo-Oceanic NA RD239
Chromosome 25305 25306 La1.8.1 G M.bovis None None
Chromosome 26299 26300 lineage4.1.1.2 C Euro-American (X-type) X1 None
Chromosome 28438 28439 lineage1.2.1.1 C Indo-Oceanic NA RD239
Chromosome 30311 30312 lineage6.1.2 A West-Africa 2 AFRI_1 RD702
Chromosome 32580 32581 lineage4.1.3 T Euro-American T;X;H None
Chromosome 32772 32773 lineage1.2.2 A Indo-Oceanic EAI1 RD239
Chromosome 34604 34605 lineage3.1.2 A East-African-Indian CAS;CAS2 RD750
Chromosome 37240 37241 lineage6.2 A West-Africa 2 AFRI_1 RD702
Chromosome 39157 39158 lineage2 G East-Asian Beijing RD105
Chromosome 47698 47699 lineage4.3.2 A Euro-American (LAM) LAM3 None
Chromosome 47977 47978 lineage6.2.2 T West-Africa 2 AFRI_1 RD702
Chromosome 49078 49079 lineage4.6.2 G Euro-American T;LAM RD726
Chromosome 51458 51459 La1.5 C M.bovis None None
Chromosome 54303 54304 lineage4.6 T Euro-American T;LAM None
Chromosome 56603 56604 lineage4.4.1.2 A Euro-American T1 None
Chromosome 57161 57162 lineage5.1.5 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 58785 58786 lineage4.1.4 C Euro-American T;X;H None
Chromosome 60296 60297 lineage1.2.2.1 C Indo-Oceanic NA RD239
Chromosome 61841 61842 lineage1.2.2.2 C Indo-Oceanic NA RD239
Chromosome 62656 62657 lineage4.1 A Euro-American T;X;H None
Chromosome 65810 65811 lineage6.1.1 T West-Africa 2 AFRI_1 RD702
Chromosome 67075 67076 La1.3 T M.bovis None None
Chromosome 67812 67813 lineage1.2.1.1 A Indo-Oceanic NA RD239
Chromosome 67968 67969 lineage1.1.3.3 T Indo-Oceanic NA RD239
Chromosome 68226 68227 lineage6.3 T West-Africa 2 AFRI_1 RD702
Chromosome 68687 68688 lineage4.4.1.1.1 T Euro-American S;Orphans None
Chromosome 69341 69342 lineage4.6.2.2 A Euro-American (Cameroon) LAM10-CAM RD726
Chromosome 69872 69873 lineage4.1.1.1 A Euro-American (X-type) X2 RD183
Chromosome 69983 69984 lineage3 A East-African-Indian CAS RD750
Chromosome 71498 71499 lineage5.1.5 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 71635 71636 lineage5.1.2 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 74955 74956 lineage4.2.2 C Euro-American (Ural) T;LAM7-TUR None
Chromosome 78092 78093 lineage6.3 A West-Africa 2 AFRI_1 RD702
Chromosome 83841 83842 lineage4.1.2 A Euro-American T;H None
Chromosome 85984 85985 lineage3.1.1 C East-African-Indian CAS1-Kili RD750
Chromosome 88763 88764 lineage1.2.2.2 T Indo-Oceanic NA RD239
Chromosome 90228 90229 lineage4.9.1 T Euro-American (H37Rv-like) T1 None
Chromosome 90369 90370 lineage4.1.4 T Euro-American T;X;H None
Chromosome 93043 93044 lineage4.6.2.2 A Euro-American (Cameroon) LAM10-CAM RD726
Chromosome 94018 94019 lineage5.1.5 C West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 97897 97898 lineage9 T Lineage 9 None None
Chromosome 98535 98536 lineage6.3 T West-Africa 2 AFRI_1 RD702
Chromosome 103180 103181 lineage4.2 G Euro-American H;T;LAM None
Chromosome 107793 107794 lineage4.1.2.1 T Euro-American (Haarlem) T1;H1 RD182
Chromosome 111850 111851 lineage4.6.3 A Euro-American T;LAM None
Chromosome 112489 112490 lineage5.1.5 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 112957 112958 lineage4.1.2.1.1 A Euro-American (Haarlem) T1;H1 RD182
Chromosome 117294 117295 lineage1.1 A Indo-Oceanic EAI3;EAI4;EAI5;EAI6 RD239
Chromosome 118467 118468 La1.7 T M.bovis None None
Chromosome 118468 118469 lineage4.6.2.2 A Euro-American (Cameroon) LAM10-CAM RD726
Chromosome 119599 119600 lineage4.9.1 G Euro-American (H37Rv-like) T1 None
Chromosome 121462 121463 lineage4.2.2.1 T Euro-American LAM7-TUR None
Chromosome 122793 122794 lineage4.6 G Euro-American T;LAM None
Chromosome 128263 128264 La1.2.BCG G M.bovis BCG None
Chromosome 129851 129852 lineage4.1.4 T Euro-American T;X;H None
Chromosome 130448 130449 lineage4.6.1.2 A Euro-American T2 RD724
Chromosome 135328 135329 lineage2.2.1 T East-Asian (Beijing) Beijing-RD181 RD105;RD207;RD181
Chromosome 135694 135695 lineage4.4.1.1.1 A Euro-American S;Orphans None
Chromosome 136350 136351 lineage6.2.2 A West-Africa 2 AFRI_1 RD702
Chromosome 136731 136732 lineage6.1.2 T West-Africa 2 AFRI_1 RD702
Chromosome 138787 138788 lineage4.6.1.2 T Euro-American T2 RD724
Chromosome 142316 142317 lineage4.6.2.2 T Euro-American (Cameroon) LAM10-CAM RD726
Chromosome 143534 143535 lineage9 T Lineage 9 None None
Chromosome 144389 144390 lineage4.1.1.3 A Euro-American (X-type) X1;X3 RD193
Chromosome 147654 147655 lineage4.3.2.1 C Euro-American (LAM) LAM3 RD761
Chromosome 152091 152092 lineage4.2.2.1 T Euro-American LAM7-TUR None
Chromosome 154050 154051 lineage1.2.2 G Indo-Oceanic EAI1 RD239
Chromosome 154989 154990 lineage2.2.2 T East-Asian (Beijing) Beijing-RD105/RD207 RD105;RD207
Chromosome 155292 155293 lineage4.1.1.3 A Euro-American (X-type) X1;X3 RD193
Chromosome 155554 155555 lineage4.6.5 T Euro-American T;LAM None
Chromosome 162580 162581 lineage4.3 A Euro-American (LAM) mainly-LAM None
Chromosome 163704 163705 lineage2.2.1 T East-Asian (Beijing) Beijing-RD181 RD105;RD207;RD181
Chromosome 164681 164682 lineage1.1.3.2 T Indo-Oceanic NA RD239
Chromosome 166347 166348 lineage4.6.2.2 C Euro-American (Cameroon) LAM10-CAM RD726
Chromosome 176820 176821 lineage4.6.4 G Euro-American T;LAM None
Chromosome 184253 184254 lineage4.1.3 C Euro-American T;X;H None
Chromosome 187284 187285 lineage1.1.3.2 C Indo-Oceanic NA RD239
Chromosome 187341 187342 lineage3.1.2.2 C East-African-Indian CAS RD750
Chromosome 191217 191218 lineage5.1.3 C West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 193734 193735 lineage4.2.2 G Euro-American (Ural) T;LAM7-TUR None
Chromosome 195681 195682 lineage2.2 G East-Asian (Beijing) Beijing-RD207 RD105;RD207
Chromosome 197046 197047 lineage4.3.4.1 G Euro-American (LAM) LAM1;LAM2 RD174
Chromosome 197396 197397 lineage4.4.1 C Euro-American (S-type) S;T None
Chromosome 201122 201123 lineage4.1.1.1 C Euro-American (X-type) X2 RD183
Chromosome 201895 201896 lineage4.7 G Euro-American (mainly T) T1;T5 None
Chromosome 202714 202715 lineage6.2 G West-Africa 2 AFRI_1 RD702
Chromosome 203213 203214 lineage6.1.3 C West-Africa 2 AFRI_1 RD702
Chromosome 204723 204724 lineage1.2.2.1 A Indo-Oceanic NA RD239
Chromosome 205401 205402 lineage4.3.1 T Euro-American (LAM) LAM9 None
Chromosome 206480 206481 lineage4 C Euro-American LAM;T;S;X;H None
Chromosome 208709 208710 lineage4.4.1.1.1 A Euro-American S;Orphans None
Chromosome 208781 208782 lineage2.1 C East-Asian (non-Beijing) None None
Chromosome 211575 211576 lineage4.2.1.1 A Euro-American (TUR) H3;H4 None
Chromosome 212243 212244 lineage4.8 A Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 214035 214036 lineage4.8.3 T Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 215612 215613 lineage4.6.1.1 A Euro-American T2-Uganda RD724
Chromosome 215976 215977 lineage2.2.1 T East-Asian (Beijing) Beijing-RD181 RD105;RD207;RD181
Chromosome 216468 216469 lineage2.1 T East-Asian (non-Beijing) None None
Chromosome 217305 217306 lineage4.2 G Euro-American H;T;LAM None
Chromosome 219754 219755 lineage9 T Lineage 9 None None
Chromosome 220103 220104 La1.8.X-unk6 T M.bovis None None
Chromosome 221189 221190 lineage8 T Lineage 8 None None
Chromosome 223626 223627 lineage4.3.1.1 A Euro-American (LAM) LAM9 None
Chromosome 224900 224901 lineage4.4.1.1 G Euro-American S;Orphans None
Chromosome 225038 225039 lineage1.1.2 A Indo-Oceanic EAI3;EAI5 RD239
Chromosome 225494 225495 lineage4.3.4.2.1 C Euro-American (LAM) LAM11 RD174
Chromosome 225656 225657 lineage5.3 A West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 230257 230258 lineage9 T Lineage 9 None None
Chromosome 231260 231261 lineage5.1.3 A West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 234694 234695 lineage4.1.3 T Euro-American T;X;H None
Chromosome 240753 240754 lineage5.1.3 G West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 247551 247552 lineage6.1.2 A West-Africa 2 AFRI_1 RD702
Chromosome 252494 252495 lineage4.6.3 A Euro-American T;LAM None
Chromosome 252899 252900 lineage2.2.2 T East-Asian (Beijing) Beijing-RD105/RD207 RD105;RD207
Chromosome 253968 253969 lineage4.1.1.1 A Euro-American (X-type) X2 RD183
Chromosome 255224 255225 lineage4.1.2.1.1 A Euro-American (Haarlem) T1;H1 RD182
Chromosome 257040 257041 lineage4.9.1 T Euro-American (H37Rv-like) T1 None
Chromosome 260801 260802 lineage5.2 A West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 261627 261628 lineage5.3 C West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 262867 262868 lineage4.8.3 G Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 263056 263057 lineage1.2.1.2 G Indo-Oceanic NA RD239
Chromosome 264534 264535 lineage1.1.3.3 T Indo-Oceanic NA RD239
Chromosome 265967 265968 lineage4.1.1 G Euro-American (X-type) X1;X2;X3 None
Chromosome 266114 266115 lineage4.1.1.2 T Euro-American (X-type) X1 None
Chromosome 270361 270362 lineage8 A Lineage 8 None None
Chromosome 272677 272678 lineage1 T Indo-Oceanic EAI RD239
Chromosome 274929 274930 lineage4.1.1.2 A Euro-American (X-type) X1 None
Chromosome 276362 276363 lineage6.1.1 T West-Africa 2 AFRI_1 RD702
Chromosome 278188 278189 lineage1.1.1 C Indo-Oceanic EAI4;EAI5 RD239
Chromosome 279802 279803 lineage5.1.1 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 281207 281208 lineage1.1 T Indo-Oceanic EAI3;EAI4;EAI5;EAI6 RD239
Chromosome 281315 281316 lineage4.5 T Euro-American H;T RD122
Chromosome 281663 281664 lineage4.6.3 G Euro-American T;LAM None
Chromosome 282485 282486 lineage1.2.1.1 A Indo-Oceanic NA RD239
Chromosome 282891 282892 lineage2 T East-Asian Beijing RD105
Chromosome 284622 284623 lineage4.1 A Euro-American T;X;H None
Chromosome 285095 285096 lineage1.1.3.2 T Indo-Oceanic NA RD239
Chromosome 286299 286300 lineage4.1.1.3.1 A Euro-American (X-type) X1;X3 RD193
Chromosome 288172 288173 lineage3.1.2.2 C East-African-Indian CAS RD750
Chromosome 288951 288952 La1.8 T M.bovis None None
Chromosome 292633 292634 lineage4.8.3 G Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 294595 294596 lineage2.2.2 G East-Asian (Beijing) Beijing-RD105/RD207 RD105;RD207
Chromosome 294934 294935 lineage6.2.3 A West-Africa 2 AFRI_1 RD702
Chromosome 297395 297396 lineage1.2.1.2.1 A Indo-Oceanic NA RD239
Chromosome 298595 298596 lineage6.3 C West-Africa 2 AFRI_1 RD702
Chromosome 300110 300111 lineage2.1 G East-Asian (non-Beijing) None None
Chromosome 302190 302191 lineage5.1.5 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 303110 303111 lineage6.3.1 A West-Africa 2 AFRI_1 RD702
Chromosome 303413 303414 lineage1.2.1 T Indo-Oceanic EAI2 RD239
Chromosome 304049 304050 lineage1.1.3.1 C Indo-Oceanic NA RD239
Chromosome 305345 305346 lineage4.1.4 T Euro-American T;X;H None
Chromosome 305454 305455 lineage1.1.3.1 A Indo-Oceanic NA RD239
Chromosome 306112 306113 lineage4.8.1 T Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 306638 306639 lineage4.2.1 C Euro-American (TUR) H3;H4 None
Chromosome 311379 311380 lineage6.2.2 C West-Africa 2 AFRI_1 RD702
Chromosome 311612 311613 lineage4.9 G Euro-American (H37Rv-like) T1 None
Chromosome 312943 312944 lineage4.6 T Euro-American T;LAM None
Chromosome 313424 313425 lineage1.1.1 T Indo-Oceanic EAI4;EAI5 RD239
Chromosome 313604 313605 La1.7.1 A M.bovis None None
Chromosome 314337 314338 lineage4.2.1 G Euro-American (TUR) H3;H4 None
Chromosome 317044 317045 lineage1.1.3 A Indo-Oceanic EAI6 RD239
Chromosome 318067 318068 La1.2 T M.bovis None None
Chromosome 321557 321558 lineage2.1 T East-Asian (non-Beijing) None None
Chromosome 323525 323526 lineage1.1.3.2 G Indo-Oceanic NA RD239
Chromosome 324661 324662 lineage4.3.1.1 T Euro-American (LAM) LAM9 None
Chromosome 325037 325038 lineage4.6 A Euro-American T;LAM None
Chromosome 326038 326039 lineage4.3.2 T Euro-American (LAM) LAM3 None
Chromosome 327231 327232 La3 C M.orygis None None
Chromosome 328640 328641 lineage4.1.1.3 T Euro-American (X-type) X1;X3 RD193
Chromosome 329078 329079 lineage6.3 G West-Africa 2 AFRI_1 RD702
Chromosome 342200 342201 lineage4.4.1.2 G Euro-American T1 None
Chromosome 342339 342340 lineage4.1.2.1 T Euro-American (Haarlem) T1;H1 RD182
Chromosome 342872 342873 lineage3 T East-African-Indian CAS RD750
Chromosome 343091 343092 lineage3.1.2.2 T East-African-Indian CAS RD750
Chromosome 343313 343314 lineage8 T Lineage 8 None None
Chromosome 344287 344288 lineage1 G Indo-Oceanic EAI RD239
Chromosome 344413 344414 lineage8 C Lineage 8 None None
Chromosome 345316 345317 lineage5 C West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 345696 345697 lineage4.4.1.2 T Euro-American T1 None
Chromosome 346692 346693 lineage2.2.2 T East-Asian (Beijing) Beijing-RD105/RD207 RD105;RD207
Chromosome 346897 346898 lineage3.1.2.2 T East-African-Indian CAS RD750
Chromosome 347976 347977 lineage8 C Lineage 8 None None
Chromosome 349080 349081 lineage7 A Lineage 7 None None
Chromosome 352645 352646 lineage5 A West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 353765 353766 lineage4.2.2 C Euro-American (Ural) T;LAM7-TUR None
Chromosome 353766 353767 lineage4.2.2 T Euro-American (Ural) T;LAM7-TUR None
Chromosome 354233 354234 lineage5.2 A West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 355180 355181 lineage4.4.1.1 A Euro-American S;Orphans None
Chromosome 361144 361145 lineage4.4.1.1 C Euro-American S;Orphans None
Chromosome 363463 363464 lineage2.2 A East-Asian (Beijing) Beijing-RD207 RD105;RD207
Chromosome 383080 383081 lineage4.4.1.1 G Euro-American S;Orphans None
Chromosome 393779 393780 lineage4.3.4.1 G Euro-American (LAM) LAM1;LAM2 RD174
Chromosome 394921 394922 lineage4.9.1 T Euro-American (H37Rv-like) T1 None
Chromosome 403480 403481 lineage1.1.3.1 T Indo-Oceanic NA RD239
Chromosome 403919 403920 lineage4.3.3 T Euro-American (LAM) LAM;T RD115
Chromosome 406388 406389 lineage1.1 A Indo-Oceanic EAI3;EAI4;EAI5;EAI6 RD239
Chromosome 415692 415693 lineage3.1.3 A East-African-Indian CAS RD750
Chromosome 420007 420008 lineage4.9 A Euro-American (H37Rv-like) T1 None
Chromosome 420307 420308 lineage6.2 T West-Africa 2 AFRI_1 RD702
Chromosome 422878 422879 lineage4.2.1 A Euro-American (TUR) H3;H4 None
Chromosome 423333 423334 lineage1.1 A Indo-Oceanic EAI3;EAI4;EAI5;EAI6 RD239
Chromosome 435189 435190 lineage4.1.2 T Euro-American T;H None
Chromosome 435707 435708 lineage4.6.1 A Euro-American (Uganda) T2 RD724
Chromosome 436202 436203 lineage6.2.2 G West-Africa 2 AFRI_1 RD702
Chromosome 438443 438444 La1.6 C M.bovis None None
Chromosome 442071 442072 lineage8 A Lineage 8 None None
Chromosome 443276 443277 lineage4.1.2 C Euro-American T;H None
Chromosome 446164 446165 lineage4.1.2 C Euro-American T;H None
Chromosome 449193 449194 lineage2.2.2 A East-Asian (Beijing) Beijing-RD105/RD207 RD105;RD207
Chromosome 449703 449704 lineage4.8.1 T Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 455758 455759 lineage4.4.1.1.1 G Euro-American S;Orphans None
Chromosome 457031 457032 lineage4.3.2.1 C Euro-American (LAM) LAM3 RD761
Chromosome 457391 457392 lineage3.1.3 A East-African-Indian CAS RD750
Chromosome 458047 458048 lineage6.3.2 C West-Africa 2 AFRI_1 RD702
Chromosome 461438 461439 lineage6.3.1 A West-Africa 2 AFRI_1 RD702
Chromosome 464957 464958 lineage5.1 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 465299 465300 lineage2.2 T East-Asian (Beijing) Beijing-RD207 RD105;RD207
Chromosome 465836 465837 lineage1.2.1.1 A Indo-Oceanic NA RD239
Chromosome 465863 465864 lineage6.2 T West-Africa 2 AFRI_1 RD702
Chromosome 471575 471576 La1.4 C M.bovis None None
Chromosome 472123 472124 lineage1.2.1.1 T Indo-Oceanic NA RD239
Chromosome 472897 472898 lineage5.1.1 A West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 479631 479632 lineage4.3.3 T Euro-American (LAM) LAM;T RD115
Chromosome 481568 481569 lineage4.2.1.1 A Euro-American (TUR) H3;H4 None
Chromosome 483488 483489 lineage1.2.2 A Indo-Oceanic EAI1 RD239
Chromosome 485433 485434 lineage4.1.4 A Euro-American T;X;H None
Chromosome 488795 488796 lineage4.6.1 A Euro-American (Uganda) T2 RD724
Chromosome 489023 489024 lineage5.1 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 489239 489240 lineage2.1 G East-Asian (non-Beijing) None None
Chromosome 490375 490376 lineage6.3.2 T West-Africa 2 AFRI_1 RD702
Chromosome 492768 492769 lineage5.1.5 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 495103 495104 lineage4.1.1.2 T Euro-American (X-type) X1 None
Chromosome 495691 495692 lineage6.2.3 A West-Africa 2 AFRI_1 RD702
Chromosome 497490 497491 lineage2 A East-Asian Beijing RD105
Chromosome 498009 498010 lineage1.1.2 C Indo-Oceanic EAI3;EAI5 RD239
Chromosome 498530 498531 lineage4 A Euro-American LAM;T;S;X;H None
Chromosome 506385 506386 lineage4.4.1.1 C Euro-American S;Orphans None
Chromosome 511349 511350 lineage5.3 A West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 514244 514245 lineage4.1.1 T Euro-American (X-type) X1;X2;X3 None
Chromosome 522052 522053 lineage2.1 A East-Asian (non-Beijing) None None
Chromosome 526895 526896 M.canetti C M.canetti None None
Chromosome 528780 528781 lineage1.2.1.2 A Indo-Oceanic NA RD239
Chromosome 529362 529363 lineage1.1.1 T Indo-Oceanic EAI4;EAI5 RD239
Chromosome 533327 533328 La2 A M.caprae None None
Chromosome 533546 533547 lineage2.2.1 G East-Asian (Beijing) Beijing-RD181 RD105;RD207;RD181
Chromosome 534204 534205 lineage5.1 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 534690 534691 lineage4.3 T Euro-American (LAM) mainly-LAM None
Chromosome 535694 535695 lineage4.3.3 T Euro-American (LAM) LAM;T RD115
Chromosome 540939 540940 La1.7 C M.bovis None None
Chromosome 541047 541048 lineage4.1.1.2 G Euro-American (X-type) X1 None
Chromosome 541200 541201 lineage4.9 A Euro-American (H37Rv-like) T1 None
Chromosome 541868 541869 lineage6.2.2 T West-Africa 2 AFRI_1 RD702
Chromosome 545116 545117 lineage4.8.1 A Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 545402 545403 La1.8.X-unk6 T M.bovis None None
Chromosome 546356 546357 lineage4 A Euro-American LAM;T;S;X;H None
Chromosome 550572 550573 lineage4.3.4.2.1 C Euro-American (LAM) LAM11 RD174
Chromosome 550975 550976 lineage5.1.2 G West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 551418 551419 lineage4.1.4 G Euro-American T;X;H None
Chromosome 552360 552361 lineage1.2.2 A Indo-Oceanic EAI1 RD239
Chromosome 554492 554493 lineage5.1 A West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 556960 556961 lineage4.9.1 T Euro-American (H37Rv-like) T1 None
Chromosome 559349 559350 lineage1.1.2 A Indo-Oceanic EAI3;EAI5 RD239
Chromosome 561020 561021 lineage4.6.2 A Euro-American T;LAM RD726
Chromosome 567445 567446 lineage1.1.2 A Indo-Oceanic EAI3;EAI5 RD239
Chromosome 569044 569045 lineage1.1.2 T Indo-Oceanic EAI3;EAI5 RD239
Chromosome 571942 571943 lineage4.3.4 A Euro-American (LAM) LAM RD174
Chromosome 576076 576077 lineage4.2.2 T Euro-American (Ural) T;LAM7-TUR None
Chromosome 578031 578032 lineage4.6.1.2 T Euro-American T2 RD724
Chromosome 590249 590250 lineage4.1.4 T Euro-American T;X;H None
Chromosome 590594 590595 lineage1.2.1.1 A Indo-Oceanic NA RD239
Chromosome 594026 594027 lineage4.1.1.2 T Euro-American (X-type) X1 None
Chromosome 594056 594057 La1.5 A M.bovis None None
Chromosome 596474 596475 lineage1.2.2.2 T Indo-Oceanic NA RD239
Chromosome 599576 599577 lineage6.1.2 T West-Africa 2 AFRI_1 RD702
Chromosome 599867 599868 lineage4 A Euro-American LAM;T;S;X;H None
Chromosome 606375 606376 lineage4.6.3 A Euro-American T;LAM None
Chromosome 608178 608179 lineage4.1.1.2 T Euro-American (X-type) X1 None
Chromosome 609253 609254 lineage4.2.1 T Euro-American (TUR) H3;H4 None
Chromosome 611462 611463 lineage4.2.2.2 A Euro-American (Ural) T;LAM7-TUR None
Chromosome 615937 615938 lineage1 A Indo-Oceanic EAI RD239
Chromosome 616407 616408 lineage4.8.3 G Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 617987 617988 lineage5.1.4 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 620028 620029 lineage4.5 T Euro-American H;T RD122
Chromosome 622546 622547 lineage4.6.3 T Euro-American T;LAM None
Chromosome 632329 632330 lineage4.3.4.2 T Euro-American (LAM) LAM1;LAM4;LAM11 RD174
Chromosome 633630 633631 lineage1.1.3.3 T Indo-Oceanic NA RD239
Chromosome 636623 636624 La1.7.X-unk4 T M.bovis None None
Chromosome 637729 637730 lineage4.1.2.1 T Euro-American (Haarlem) T1;H1 RD182
Chromosome 638211 638212 lineage4.2.1.1 T Euro-American (TUR) H3;H4 None
Chromosome 646242 646243 lineage4.3.2 C Euro-American (LAM) LAM3 None
Chromosome 646530 646531 lineage1 T Indo-Oceanic EAI RD239
Chromosome 648464 648465 lineage2.1 G East-Asian (non-Beijing) None None
Chromosome 651771 651772 lineage4.4.1 A Euro-American (S-type) S;T None
Chromosome 652949 652950 lineage3 C East-African-Indian CAS RD750
Chromosome 654995 654996 lineage1.2.1 T Indo-Oceanic EAI2 RD239
Chromosome 656297 656298 lineage6.2.3 G West-Africa 2 AFRI_1 RD702
Chromosome 662910 662911 lineage4 T Euro-American LAM;T;S;X;H None
Chromosome 663076 663077 lineage6.2.3 A West-Africa 2 AFRI_1 RD702
Chromosome 665901 665902 lineage6.2 T West-Africa 2 AFRI_1 RD702
Chromosome 666744 666745 lineage4.8.2 A Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 670803 670804 lineage6.3.2 A West-Africa 2 AFRI_1 RD702
Chromosome 671384 671385 lineage2.2.1.1 G East-Asian (Beijing) Beijing-RD150 RD105;RD207;RD181;RD150
Chromosome 681312 681313 lineage4.8.2 T Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 685577 685578 lineage1.1.3.1 A Indo-Oceanic NA RD239
Chromosome 685868 685869 lineage4.6.1 A Euro-American (Uganda) T2 RD724
Chromosome 687188 687189 lineage4.1.3 G Euro-American T;X;H None
Chromosome 693520 693521 lineage9 T Lineage 9 None None
Chromosome 701866 701867 lineage1.1.1 T Indo-Oceanic EAI4;EAI5 RD239
Chromosome 703721 703722 lineage4.1.1.3.1 G Euro-American (X-type) X1;X3 RD193
Chromosome 705061 705062 lineage4.4.1.1 C Euro-American S;Orphans None
Chromosome 705569 705570 lineage1.1 T Indo-Oceanic EAI3;EAI4;EAI5;EAI6 RD239
Chromosome 705594 705595 lineage4.3.2 T Euro-American (LAM) LAM3 None
Chromosome 707485 707486 M.canetti C M.canetti None None
Chromosome 709492 709493 lineage4.8.3 T Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 709656 709657 lineage5.1.4 C West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 711154 711155 lineage1.1.2 A Indo-Oceanic EAI3;EAI5 RD239
Chromosome 715516 715517 lineage5.1.1 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 716917 716918 lineage4.7 A Euro-American (mainly T) T1;T5 None
Chromosome 717878 717879 lineage1.2.2.1 A Indo-Oceanic NA RD239
Chromosome 721580 721581 lineage5.1.2 G West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 723564 723565 lineage4.1.3 C Euro-American T;X;H None
Chromosome 724338 724339 lineage4.1.3 T Euro-American T;X;H None
Chromosome 729356 729357 lineage1.2.2.2 T Indo-Oceanic NA RD239
Chromosome 731014 731015 lineage2.2.1.1 G East-Asian (Beijing) Beijing-RD150 RD105;RD207;RD181;RD150
Chromosome 732060 732061 lineage5.1.5 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 734561 734562 lineage4.6.3 A Euro-American T;LAM None
Chromosome 738602 738603 lineage1.1.3.1 T Indo-Oceanic NA RD239
Chromosome 738836 738837 lineage2.2.1.2 T East-Asian (Beijing) Beijing-RD142 RD105;RD207;RD181;RD142
Chromosome 740854 740855 lineage4.1.2.1.1 C Euro-American (Haarlem) T1;H1 RD182
Chromosome 742269 742270 lineage8 T Lineage 8 None None
Chromosome 745875 745876 lineage1.1 G Indo-Oceanic EAI3;EAI4;EAI5;EAI6 RD239
Chromosome 748922 748923 lineage4.8.3 T Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 753087 753088 lineage4.4 T Euro-American S;T None
Chromosome 756567 756568 lineage6.2 A West-Africa 2 AFRI_1 RD702
Chromosome 758121 758122 lineage4.6.3 T Euro-American T;LAM None
Chromosome 764151 764152 M.canetti T M.canetti None None
Chromosome 771653 771654 lineage5.3 G West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 771722 771723 lineage6.3.2 A West-Africa 2 AFRI_1 RD702
Chromosome 772739 772740 La1.7 T M.bovis None None
Chromosome 772802 772803 lineage4.3.1.1 G Euro-American (LAM) LAM9 None
Chromosome 773808 773809 lineage4.3 A Euro-American (LAM) mainly-LAM None
Chromosome 778297 778298 lineage4.6.2 T Euro-American T;LAM RD726
Chromosome 783600 783601 lineage4.2.1 C Euro-American (TUR) H3;H4 None
Chromosome 784142 784143 lineage7 C Lineage 7 None None
Chromosome 784439 784440 lineage4.3.4.2 T Euro-American (LAM) LAM1;LAM4;LAM11 RD174
Chromosome 784580 784581 lineage4.3.2.1 C Euro-American (LAM) LAM3 RD761
Chromosome 791670 791671 lineage3.1.2.1 C East-African-Indian CAS2 RD750
Chromosome 794734 794735 lineage3.1.3 A East-African-Indian CAS RD750
Chromosome 795562 795563 lineage4.1.4 T Euro-American T;X;H None
Chromosome 796875 796876 lineage4.7 G Euro-American (mainly T) T1;T5 None
Chromosome 797735 797736 lineage2.2.1 T East-Asian (Beijing) Beijing-RD181 RD105;RD207;RD181
Chromosome 801958 801959 lineage5 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 806604 806605 lineage4.2.1.1 T Euro-American (TUR) H3;H4 None
Chromosome 809980 809981 lineage5.2 A West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 811491 811492 lineage1 G Indo-Oceanic EAI RD239
Chromosome 811641 811642 lineage7 T Lineage 7 None None
Chromosome 811752 811753 lineage2 T East-Asian Beijing RD105
Chromosome 812501 812502 lineage1 T Indo-Oceanic EAI RD239
Chromosome 812807 812808 lineage4.3.3 A Euro-American (LAM) LAM;T RD115
Chromosome 818797 818798 lineage4.6.1.2 T Euro-American T2 RD724
Chromosome 821101 821102 lineage4.4.1 T Euro-American (S-type) S;T None
Chromosome 821436 821437 lineage5.1.1 A West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 825584 825585 lineage4.3.1 C Euro-American (LAM) LAM9 None
Chromosome 831205 831206 lineage4.3.4.1 T Euro-American (LAM) LAM1;LAM2 RD174
Chromosome 832071 832072 lineage1.1.3 C Indo-Oceanic EAI6 RD239
Chromosome 832707 832708 lineage4.1.2 C Euro-American T;H None
Chromosome 851796 851797 lineage1.1.1.1 A Indo-Oceanic EAI4;ZERO RD239
Chromosome 852640 852641 lineage1.1.3 T Indo-Oceanic EAI6 RD239
Chromosome 853468 853469 lineage4.3.2 A Euro-American (LAM) LAM3 None
Chromosome 860033 860034 lineage6.3.2 A West-Africa 2 AFRI_1 RD702
Chromosome 863339 863340 lineage4.6.2 C Euro-American T;LAM RD726
Chromosome 864165 864166 lineage1.2.1 T Indo-Oceanic EAI2 RD239
Chromosome 865760 865761 lineage1 T Indo-Oceanic EAI RD239
Chromosome 868005 868006 lineage4.6.2 T Euro-American T;LAM RD726
Chromosome 869439 869440 lineage4.1.1 T Euro-American (X-type) X1;X2;X3 None
Chromosome 870111 870112 lineage1.1.1 T Indo-Oceanic EAI4;EAI5 RD239
Chromosome 870186 870187 lineage4.2.1.1 T Euro-American (TUR) H3;H4 None
Chromosome 870309 870310 lineage6.1.3 G West-Africa 2 AFRI_1 RD702
Chromosome 874118 874119 lineage6.1.3 A West-Africa 2 AFRI_1 RD702
Chromosome 875033 875034 lineage3.1.2.2 A East-African-Indian CAS RD750
Chromosome 876377 876378 lineage4.6.1.1 C Euro-American T2-Uganda RD724
Chromosome 877054 877055 lineage1.1.3 C Indo-Oceanic EAI6 RD239
Chromosome 885633 885634 lineage6.2.3 A West-Africa 2 AFRI_1 RD702
Chromosome 888213 888214 lineage4.9.1 A Euro-American (H37Rv-like) T1 None
Chromosome 891755 891756 lineage4.1.2 G Euro-American T;H None
Chromosome 892415 892416 lineage2.2 T East-Asian (Beijing) Beijing-RD207 RD105;RD207
Chromosome 894078 894079 lineage4.1.1.1 T Euro-American (X-type) X2 RD183
Chromosome 895562 895563 lineage6.3.1 A West-Africa 2 AFRI_1 RD702
Chromosome 896118 896119 lineage4.6.2.1 T Euro-American T3 RD726
Chromosome 896151 896152 lineage8 T Lineage 8 None None
Chromosome 896355 896356 lineage4.1.1.3 T Euro-American (X-type) X1;X3 RD193
Chromosome 896430 896431 lineage7 A Lineage 7 None None
Chromosome 898136 898137 lineage6.2.2 T West-Africa 2 AFRI_1 RD702
Chromosome 899318 899319 lineage4.2.1.1 G Euro-American (TUR) H3;H4 None
Chromosome 902412 902413 lineage4.1 T Euro-American T;X;H None
Chromosome 903225 903226 lineage6.2.3 T West-Africa 2 AFRI_1 RD702
Chromosome 903261 903262 lineage8 A Lineage 8 None None
Chromosome 903912 903913 lineage4.9 T Euro-American (H37Rv-like) T1 None
Chromosome 912544 912545 lineage4.6.3 G Euro-American T;LAM None
Chromosome 917595 917596 lineage2.2.2 A East-Asian (Beijing) Beijing-RD105/RD207 RD105;RD207
Chromosome 918645 918646 lineage6.2.1 A West-Africa 2 AFRI_1 RD702
Chromosome 919392 919393 lineage4.3.3 C Euro-American (LAM) LAM;T RD115
Chromosome 923064 923065 lineage4.1 A Euro-American T;X;H None
Chromosome 931122 931123 lineage4 T Euro-American LAM;T;S;X;H None
Chromosome 938152 938153 lineage3.1.3 G East-African-Indian CAS RD750
Chromosome 951566 951567 lineage6.1.3 G West-Africa 2 AFRI_1 RD702
Chromosome 953396 953397 lineage4.8.2 T Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 958361 958362 lineage3.1 G East-African-Indian Non-CAS1-Delhi RD750
Chromosome 961597 961598 lineage3.1.2.1 G East-African-Indian CAS2 RD750
Chromosome 963021 963022 lineage5.2 C West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 964098 964099 lineage4.4.1.1 C Euro-American S;Orphans None
Chromosome 973289 973290 lineage4.5 A Euro-American H;T RD122
Chromosome 979313 979314 lineage4.6.1 T Euro-American (Uganda) T2 RD724
Chromosome 979858 979859 lineage4.1.1.3 C Euro-American (X-type) X1;X3 RD193
Chromosome 982362 982363 lineage6 T West-Africa 2 AFRI_1 RD702
Chromosome 985286 985287 lineage4.4.2 A Euro-American T1;T2 None
Chromosome 990382 990383 lineage1.2.1 A Indo-Oceanic EAI2 RD239
Chromosome 990532 990533 lineage4.3.4.2 C Euro-American (LAM) LAM1;LAM4;LAM11 RD174
Chromosome 993015 993016 lineage3.1.2 A East-African-Indian CAS;CAS2 RD750
Chromosome 996870 996871 lineage4.6.1.1 A Euro-American T2-Uganda RD724
Chromosome 1006079 1006080 lineage4.1.1.1 A Euro-American (X-type) X2 RD183
Chromosome 1010531 1010532 lineage4.6.2 A Euro-American T;LAM RD726
Chromosome 1011205 1011206 lineage5.3 G West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 1014057 1014058 lineage5.1.2 A West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 1014721 1014722 lineage5.3 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 1017835 1017836 lineage4.2.1 C Euro-American (TUR) H3;H4 None
Chromosome 1018810 1018811 lineage1.2.2 A Indo-Oceanic EAI1 RD239
Chromosome 1020731 1020732 La1.7.X-unk5 C M.bovis None None
Chromosome 1025613 1025614 lineage4.1.2.1.1 T Euro-American (Haarlem) T1;H1 RD182
Chromosome 1028943 1028944 lineage4.1.1.3 T Euro-American (X-type) X1;X3 RD193
Chromosome 1030367 1030368 lineage4.6.2.1 G Euro-American T3 RD726
Chromosome 1037354 1037355 lineage4.3.4 C Euro-American (LAM) LAM RD174
Chromosome 1038107 1038108 lineage3.1.2.1 G East-African-Indian CAS2 RD750
Chromosome 1039980 1039981 lineage1.1.1 C Indo-Oceanic EAI4;EAI5 RD239
Chromosome 1049904 1049905 lineage5.3 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 1051948 1051949 lineage4.4.1 A Euro-American (S-type) S;T None
Chromosome 1052898 1052899 lineage4.4 T Euro-American S;T None
Chromosome 1053307 1053308 lineage4.2.2.1 T Euro-American LAM7-TUR None
Chromosome 1055671 1055672 lineage4.3.2.1 A Euro-American (LAM) LAM3 RD761
Chromosome 1060877 1060878 lineage1.1.3.1 T Indo-Oceanic NA RD239
Chromosome 1064933 1064934 lineage5.1.4 G West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 1065610 1065611 La1.4 A M.bovis None None
Chromosome 1069145 1069146 lineage6 T West-Africa 2 AFRI_1 RD702
Chromosome 1072627 1072628 lineage1.2.2 A Indo-Oceanic EAI1 RD239
Chromosome 1074928 1074929 lineage4.9.1 C Euro-American (H37Rv-like) T1 None
Chromosome 1082444 1082445 lineage4.8 A Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 1082982 1082983 lineage4.1.2.1.1 A Euro-American (Haarlem) T1;H1 RD182
Chromosome 1083081 1083082 lineage4.3.1.1 T Euro-American (LAM) LAM9 None
Chromosome 1098697 1098698 lineage4.6.1.2 G Euro-American T2 RD724
Chromosome 1099211 1099212 lineage1.2.1 T Indo-Oceanic EAI2 RD239
Chromosome 1102467 1102468 lineage2 A East-Asian Beijing RD105
Chromosome 1106648 1106649 lineage4.3.4.1 C Euro-American (LAM) LAM1;LAM2 RD174
Chromosome 1107319 1107320 lineage5.3 A West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 1109534 1109535 lineage4.1.1.2 A Euro-American (X-type) X1 None
Chromosome 1111468 1111469 lineage1.1.1.1 T Indo-Oceanic EAI4;ZERO RD239
Chromosome 1111924 1111925 lineage4.1.2 G Euro-American T;H None
Chromosome 1115795 1115796 lineage4.2.1.1 A Euro-American (TUR) H3;H4 None
Chromosome 1120158 1120159 lineage6.2.2 A West-Africa 2 AFRI_1 RD702
Chromosome 1125893 1125894 lineage7 C Lineage 7 None None
Chromosome 1126894 1126895 lineage4.4.1.1.1 A Euro-American S;Orphans None
Chromosome 1129157 1129158 lineage4.8.3 G Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 1130525 1130526 lineage4.8 A Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 1132367 1132368 lineage4.3.4.2 T Euro-American (LAM) LAM1;LAM4;LAM11 RD174
Chromosome 1132436 1132437 lineage4.8.1 T Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 1134958 1134959 lineage6.1.3 C West-Africa 2 AFRI_1 RD702
Chromosome 1135797 1135798 lineage2.1 T East-Asian (non-Beijing) None None
Chromosome 1136016 1136017 lineage1.2.1 G Indo-Oceanic EAI2 RD239
Chromosome 1137517 1137518 lineage7 A Lineage 7 None None
Chromosome 1142265 1142266 lineage4.3 C Euro-American (LAM) mainly-LAM None
Chromosome 1144220 1144221 lineage1.1.3 A Indo-Oceanic EAI6 RD239
Chromosome 1147707 1147708 lineage4.6.5 A Euro-American T;LAM None
Chromosome 1153213 1153214 lineage5.3 A West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 1153675 1153676 lineage4.1.2 G Euro-American T;H None
Chromosome 1154367 1154368 lineage4.8.3 C Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 1155867 1155868 lineage4.8.1 T Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 1158433 1158434 La1.7.X-unk4 A M.bovis None None
Chromosome 1169027 1169028 lineage4.3.1 A Euro-American (LAM) LAM9 None
Chromosome 1172078 1172079 lineage4.3.1 G Euro-American (LAM) LAM9 None
Chromosome 1184797 1184798 lineage1.1.3 T Indo-Oceanic EAI6 RD239
Chromosome 1193667 1193668 lineage1.1.3.3 A Indo-Oceanic NA RD239
Chromosome 1204545 1204546 lineage4.8.2 G Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 1208651 1208652 lineage4.4.1 A Euro-American (S-type) S;T None
Chromosome 1221278 1221279 lineage6.3 T West-Africa 2 AFRI_1 RD702
Chromosome 1221478 1221479 lineage4.4.1.1.1 T Euro-American S;Orphans None
Chromosome 1227216 1227217 lineage4.8 T Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 1227517 1227518 lineage8 A Lineage 8 None None
Chromosome 1228066 1228067 lineage1.2.2.2 A Indo-Oceanic NA RD239
Chromosome 1229122 1229123 lineage6.3.3 G West-Africa 2 AFRI_1 RD702
Chromosome 1229179 1229180 lineage3.1.2.2 A East-African-Indian CAS RD750
Chromosome 1232495 1232496 lineage4.3.2.1 C Euro-American (LAM) LAM3 RD761
Chromosome 1233284 1233285 lineage4.2.2.2 A Euro-American (Ural) T;LAM7-TUR None
Chromosome 1233416 1233417 lineage4.1.1.3.1 G Euro-American (X-type) X1;X3 RD193
Chromosome 1234998 1234999 lineage4.4.1.1.1 A Euro-American S;Orphans None
Chromosome 1237817 1237818 lineage3.1.2.1 G East-African-Indian CAS2 RD750
Chromosome 1239077 1239078 lineage4.3.4.2.1 A Euro-American (LAM) LAM11 RD174
Chromosome 1244258 1244259 lineage3.1.3 C East-African-Indian CAS RD750
Chromosome 1245274 1245275 lineage1.2.2.1 T Indo-Oceanic NA RD239
Chromosome 1249770 1249771 lineage1.1.3.1 A Indo-Oceanic NA RD239
Chromosome 1250339 1250340 lineage4 A Euro-American LAM;T;S;X;H None
Chromosome 1251954 1251955 lineage4.3.4.1 T Euro-American (LAM) LAM1;LAM2 RD174
Chromosome 1256805 1256806 lineage4.1.1 T Euro-American (X-type) X1;X2;X3 None
Chromosome 1261055 1261056 lineage1.1.1 T Indo-Oceanic EAI4;EAI5 RD239
Chromosome 1267405 1267406 lineage6.1.1 T West-Africa 2 AFRI_1 RD702
Chromosome 1273070 1273071 lineage4.8 C Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 1274334 1274335 lineage4.3.4.1 A Euro-American (LAM) LAM1;LAM2 RD174
Chromosome 1286665 1286666 lineage4.1.1.2 A Euro-American (X-type) X1 None
Chromosome 1288125 1288126 La1.8.X-unk6 C M.bovis None None
Chromosome 1288697 1288698 lineage2.2 A East-Asian (Beijing) Beijing-RD207 RD105;RD207
Chromosome 1289554 1289555 lineage4.6.2 G Euro-American T;LAM RD726
Chromosome 1293120 1293121 lineage1.1.3 T Indo-Oceanic EAI6 RD239
Chromosome 1297083 1297084 lineage7 A Lineage 7 None None
Chromosome 1297326 1297327 lineage4.3.4 A Euro-American (LAM) LAM RD174
Chromosome 1297980 1297981 lineage4.4.1.2 C Euro-American T1 None
Chromosome 1301570 1301571 lineage5.1.3 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 1311085 1311086 lineage4.3.1 G Euro-American (LAM) LAM9 None
Chromosome 1311442 1311443 lineage5.1.4 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 1315745 1315746 lineage1.2.1 A Indo-Oceanic EAI2 RD239
Chromosome 1317654 1317655 lineage2 T East-Asian Beijing RD105
Chromosome 1317795 1317796 lineage5.1.2 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 1321209 1321210 lineage4.4.1.1 T Euro-American S;Orphans None
Chromosome 1331186 1331187 lineage4.6.5 C Euro-American T;LAM None
Chromosome 1334259 1334260 lineage4.3.2.1 A Euro-American (LAM) LAM3 RD761
Chromosome 1335912 1335913 lineage4.4.1.1.1 G Euro-American S;Orphans None
Chromosome 1345103 1345104 lineage1.1.3.1 A Indo-Oceanic NA RD239
Chromosome 1352349 1352350 lineage4.6.2.2 T Euro-American (Cameroon) LAM10-CAM RD726
Chromosome 1353772 1353773 lineage1.1.3.1 G Indo-Oceanic NA RD239
Chromosome 1358196 1358197 lineage4.6.5 T Euro-American T;LAM None
Chromosome 1358421 1358422 La1.8.2 T M.bovis None None
Chromosome 1361219 1361220 lineage3.1.3 T East-African-Indian CAS RD750
Chromosome 1363193 1363194 lineage1.2.1 A Indo-Oceanic EAI2 RD239
Chromosome 1363985 1363986 lineage4.3.1.1 T Euro-American (LAM) LAM9 None
Chromosome 1364433 1364434 lineage4.3.4.1 T Euro-American (LAM) LAM1;LAM2 RD174
Chromosome 1365429 1365430 lineage1.2.2 C Indo-Oceanic EAI1 RD239
Chromosome 1365894 1365895 lineage7 A Lineage 7 None None
Chromosome 1369926 1369927 lineage1.1.1.1 T Indo-Oceanic EAI4;ZERO RD239
Chromosome 1372001 1372002 lineage6 T West-Africa 2 AFRI_1 RD702
Chromosome 1378724 1378725 lineage3.1.1 C East-African-Indian CAS1-Kili RD750
Chromosome 1391867 1391868 lineage4.6.1.2 A Euro-American T2 RD724
Chromosome 1396921 1396922 lineage4.9 T Euro-American (H37Rv-like) T1 None
Chromosome 1401049 1401050 La1.7.X-unk4 T M.bovis None None
Chromosome 1405847 1405848 lineage3.1.3 T East-African-Indian CAS RD750
Chromosome 1406311 1406312 lineage1.2.1.2.1 G Indo-Oceanic NA RD239
Chromosome 1421108 1421109 lineage4.3.1 G Euro-American (LAM) LAM9 None
Chromosome 1427066 1427067 La1.7.X-unk5 G M.bovis None None
Chromosome 1434318 1434319 lineage5.1.3 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 1435762 1435763 lineage4.5 T Euro-American H;T RD122
Chromosome 1436229 1436230 lineage6.1.3 G West-Africa 2 AFRI_1 RD702
Chromosome 1436781 1436782 lineage3.1.3 A East-African-Indian CAS RD750
Chromosome 1439331 1439332 lineage4.6.1.1 T Euro-American T2-Uganda RD724
Chromosome 1442108 1442109 lineage4.6.4 T Euro-American T;LAM None
Chromosome 1444654 1444655 lineage4.8.2 T Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 1449010 1449011 lineage6.2.2 A West-Africa 2 AFRI_1 RD702
Chromosome 1450315 1450316 lineage3 T East-African-Indian CAS RD750
Chromosome 1450462 1450463 lineage6.1.1 T West-Africa 2 AFRI_1 RD702
Chromosome 1451541 1451542 lineage4.3.2.1 T Euro-American (LAM) LAM3 RD761
Chromosome 1452070 1452071 lineage4.3 A Euro-American (LAM) mainly-LAM None
Chromosome 1454191 1454192 lineage6.2.1 G West-Africa 2 AFRI_1 RD702
Chromosome 1455779 1455780 lineage4.2.2.1 C Euro-American LAM7-TUR None
Chromosome 1459256 1459257 lineage6.2.2 T West-Africa 2 AFRI_1 RD702
Chromosome 1463775 1463776 lineage7 T Lineage 7 None None
Chromosome 1466778 1466779 lineage4.2 T Euro-American H;T;LAM None
Chromosome 1467752 1467753 lineage4.6.2 A Euro-American T;LAM RD726
Chromosome 1478221 1478222 lineage1.2.1 G Indo-Oceanic EAI2 RD239
Chromosome 1487795 1487796 lineage4.2.2 A Euro-American (Ural) T;LAM7-TUR None
Chromosome 1491274 1491275 lineage1.1.3 A Indo-Oceanic EAI6 RD239
Chromosome 1492048 1492049 lineage1.2.2.2 T Indo-Oceanic NA RD239
Chromosome 1492960 1492961 lineage5.1.4 A West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 1494230 1494231 lineage4.4.1.2 A Euro-American T1 None
Chromosome 1498303 1498304 lineage4.6.5 C Euro-American T;LAM None
Chromosome 1501714 1501715 lineage5.1 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 1501741 1501742 lineage5.1 A West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 1505805 1505806 lineage5 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 1511459 1511460 lineage2.2.2 T East-Asian (Beijing) Beijing-RD105/RD207 RD105;RD207
Chromosome 1523574 1523575 lineage3.1.1 G East-African-Indian CAS1-Kili RD750
Chromosome 1526099 1526100 lineage1.1.1.1 G Indo-Oceanic EAI4;ZERO RD239
Chromosome 1526838 1526839 lineage4.2.1.1 A Euro-American (TUR) H3;H4 None
Chromosome 1534537 1534538 lineage4.6.2 T Euro-American T;LAM RD726
Chromosome 1534928 1534929 La1.8.1 T M.bovis None None
Chromosome 1539298 1539299 lineage6.3.3 T West-Africa 2 AFRI_1 RD702
Chromosome 1541213 1541214 lineage4.3.1 C Euro-American (LAM) LAM9 None
Chromosome 1543873 1543874 lineage5.1.2 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 1547497 1547498 lineage4.8.1 A Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 1551193 1551194 lineage6.2.3 A West-Africa 2 AFRI_1 RD702
Chromosome 1552836 1552837 La1.5 T M.bovis None None
Chromosome 1553854 1553855 lineage1.2.1 T Indo-Oceanic EAI2 RD239
Chromosome 1553875 1553876 lineage4.6.5 G Euro-American T;LAM None
Chromosome 1555431 1555432 lineage5 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 1556017 1556018 lineage5.1.5 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 1556429 1556430 lineage3.1.1 G East-African-Indian CAS1-Kili RD750
Chromosome 1560776 1560777 lineage5.1.3 A West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 1560911 1560912 lineage1 A Indo-Oceanic EAI RD239
Chromosome 1561244 1561245 lineage7 T Lineage 7 None None
Chromosome 1564798 1564799 lineage4.1.3 T Euro-American T;X;H None
Chromosome 1565424 1565425 M.canetti A M.canetti None None
Chromosome 1565565 1565566 lineage2.2.2 T East-Asian (Beijing) Beijing-RD105/RD207 RD105;RD207
Chromosome 1567984 1567985 lineage1.2.1.2 G Indo-Oceanic NA RD239
Chromosome 1568017 1568018 lineage4.2 T Euro-American H;T;LAM None
Chromosome 1577240 1577241 lineage2 A East-Asian Beijing RD105
Chromosome 1577845 1577846 lineage6.2 A West-Africa 2 AFRI_1 RD702
Chromosome 1578211 1578212 lineage5 C West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 1581703 1581704 lineage4.6.5 C Euro-American T;LAM None
Chromosome 1588745 1588746 lineage6.3.2 T West-Africa 2 AFRI_1 RD702
Chromosome 1588886 1588887 lineage4.6.2.1 C Euro-American T3 RD726
Chromosome 1590554 1590555 lineage1 T Indo-Oceanic EAI RD239
Chromosome 1591544 1591545 lineage3.1.1 T East-African-Indian CAS1-Kili RD750
Chromosome 1592014 1592015 lineage4.3.2.1 T Euro-American (LAM) LAM3 RD761
Chromosome 1594847 1594848 lineage4.8.1 A Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 1597404 1597405 lineage4.6.1 A Euro-American (Uganda) T2 RD724
Chromosome 1597695 1597696 lineage4.6.1.1 A Euro-American T2-Uganda RD724
Chromosome 1599075 1599076 lineage5.1.2 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 1599995 1599996 lineage1.1.3.1 T Indo-Oceanic NA RD239
Chromosome 1601415 1601416 lineage6.3.3 T West-Africa 2 AFRI_1 RD702
Chromosome 1619840 1619841 lineage1.2.2.2 A Indo-Oceanic NA RD239
Chromosome 1620581 1620582 lineage4.3.1.1 C Euro-American (LAM) LAM9 None
Chromosome 1623788 1623789 lineage1.2.1.2.1 T Indo-Oceanic NA RD239
Chromosome 1625768 1625769 lineage4.6.2.1 A Euro-American T3 RD726
Chromosome 1626589 1626590 lineage6.2 A West-Africa 2 AFRI_1 RD702
Chromosome 1639225 1639226 lineage3.1.1 T East-African-Indian CAS1-Kili RD750
Chromosome 1645598 1645599 lineage4.5 T Euro-American H;T RD122
Chromosome 1645619 1645620 lineage6.3.2 A West-Africa 2 AFRI_1 RD702
Chromosome 1647806 1647807 lineage4.3.1.1 C Euro-American (LAM) LAM9 None
Chromosome 1649264 1649265 lineage5 A West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 1651062 1651063 lineage1.2.2.1 G Indo-Oceanic NA RD239
Chromosome 1652215 1652216 lineage4.2.1.1 G Euro-American (TUR) H3;H4 None
Chromosome 1659665 1659666 lineage4.6.4 A Euro-American T;LAM None
Chromosome 1660439 1660440 lineage4.2.1.1 A Euro-American (TUR) H3;H4 None
Chromosome 1667069 1667070 lineage6.3.3 A West-Africa 2 AFRI_1 RD702
Chromosome 1670813 1670814 lineage4.2 T Euro-American H;T;LAM None
Chromosome 1672807 1672808 lineage1.2.2.2 A Indo-Oceanic NA RD239
Chromosome 1692068 1692069 lineage2.2.1.2 G East-Asian (Beijing) Beijing-RD142 RD105;RD207;RD181;RD142
Chromosome 1692639 1692640 lineage5.1.1 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 1695036 1695037 lineage2.2 A East-Asian (Beijing) Beijing-RD207 RD105;RD207
Chromosome 1695790 1695791 lineage5.1.1 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 1697459 1697460 lineage1.1.3 T Indo-Oceanic EAI6 RD239
Chromosome 1701476 1701477 lineage4.1.2.1.1 G Euro-American (Haarlem) T1;H1 RD182
Chromosome 1715827 1715828 lineage4.3.1 C Euro-American (LAM) LAM9 None
Chromosome 1724119 1724120 lineage4.3.4.2 A Euro-American (LAM) LAM1;LAM4;LAM11 RD174
Chromosome 1726540 1726541 lineage4.6.1.2 A Euro-American T2 RD724
Chromosome 1733617 1733618 lineage5.1 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 1740534 1740535 lineage4.3.4.2.1 A Euro-American (LAM) LAM11 RD174
Chromosome 1741099 1741100 lineage5.1.3 A West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 1750464 1750465 lineage1.1.1.1 C Indo-Oceanic EAI4;ZERO RD239
Chromosome 1759251 1759252 lineage4.9 G Euro-American (H37Rv-like) T1 None
Chromosome 1764224 1764225 lineage3 T East-African-Indian CAS RD750
Chromosome 1764807 1764808 lineage4.8.2 T Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 1765766 1765767 La1.7.X-unk4 C M.bovis None None
Chromosome 1771319 1771320 lineage4.3.4.2 A Euro-American (LAM) LAM1;LAM4;LAM11 RD174
Chromosome 1775673 1775674 lineage6.2 T West-Africa 2 AFRI_1 RD702
Chromosome 1778556 1778557 lineage4.3.2 T Euro-American (LAM) LAM3 None
Chromosome 1798560 1798561 lineage4.6.4 T Euro-American T;LAM None
Chromosome 1799177 1799178 lineage1.1.3.3 A Indo-Oceanic NA RD239
Chromosome 1799920 1799921 lineage5 A West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 1803958 1803959 lineage4.4.1.2 T Euro-American T1 None
Chromosome 1808123 1808124 lineage4.4.1.2 C Euro-American T1 None
Chromosome 1811963 1811964 lineage6 A West-Africa 2 AFRI_1 RD702
Chromosome 1819030 1819031 lineage5.1.4 C West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 1821773 1821774 lineage1.2.2.1 T Indo-Oceanic NA RD239
Chromosome 1841960 1841961 lineage6.3.2 A West-Africa 2 AFRI_1 RD702
Chromosome 1842236 1842237 lineage6.3.2 G West-Africa 2 AFRI_1 RD702
Chromosome 1846091 1846092 lineage5.1 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 1847810 1847811 lineage4.3.4 C Euro-American (LAM) LAM RD174
Chromosome 1849050 1849051 lineage2.2 T East-Asian (Beijing) Beijing-RD207 RD105;RD207
Chromosome 1850118 1850119 lineage4.1.1.1 T Euro-American (X-type) X2 RD183
Chromosome 1853673 1853674 lineage4.4.1.1.1 A Euro-American S;Orphans None
Chromosome 1862120 1862121 lineage3.1.2.2 T East-African-Indian CAS RD750
Chromosome 1867706 1867707 lineage6 T West-Africa 2 AFRI_1 RD702
Chromosome 1870172 1870173 lineage6.3 A West-Africa 2 AFRI_1 RD702
Chromosome 1872210 1872211 lineage4.2 A Euro-American H;T;LAM None
Chromosome 1875206 1875207 lineage4.1 T Euro-American T;X;H None
Chromosome 1877861 1877862 lineage4.1.2.1.1 T Euro-American (Haarlem) T1;H1 RD182
Chromosome 1879700 1879701 lineage5.1.2 C West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 1880849 1880850 lineage4.2.2.2 A Euro-American (Ural) T;LAM7-TUR None
Chromosome 1882572 1882573 lineage4.9.1 G Euro-American (H37Rv-like) T1 None
Chromosome 1882816 1882817 lineage6.1 A West-Africa 2 AFRI_1 RD702
Chromosome 1885494 1885495 lineage1.2.2.1 A Indo-Oceanic NA RD239
Chromosome 1891255 1891256 lineage5.1.1 G West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 1891387 1891388 lineage2.2.1.1 G East-Asian (Beijing) Beijing-RD150 RD105;RD207;RD181;RD150
Chromosome 1897937 1897938 lineage1.2.1.2.1 A Indo-Oceanic NA RD239
Chromosome 1901923 1901924 lineage4.5 C Euro-American H;T RD122
Chromosome 1903049 1903050 lineage1.2.1.2.1 T Indo-Oceanic NA RD239
Chromosome 1903546 1903547 lineage5.1.3 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 1906077 1906078 lineage2.2.1 G East-Asian (Beijing) Beijing-RD181 RD105;RD207;RD181
Chromosome 1907295 1907296 lineage4.9 G Euro-American (H37Rv-like) T1 None
Chromosome 1908786 1908787 lineage6.2.3 A West-Africa 2 AFRI_1 RD702
Chromosome 1912267 1912268 lineage5.1.1 C West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 1914216 1914217 lineage3.1.2 A East-African-Indian CAS;CAS2 RD750
Chromosome 1919626 1919627 lineage3.1.3 A East-African-Indian CAS RD750
Chromosome 1919735 1919736 lineage4.2.2.1 G Euro-American LAM7-TUR None
Chromosome 1924764 1924765 lineage1.1.1 C Indo-Oceanic EAI4;EAI5 RD239
Chromosome 1925135 1925136 lineage3 A East-African-Indian CAS RD750
Chromosome 1931218 1931219 lineage4.1.2.1 A Euro-American (Haarlem) T1;H1 RD182
Chromosome 1940610 1940611 lineage4.9.1 C Euro-American (H37Rv-like) T1 None
Chromosome 1947281 1947282 lineage2.2.1.1 G East-Asian (Beijing) Beijing-RD150 RD105;RD207;RD181;RD150
Chromosome 1952600 1952601 lineage4.1.1 T Euro-American (X-type) X1;X2;X3 None
Chromosome 1965132 1965133 lineage4.4.2 T Euro-American T1;T2 None
Chromosome 1976013 1976014 lineage1.1.3.3 T Indo-Oceanic NA RD239
Chromosome 1978430 1978431 La1.7.X-unk5 T M.bovis None None
Chromosome 1980651 1980652 lineage2 T East-Asian Beijing RD105
Chromosome 1980870 1980871 lineage4.5 C Euro-American H;T RD122
Chromosome 1985033 1985034 La1.2 C M.bovis None None
Chromosome 1985572 1985573 lineage4.2.2.1 A Euro-American LAM7-TUR None
Chromosome 2016285 2016286 lineage1.1.3.3 A Indo-Oceanic NA RD239
Chromosome 2020119 2020120 lineage3.1.2.1 T East-African-Indian CAS2 RD750
Chromosome 2020143 2020144 lineage4.1 A Euro-American T;X;H None
Chromosome 2022125 2022126 lineage4.4.1.1 C Euro-American S;Orphans None
Chromosome 2022867 2022868 lineage4.9 T Euro-American (H37Rv-like) T1 None
Chromosome 2024412 2024413 lineage6.3.1 T West-Africa 2 AFRI_1 RD702
Chromosome 2027616 2027617 La1.2.BCG A M.bovis BCG None
Chromosome 2033747 2033748 lineage4.6.1 C Euro-American (Uganda) T2 RD724
Chromosome 2033889 2033890 lineage4.4.1 T Euro-American (S-type) S;T None
Chromosome 2043079 2043080 M.canetti G M.canetti None None
Chromosome 2053681 2053682 lineage4.3 T Euro-American (LAM) mainly-LAM None
Chromosome 2054804 2054805 lineage4.1.1.3 A Euro-American (X-type) X1;X3 RD193
Chromosome 2058446 2058447 lineage4.6.1.2 A Euro-American T2 RD724
Chromosome 2063105 2063106 lineage1.1.1 T Indo-Oceanic EAI4;EAI5 RD239
Chromosome 2066473 2066474 lineage1.1.3.3 C Indo-Oceanic NA RD239
Chromosome 2066632 2066633 lineage4.1.2 G Euro-American T;H None
Chromosome 2073604 2073605 lineage4.8.2 C Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 2077252 2077253 lineage4.3.3 A Euro-American (LAM) LAM;T RD115
Chromosome 2078023 2078024 lineage1.1.1 A Indo-Oceanic EAI4;EAI5 RD239
Chromosome 2078245 2078246 lineage2.2.1 G East-Asian (Beijing) Beijing-RD181 RD105;RD207;RD181
Chromosome 2080940 2080941 lineage4.1.1.1 A Euro-American (X-type) X2 RD183
Chromosome 2083682 2083683 lineage5.2 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 2091596 2091597 lineage5.2 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 2093997 2093998 lineage4.5 T Euro-American H;T RD122
Chromosome 2105064 2105065 lineage4.6.2.1 T Euro-American T3 RD726
Chromosome 2108385 2108386 lineage5.2 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 2112831 2112832 lineage2.2 C East-Asian (Beijing) Beijing-RD207 RD105;RD207
Chromosome 2116662 2116663 lineage4.3.1.1 T Euro-American (LAM) LAM9 None
Chromosome 2153245 2153246 lineage4.2.2.2 G Euro-American (Ural) T;LAM7-TUR None
Chromosome 2156846 2156847 lineage4.2.2.2 A Euro-American (Ural) T;LAM7-TUR None
Chromosome 2158581 2158582 lineage4.1.1 A Euro-American (X-type) X1;X2;X3 None
Chromosome 2173057 2173058 lineage5.1.5 A West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 2183680 2183681 La1.4 A M.bovis None None
Chromosome 2184780 2184781 lineage4.6.1 T Euro-American (Uganda) T2 RD724
Chromosome 2185537 2185538 lineage3.1.2.1 A East-African-Indian CAS2 RD750
Chromosome 2191656 2191657 lineage4.4.2 T Euro-American T1;T2 None
Chromosome 2194203 2194204 La2 G M.caprae None None
Chromosome 2198181 2198182 lineage6.3.1 T West-Africa 2 AFRI_1 RD702
Chromosome 2199683 2199684 lineage4.3.4.1 A Euro-American (LAM) LAM1;LAM2 RD174
Chromosome 2202499 2202500 lineage2.2 T East-Asian (Beijing) Beijing-RD207 RD105;RD207
Chromosome 2208142 2208143 lineage4.1.1.3.1 C Euro-American (X-type) X1;X3 RD193
Chromosome 2212761 2212762 lineage4.8 T Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 2215711 2215712 lineage1.2.1.2.1 A Indo-Oceanic NA RD239
Chromosome 2225514 2225515 lineage4.6.2.1 A Euro-American T3 RD726
Chromosome 2239383 2239384 lineage6.3.3 A West-Africa 2 AFRI_1 RD702
Chromosome 2240715 2240716 lineage5.2 A West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 2243434 2243435 La1.8.X-unk6 A M.bovis None None
Chromosome 2244769 2244770 lineage4.1.2.1 A Euro-American (Haarlem) T1;H1 RD182
Chromosome 2245074 2245075 lineage4.4.2 T Euro-American T1;T2 None
Chromosome 2245498 2245499 lineage3.1.2.1 T East-African-Indian CAS2 RD750
Chromosome 2248162 2248163 lineage6.3.3 C West-Africa 2 AFRI_1 RD702
Chromosome 2249402 2249403 lineage4.3.2 T Euro-American (LAM) LAM3 None
Chromosome 2253452 2253453 lineage4.1 C Euro-American T;X;H None
Chromosome 2259578 2259579 lineage2.2.1.2 G East-Asian (Beijing) Beijing-RD142 RD105;RD207;RD181;RD142
Chromosome 2271142 2271143 lineage3.1.2.1 A East-African-Indian CAS2 RD750
Chromosome 2271442 2271443 lineage5.1.2 G West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 2271554 2271555 La1.1 A M.bovis None None
Chromosome 2273626 2273627 lineage4.6.1 T Euro-American (Uganda) T2 RD724
Chromosome 2291556 2291557 La1.7.X-unk5 G M.bovis None None
Chromosome 2311356 2311357 lineage1.1.1.1 A Indo-Oceanic EAI4;ZERO RD239
Chromosome 2315589 2315590 lineage5.1.2 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 2326191 2326192 lineage1.1.1.1 T Indo-Oceanic EAI4;ZERO RD239
Chromosome 2331060 2331061 lineage4.6.1.1 T Euro-American T2-Uganda RD724
Chromosome 2356011 2356012 lineage4.4 A Euro-American S;T None
Chromosome 2358915 2358916 lineage4.4 T Euro-American S;T None
Chromosome 2369117 2369118 lineage4.6.2.2 A Euro-American (Cameroon) LAM10-CAM RD726
Chromosome 2369186 2369187 lineage1.1.3.2 T Indo-Oceanic NA RD239
Chromosome 2369459 2369460 lineage1.1.3.2 A Indo-Oceanic NA RD239
Chromosome 2369970 2369971 lineage4.6 G Euro-American T;LAM None
Chromosome 2377784 2377785 lineage4.6.1.1 T Euro-American T2-Uganda RD724
Chromosome 2378812 2378813 lineage4.7 G Euro-American (mainly T) T1;T5 None
Chromosome 2382644 2382645 lineage5.1 A West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 2382829 2382830 La2 A M.caprae None None
Chromosome 2408441 2408442 lineage6.1.2 A West-Africa 2 AFRI_1 RD702
Chromosome 2410937 2410938 lineage4.4.1.2 T Euro-American T1 None
Chromosome 2412583 2412584 lineage1.1.1.1 A Indo-Oceanic EAI4;ZERO RD239
Chromosome 2415041 2415042 lineage3.1.2.2 T East-African-Indian CAS RD750
Chromosome 2416148 2416149 lineage5.2 G West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 2417280 2417281 lineage4.8.2 A Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 2418553 2418554 lineage1.1.3.2 A Indo-Oceanic NA RD239
Chromosome 2420502 2420503 lineage4.2.2 G Euro-American (Ural) T;LAM7-TUR None
Chromosome 2428077 2428078 La1.4 G M.bovis None None
Chromosome 2428822 2428823 lineage5.1.5 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 2440952 2440953 lineage4.6.1 T Euro-American (Uganda) T2 RD724
Chromosome 2443187 2443188 lineage4.3.4.2 A Euro-American (LAM) LAM1;LAM4;LAM11 RD174
Chromosome 2450244 2450245 lineage4.1.3 A Euro-American T;X;H None
Chromosome 2454855 2454856 lineage4.1.1.3 T Euro-American (X-type) X1;X3 RD193
Chromosome 2467097 2467098 lineage3.1.1 C East-African-Indian CAS1-Kili RD750
Chromosome 2470626 2470627 lineage4.3.2.1 A Euro-American (LAM) LAM3 RD761
Chromosome 2470933 2470934 lineage1.1.1.1 A Indo-Oceanic EAI4;ZERO RD239
Chromosome 2473698 2473699 lineage4.1.2.1 T Euro-American (Haarlem) T1;H1 RD182
Chromosome 2475887 2475888 La1 G M.bovis None None
Chromosome 2478057 2478058 lineage5.1.3 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 2482887 2482888 lineage4.2.2 A Euro-American (Ural) T;LAM7-TUR None
Chromosome 2485233 2485234 lineage6.1.3 T West-Africa 2 AFRI_1 RD702
Chromosome 2485955 2485956 lineage5 A West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 2486341 2486342 lineage1.2.1.2.1 T Indo-Oceanic NA RD239
Chromosome 2488723 2488724 lineage4.1.2.1.1 G Euro-American (Haarlem) T1;H1 RD182
Chromosome 2494262 2494263 lineage4.6.1.2 A Euro-American T2 RD724
Chromosome 2503624 2503625 lineage4.3 T Euro-American (LAM) mainly-LAM None
Chromosome 2505084 2505085 lineage2.2 A East-Asian (Beijing) Beijing-RD207 RD105;RD207
Chromosome 2516157 2516158 lineage4.6.3 G Euro-American T;LAM None
Chromosome 2516364 2516365 lineage4.6.3 C Euro-American T;LAM None
Chromosome 2527675 2527676 lineage4.3.4 A Euro-American (LAM) LAM RD174
Chromosome 2546349 2546350 lineage6.3.3 T West-Africa 2 AFRI_1 RD702
Chromosome 2553394 2553395 La1.7.1 A M.bovis None None
Chromosome 2563400 2563401 lineage6.1.1 G West-Africa 2 AFRI_1 RD702
Chromosome 2565445 2565446 lineage5.1.4 A West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 2574021 2574022 lineage4.1 T Euro-American T;X;H None
Chromosome 2585857 2585858 lineage4.1.1.1 A Euro-American (X-type) X2 RD183
Chromosome 2594631 2594632 La1.8.2 A M.bovis None None
Chromosome 2597695 2597696 lineage4.5 T Euro-American H;T RD122
Chromosome 2599820 2599821 lineage4.3.4 A Euro-American (LAM) LAM RD174
Chromosome 2602159 2602160 lineage6.3.1 A West-Africa 2 AFRI_1 RD702
Chromosome 2603796 2603797 lineage4.1.1 A Euro-American (X-type) X1;X2;X3 None
Chromosome 2612299 2612300 La1 T M.bovis None None
Chromosome 2614030 2614031 lineage4.3.1.1 G Euro-American (LAM) LAM9 None
Chromosome 2622401 2622402 lineage1.1.2 A Indo-Oceanic EAI3;EAI5 RD239
Chromosome 2639867 2639868 lineage1.2.1.2 G Indo-Oceanic NA RD239
Chromosome 2640368 2640369 lineage4.1.2.1.1 A Euro-American (Haarlem) T1;H1 RD182
Chromosome 2640806 2640807 lineage2.2.2 A East-Asian (Beijing) Beijing-RD105/RD207 RD105;RD207
Chromosome 2640959 2640960 lineage1.2.1.1 T Indo-Oceanic NA RD239
Chromosome 2641657 2641658 lineage6.3.1 C West-Africa 2 AFRI_1 RD702
Chromosome 2649854 2649855 lineage4.3.2 A Euro-American (LAM) LAM3 None
Chromosome 2655823 2655824 La1.6 C M.bovis None None
Chromosome 2669114 2669115 La1.5 A M.bovis None None
Chromosome 2671060 2671061 lineage4.1 A Euro-American T;X;H None
Chromosome 2671676 2671677 lineage6.3.1 T West-Africa 2 AFRI_1 RD702
Chromosome 2701537 2701538 La2 A M.caprae None None
Chromosome 2702177 2702178 La1.7.1 A M.bovis None None
Chromosome 2715124 2715125 La1.8 C M.bovis None None
Chromosome 2724781 2724782 lineage4.1.2.1 T Euro-American (Haarlem) T1;H1 RD182
Chromosome 2729452 2729453 lineage4.3.4.2.1 A Euro-American (LAM) LAM11 RD174
Chromosome 2729453 2729454 lineage3.1.2 T East-African-Indian CAS;CAS2 RD750
Chromosome 2731554 2731555 La2 C M.caprae None None
Chromosome 2737200 2737201 lineage1.2.1.2.1 C Indo-Oceanic NA RD239
Chromosome 2737452 2737453 lineage2.1 C East-Asian (non-Beijing) None None
Chromosome 2738220 2738221 lineage3 A East-African-Indian CAS RD750
Chromosome 2738351 2738352 lineage1.1.3.3 T Indo-Oceanic NA RD239
Chromosome 2739086 2739087 lineage4.1.1.3.1 T Euro-American (X-type) X1;X3 RD193
Chromosome 2744387 2744388 lineage3.1.1 A East-African-Indian CAS1-Kili RD750
Chromosome 2748086 2748087 lineage4.2 A Euro-American H;T;LAM None
Chromosome 2749451 2749452 lineage6.2 A West-Africa 2 AFRI_1 RD702
Chromosome 2750051 2750052 lineage9 A Lineage 9 None None
Chromosome 2752853 2752854 lineage4.1.1 A Euro-American (X-type) X1;X2;X3 None
Chromosome 2755468 2755469 lineage4.6.4 A Euro-American T;LAM None
Chromosome 2758267 2758268 lineage6.3 T West-Africa 2 AFRI_1 RD702
Chromosome 2763623 2763624 lineage1.2.2 A Indo-Oceanic EAI1 RD239
Chromosome 2781383 2781384 lineage4.6.2.1 G Euro-American T3 RD726
Chromosome 2782139 2782140 lineage4.8.3 A Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 2782497 2782498 lineage3 A East-African-Indian CAS RD750
Chromosome 2807763 2807764 La1.7.X-unk4 A M.bovis None None
Chromosome 2809249 2809250 lineage4.8 T Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 2814960 2814961 lineage4.3.3 A Euro-American (LAM) LAM;T RD115
Chromosome 2824838 2824839 lineage4.1.1.1 T Euro-American (X-type) X2 RD183
Chromosome 2825465 2825466 lineage4 G Euro-American LAM;T;S;X;H None
Chromosome 2825580 2825581 lineage2.2.1 G East-Asian (Beijing) Beijing-RD181 RD105;RD207;RD181
Chromosome 2826038 2826039 lineage2.2.1.2 C East-Asian (Beijing) Beijing-RD142 RD105;RD207;RD181;RD142
Chromosome 2834423 2834424 La1.2.BCG A M.bovis BCG None
Chromosome 2840848 2840849 lineage1.2.1.2 C Indo-Oceanic NA RD239
Chromosome 2844013 2844014 lineage4.1.4 A Euro-American T;X;H None
Chromosome 2844688 2844689 lineage4.3.2.1 C Euro-American (LAM) LAM3 RD761
Chromosome 2847190 2847191 lineage1.2.1.1 A Indo-Oceanic NA RD239
Chromosome 2847736 2847737 lineage6 A West-Africa 2 AFRI_1 RD702
Chromosome 2848134 2848135 La1.6 A M.bovis None None
Chromosome 2853154 2853155 La1.8 A M.bovis None None
Chromosome 2859146 2859147 lineage5 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 2868924 2868925 lineage4.4 A Euro-American S;T None
Chromosome 2871250 2871251 lineage4.1.2.1 A Euro-American (Haarlem) T1;H1 RD182
Chromosome 2873373 2873374 lineage4.3.4.2.1 A Euro-American (LAM) LAM11 RD174
Chromosome 2874343 2874344 lineage3.1.2.2 A East-African-Indian CAS RD750
Chromosome 2875882 2875883 lineage4.6.2.2 T Euro-American (Cameroon) LAM10-CAM RD726
Chromosome 2877697 2877698 lineage6.3.1 T West-Africa 2 AFRI_1 RD702
Chromosome 2882342 2882343 lineage4.2.1 A Euro-American (TUR) H3;H4 None
Chromosome 2890667 2890668 La1.8.1 T M.bovis None None
Chromosome 2891378 2891379 lineage2.2.1.1 C East-Asian (Beijing) Beijing-RD150 RD105;RD207;RD181;RD150
Chromosome 2892167 2892168 lineage4.7 A Euro-American (mainly T) T1;T5 None
Chromosome 2893700 2893701 lineage4.6.4 A Euro-American T;LAM None
Chromosome 2897527 2897528 lineage1 A Indo-Oceanic EAI RD239
Chromosome 2897683 2897684 lineage4.6.2.1 G Euro-American T3 RD726
Chromosome 2905504 2905505 lineage4.4.1 A Euro-American (S-type) S;T None
Chromosome 2906977 2906978 lineage4.1 T Euro-American T;X;H None
Chromosome 2907628 2907629 lineage4.3.2 A Euro-American (LAM) LAM3 None
Chromosome 2912515 2912516 La1 A M.bovis None None
Chromosome 2912745 2912746 lineage4.8.2 T Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 2913090 2913091 lineage4.4.2 T Euro-American T1;T2 None
Chromosome 2914905 2914906 lineage4.8.1 C Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 2919531 2919532 lineage4.6.4 G Euro-American T;LAM None
Chromosome 2923263 2923264 lineage4.2.2.2 A Euro-American (Ural) T;LAM7-TUR None
Chromosome 2940051 2940052 lineage5.3 A West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 2948296 2948297 La1.7.X-unk5 C M.bovis None None
Chromosome 2958569 2958570 lineage1.2.1.2.1 A Indo-Oceanic NA RD239
Chromosome 2963596 2963597 La1.7 A M.bovis None None
Chromosome 2980974 2980975 lineage4.1.1.3.1 A Euro-American (X-type) X1;X3 RD193
Chromosome 2989190 2989191 La1.8.2 C M.bovis None None
Chromosome 2989682 2989683 lineage1.1 T Indo-Oceanic EAI3;EAI4;EAI5;EAI6 RD239
Chromosome 2994186 2994187 lineage4 T Euro-American LAM;T;S;X;H None
Chromosome 2994963 2994964 lineage1.1.1.1 T Indo-Oceanic EAI4;ZERO RD239
Chromosome 3007523 3007524 lineage4.2.2.1 A Euro-American LAM7-TUR None
Chromosome 3015965 3015966 lineage4.6 A Euro-American T;LAM None
Chromosome 3023683 3023684 lineage3.1.1 A East-African-Indian CAS1-Kili RD750
Chromosome 3028657 3028658 lineage4.6.1.1 A Euro-American T2-Uganda RD724
Chromosome 3033643 3033644 La1.2 C M.bovis None None
Chromosome 3037135 3037136 lineage4.3.1 A Euro-American (LAM) LAM9 None
Chromosome 3038565 3038566 La1.5 A M.bovis None None
Chromosome 3048840 3048841 lineage4.6.4 A Euro-American T;LAM None
Chromosome 3072871 3072872 La1.6 A M.bovis None None
Chromosome 3093940 3093941 lineage6.3.1 G West-Africa 2 AFRI_1 RD702
Chromosome 3094576 3094577 lineage9 A Lineage 9 None None
Chromosome 3095341 3095342 La1.2.BCG C M.bovis BCG None
Chromosome 3097222 3097223 lineage5.1.4 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 3108168 3108169 lineage6.2.1 A West-Africa 2 AFRI_1 RD702
Chromosome 3129358 3129359 lineage4.1.1 T Euro-American (X-type) X1;X2;X3 None
Chromosome 3141826 3141827 lineage4.2.2.2 G Euro-American (Ural) T;LAM7-TUR None
Chromosome 3147315 3147316 lineage1.2.2.2 A Indo-Oceanic NA RD239
Chromosome 3147375 3147376 lineage4.4.1 A Euro-American (S-type) S;T None
Chromosome 3147510 3147511 lineage2.2.2 G East-Asian (Beijing) Beijing-RD105/RD207 RD105;RD207
Chromosome 3147741 3147742 lineage4.1.2 G Euro-American T;H None
Chromosome 3148166 3148167 M.canetti G M.canetti None None
Chromosome 3153182 3153183 lineage6.3 G West-Africa 2 AFRI_1 RD702
Chromosome 3168966 3168967 lineage4.8 A Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 3170459 3170460 lineage4.6 T Euro-American T;LAM None
Chromosome 3191026 3191027 lineage4.3 A Euro-American (LAM) mainly-LAM None
Chromosome 3193574 3193575 lineage5.1 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 3198495 3198496 lineage4.2 A Euro-American H;T;LAM None
Chromosome 3213254 3213255 lineage6 T West-Africa 2 AFRI_1 RD702
Chromosome 3213614 3213615 lineage4.1.1.2 A Euro-American (X-type) X1 None
Chromosome 3220221 3220222 lineage4.7 A Euro-American (mainly T) T1;T5 None
Chromosome 3231090 3231091 lineage4.1.1 A Euro-American (X-type) X1;X2;X3 None
Chromosome 3238747 3238748 lineage4.6.2.1 A Euro-American T3 RD726
Chromosome 3244323 3244324 La1.3 G M.bovis None None
Chromosome 3244673 3244674 lineage4.3.4.1 A Euro-American (LAM) LAM1;LAM2 RD174
Chromosome 3253570 3253571 lineage4.1.1.3.1 T Euro-American (X-type) X1;X3 RD193
Chromosome 3259271 3259272 lineage4.2.2.1 C Euro-American LAM7-TUR None
Chromosome 3270288 3270289 lineage4.7 A Euro-American (mainly T) T1;T5 None
Chromosome 3285944 3285945 lineage4.3.4.1 G Euro-American (LAM) LAM1;LAM2 RD174
Chromosome 3287787 3287788 M.canetti G M.canetti None None
Chromosome 3293314 3293315 lineage4.6.2.1 T Euro-American T3 RD726
Chromosome 3323664 3323665 lineage1.2.2.1 A Indo-Oceanic NA RD239
Chromosome 3332625 3332626 lineage4.6.1.2 T Euro-American T2 RD724
Chromosome 3337584 3337585 lineage1.1.3.3 A Indo-Oceanic NA RD239
Chromosome 3347069 3347070 La1.8.1 T M.bovis None None
Chromosome 3347479 3347480 lineage4.4.1.1 A Euro-American S;Orphans None
Chromosome 3348127 3348128 lineage6.3.3 T West-Africa 2 AFRI_1 RD702
Chromosome 3348869 3348870 lineage4.8.1 A Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 3349092 3349093 lineage4.4.1.2 C Euro-American T1 None
Chromosome 3354624 3354625 lineage4.6.2.2 A Euro-American (Cameroon) LAM10-CAM RD726
Chromosome 3360031 3360032 lineage4.3.1.1 A Euro-American (LAM) LAM9 None
Chromosome 3360151 3360152 lineage4.6.2.2 A Euro-American (Cameroon) LAM10-CAM RD726
Chromosome 3363400 3363401 lineage6.3.3 A West-Africa 2 AFRI_1 RD702
Chromosome 3367416 3367417 M.canetti A M.canetti None None
Chromosome 3367764 3367765 lineage4.9 G Euro-American (H37Rv-like) T1 None
Chromosome 3368283 3368284 lineage5.1.1 T West-Africa 1 AFRI_2;AFRI_3 RD711
Chromosome 3368414 3368415 lineage6.2.2 A West-Africa 2 AFRI_1 RD702
Chromosome 3370804 3370805 lineage9 C Lineage 9 None None
Chromosome 3383965 3383966 lineage4.2.2 C Euro-American (Ural) T;LAM7-TUR None
Chromosome 3387251 3387252 lineage1.2.1.1 A Indo-Oceanic NA RD239
Chromosome 3389921 3389922 lineage4.8.1 G Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 3396568 3396569 La3 A M.orygis None None
Chromosome 3402589 3402590 lineage6.1.2 A West-Africa 2 AFRI_1 RD702
Chromosome 3404882 3404883 lineage4.8.2 A Euro-American (mainly T) T1;T2;T3;T5 RD219
Chromosome 3414552 3414553 lineage9 A Lineage 9 None None
Chromosome 3414790 3414791 lineage4.3.2 C Euro-American (LAM) LAM3 None
Chromosome 3416733 3416734 lineage4.2.2.2 A Euro-American (Ural) T;LAM7-TUR None
Chromosome 3418329 3418330 lineage4.3 A Euro-American (LAM) mainly-LAM None
Chromosome 3419559 3419560 lineage4.4 T Euro-American S;T None
Chromosome 3423183 3423184 lineage4.3.3 T Euro-American (LAM) LAM;T RD115
Chromosome 3423938 3423939 La1.2.BCG A M.bovis BCG None
Chromosome 3433139 3433140 lineage6.3.3 A West-Africa 2 AFRI_1 RD702
Chromosome 3464052 3464053 lineage4.1.1.1 A Euro-American (X-type) X2 RD183
Chromosome 3469693 3469694 lineage4.2 T Euro-American H;T;LAM None
Chromosome 3471150 3471151 lineage4.2.1 A Euro-American (TUR) H3;H4 None
Chromosome 3488811 3488812 lineage6.1.1 T West-Africa 2 AFRI_1 RD702
Chromosome 3497368 3497369 lineage4.2.2.2 A Euro-American (Ural) T;LAM7-TUR None
Chromosome 3498197 3498198 lineage2.2.1 T East-Asian (Beijing) Beijing-RD181 RD105;RD207;RD181
Chromosome 3504929 3504930 lineage4.3.4.2 T Euro-American (LAM) LAM1;LAM4;LAM11 RD174
Chromosome 3557910 3557911 lineage3.1.2.1 T East-African-Indian CAS2 RD750
Chromosome 3562269 3562270 lineage4.6.1.1 C Euro-American T2-Uganda RD724