DESCRIPTION

Package: JAMS
Title: Just A Microbiology System
Version: 1.9.9
Authors@R: c(person("John", "McCulloch", email = "john.mcculloch@nih.gov", role = c("aut", "cre")),
    person("Jonathan", "Badger", email = "jonathan.badger@nih.gov", role = "aut"),
    person("Nikki", "Cannon", email = "nikkicannon7@gmail.com", role = "aut"),
    person("Richard", "Rodrigues", email = "richard.rodrigues@nih.gov", role = "ctb"),
    person("Michael", "Valencia", email = "michael.valencia@nih.gov", role = "ctb"),
    person("Jennifer", "Barb", email = "barbj@mail.nih.gov", role = "ctb"),
    person("Miriam", "Fernandes", email = "miriam.fernandes@nih.gov", role = "ctb"),
    person("Raquel", "Costa", email = "raquel.costa@nih.gov", role = "ctb"),
    person("Maria", "Clavijo-Salomon", email = "maria.clavijo-salomon@nih.gov", role = "ctb"),
    person("Ascharya", "Balaji", email = "ascharya.balaji@nih.gov", role = "ctb"),
    person("Lisa", "Crowson", email = "lisapcrowson@gmail.com", role = "ctb"),
    person("Thomas", "Mossington", email = "thomas.mossington@nih.gov", role = "ctb"),
    person("Colm", "O Huigin", email = "colm.ohuigin@nih.gov", role = "ctb"),
    person("Amiran", "Dzutsev", email = "amiran.dzutsev@nih.gov", role = "ctb"),
    person("Giorgio", "Trinchieri", email = "trinchig@niaid.nih.gov", role = "ctb"))
Description: Package for analysis of microbial (meta)genomic samples
Depends: R (>= 4.3.0), R.utils, parallel, optparse, futile.logger, benchmarkme, RCurl, Rtsne, ape, uwot, circlize, Polychrome, openxlsx, grid, gridExtra, tidyverse, ggplot2, ggrepel, wordcloud, gplots, vegan, matrixStats, Biostrings, seqinr, dada2, DECIPHER, SummarizedExperiment, ComplexHeatmap, HybridMTest, ggpubr, combinat, data.table, genefilter, gg3D, gtools, gtable, fastSave, Matrix
License: GPL
Encoding: UTF-8
Remotes: AckerDWM/gg3D
RoxygenNote: 7.3.2