CHANGELOG.md

Changes:

• [2023.8.28]:

  • Implemented pairwise_partial_correlation_with_basis_shrinkage using approaches from Erb et al. 2020 and Jin et al. 2022
  • Added correlation_to_partial_correlation and convariance_to_correlation functions.
  • Added checks to pairwise_aitchison_distance
  • Added is_integer_or_proportional to check_compositional

• [2023.8.5]:

  • Implemented pairwise_aitchison_distance
  • Reimplemented plot_compositional (i.e., plot_compositions now) and plot_prevalence from soothsayer

• [2023.7.20] - Added the following functions:

  • assert_acceptable_arguments
  • check_compositional
  • sparsity
  • number_of_components
  • prevalence_of_components
  • transform_closure
  • filter_data_highpass

• [2022.8.31] - Added support for Python v3.10

Future:

• Metrics:

  • Implement compositional_maximum_entropy (Weistuch et al. 2022)

• Plotting: (Optional: matplotlib & seaborn)

  • Simplex plots

• Misc:

  • Weight components (e.g. gene size)