.gitignore

# Datasets, files, etc.
data/**/*.pkl
data/**/*.torch
data/**/*.pt
data/**/*.pdb
data/**/prev/**
**/*.pdb
**/*.cif*
**/*.pkl
*.pt

# Local notekeeping and research
research/analysis/**/*.csv
research/analysis/**/figs/*.pdf
research/analysis/**/*.png
research/analysis/**/*.gif
research/analysis/**/*.pdf
research/analysis/**/*.svg
research/analysis/**/*.pse
research/notebooks/**/figs/*.pdf
scripts/proteinnet_failed_ids/**
errors/

# Model files
data/checkpoints/**
data/logs/**
*.tch
*.chkpt
console.txt
*.train

# Tools
wandb/
.idea/

# Torque HPC output files
*.o*-*

# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class
*.swp

# Distribution / packaging
.Python
env/
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
*.egg-info/
.installed.cfg
*.egg

# Sphinx documentation
docs/_build/

# Jupyter Notebook
**/.ipynb_checkpoints

/help.txt