From 328c0727c1080c15589cd30226339818a6286941 Mon Sep 17 00:00:00 2001 From: Nicholas Tolley Date: Tue, 21 Nov 2023 17:04:38 -0500 Subject: [PATCH] typo --- paper.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/paper.md b/paper.md index ecea77bcc..77e7ccaf0 100644 --- a/paper.md +++ b/paper.md @@ -159,7 +159,7 @@ All of the code associated with HNN-core has been extensively documented at mult # Use cases and quick example code of running a simulation -As summarized above, HNN-core reproduces the workflows and tutorials provided in the original GUI driven HNN software designed to investigate the origin of commonly observed MEG/EEG signals. The HNN-core [tutorials](https://jonescompneurolab.github.io/hnn-core/stable/auto_examples/index.html) include examples of how to simulate [ERPs](https://jonescompneurolab.github.io/hnn-core/stable/auto_examples/workflows/plot_simulate_evoked.html#sphx-glr-auto-examples-workflows-plot-simulate-evoked-py), as well low frequency rhythms such as [alpha](https://jonescompneurolab.github.io/hnn-core/stable/auto_examples/workflows/plot_simulate_alpha.html#sphx-glr-auto-examples-workflows-plot-simulate-alpha-py) (8-10 Hz), [beta](https://jonescompneurolab.github.io/hnn-core/stable/auto_examples/workflows/plot_simulate_alpha.html#sphx-glr-auto-examples-workflows-plot-simulate-alpha-py) (15-30 Hz), and [gamma](https://jonescompneurolab.github.io/hnn-core/stable/auto_examples/workflows/plot_simulate_gamma.html#sphx-glr-auto-examples-workflows-plot-simulate-gamma-py) (30-0 Hz). The tutorials also include an example of directly comparing simulations to real data (i.e., the [median nerve evoked response](https://jonescompneurolab.github.io/hnn-core/stable/auto_examples/workflows/plot_simulate_somato.html#sphx-glr-auto-examples-workflows-plot-simulate-somato-py)). We also provide short and targeted “How to” examples that describe how to use specific functionality, such as [plotting firing patterns](https://jonescompneurolab.github.io/hnn-core/stable/auto_examples/howto/plot_firing_pattern.html#sphx-glr-auto-examples-howto-plot-firing-pattern-py), or [recording extracellular LFPs](https://jonescompneurolab.github.io/hnn-core/stable/auto_examples/howto/plot_record_extracellular_potentials.html#sphx-glr-auto-examples-howto-plot-record-extracellular-potentials-py). +As summarized above, HNN-core reproduces the workflows and tutorials provided in the original GUI driven HNN software designed to investigate the origin of commonly observed MEG/EEG signals. The HNN-core [tutorials](https://jonescompneurolab.github.io/hnn-core/stable/auto_examples/index.html) include examples of how to simulate [ERPs](https://jonescompneurolab.github.io/hnn-core/stable/auto_examples/workflows/plot_simulate_evoked.html#sphx-glr-auto-examples-workflows-plot-simulate-evoked-py), as well low frequency rhythms such as [alpha](https://jonescompneurolab.github.io/hnn-core/stable/auto_examples/workflows/plot_simulate_alpha.html#sphx-glr-auto-examples-workflows-plot-simulate-alpha-py) (8-10 Hz), [beta](https://jonescompneurolab.github.io/hnn-core/stable/auto_examples/workflows/plot_simulate_alpha.html#sphx-glr-auto-examples-workflows-plot-simulate-alpha-py) (15-30 Hz), and [gamma](https://jonescompneurolab.github.io/hnn-core/stable/auto_examples/workflows/plot_simulate_gamma.html#sphx-glr-auto-examples-workflows-plot-simulate-gamma-py) (30-80 Hz). The tutorials also include an example of directly comparing simulations to real data (i.e., the [median nerve evoked response](https://jonescompneurolab.github.io/hnn-core/stable/auto_examples/workflows/plot_simulate_somato.html#sphx-glr-auto-examples-workflows-plot-simulate-somato-py)). We also provide short and targeted “How to” examples that describe how to use specific functionality, such as [plotting firing patterns](https://jonescompneurolab.github.io/hnn-core/stable/auto_examples/howto/plot_firing_pattern.html#sphx-glr-auto-examples-howto-plot-firing-pattern-py), or [recording extracellular LFPs](https://jonescompneurolab.github.io/hnn-core/stable/auto_examples/howto/plot_record_extracellular_potentials.html#sphx-glr-auto-examples-howto-plot-record-extracellular-potentials-py). In practice, users learn how to study the multi-scale origin of ERPs and low frequency oscillations by first following the tutorials in the HNN-GUI, and then recapitulating these tutorials in HNN-core. The tutorials provide an interactive investigation that gives intuition on how exogenous drives and other parameters in the model impact the outputs of the simulations. From there, users can test hypotheses about what parameters or sets of parameters need to be adjusted to account for their recorded data by directly comparing simulation output to data. Automated parameter inference can be performed to optimize parameters to produce a close fit (i.e., small root mean squared error) to current source ERPs, and more advanced parameter inference methods are in development.