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version.xml
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version.xml
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<package name='IndelDollo' version='0.0.1'>
<depends on='BEAST.base' atleast='2.7.3'/>
<depends on='BEAST.app' atleast='2.7.3'/>
<!-- for analysing pruned trees -->
<packageapp description="PrunedTreeAnnotator"
class="indeldollo.tools.PrunedTreeAnnotator"
args=""
/>
<!-- useful for reconstructing source trees from pruned trees: may be removed -->
<packageapp description="SourceTreeFromPrunedTrees"
class="indeldollo.tools.SourceTreeFromPrunedTrees"
args=""
/>
<service type="beast.base.core.BEASTInterface">
<provider classname="indeldollo.PrunedTreeLikelihood"/>
<provider classname="indeldollo.PrunedBeagleTreeLikelihood"/>
<provider classname="indeldollo.CognatePrunedTree"/>
<provider classname="indeldollo.CognatePrunedTreeData"/>
<provider classname="indeldollo.CognatePrunedTreeLogger"/>
<provider classname="indeldollo.DistanceFromRootLogger"/>
<provider classname="indeldollo.CognateBirthLogger"/>
<provider classname="indeldollo.CognateBirthModelInitialiser"/>
<provider classname="indeldollo.StochasticDolloPoissonPrior"/>
<provider classname="indeldollo.StochasticDolloTreeLikelihoodFast"/>
</service>
</package>