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20,000 records lead to segmentation fault #38
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I’m also seeing this on a recent iMac whereas an old MacBook Air works fine. Both running El Capitain.
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Oddly enough in our situation, the machine that works is a newer MacBook On (Sep-28-16| 9:31), LordGenome wrote:
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I wonder if has to do with differences in how compilers treated the |
Thanks for pushing in those changes, however I'm still seeing the same yoshikivazquezbaeza:SeqPrep@master$ git rev-parse HEAD PS - I like the false sense of hope, so I added -S, however removing On (Oct-04-16|13:20), John St. John wrote:
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I was trying to process a pair of files (attached) with the command below, and inevitably I will get a segmentation fault. When I shorten the size of the files, the program executes correctly.
Command:
SeqPrep -f r1.fastq -s seqprep_assembled.fastq.gz -r r2.fastq -y J -1 seqprep_unassembled_R1.fastq.gz -2 seqprep_unassembled_R2.fastq.gz Processing reads... |Segmentation fault: 11
Not sure what might be going on, the same command executes just fine in a colleague's computer, and in my linux system. I believe it may be a problem with some of the libraries installed in my machine, but I have no idea what the problem would be.
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