copy_all_cell_data.ipynb

{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Compile cells files "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "['L1_DAC_bNAC219_1', 'L1_DAC_bNAC219_2', 'L1_DAC_bNAC219_3', 'L1_DAC_bNAC219_4', 'L1_DAC_bNAC219_5', 'L1_DAC_cNAC187_1', 'L1_DAC_cNAC187_2', 'L1_DAC_cNAC187_3', 'L1_DAC_cNAC187_4', 'L1_DAC_cNAC187_5', 'L1_DLAC_cNAC187_1', 'L1_DLAC_cNAC187_2', 'L1_DLAC_cNAC187_3', 'L1_DLAC_cNAC187_4', 'L1_DLAC_cNAC187_5', 'L1_HAC_bNAC219_1', 'L1_HAC_bNAC219_2', 'L1_HAC_bNAC219_3', 'L1_HAC_bNAC219_4', 'L1_HAC_bNAC219_5', 'L1_HAC_cIR216_1', 'L1_HAC_cIR216_2', 'L1_HAC_cIR216_3', 'L1_HAC_cIR216_4', 'L1_HAC_cIR216_5', 'L1_HAC_cNAC187_1', 'L1_HAC_cNAC187_2', 'L1_HAC_cNAC187_3', 'L1_HAC_cNAC187_4', 'L1_HAC_cNAC187_5', 'L1_NGC-DA_bNAC219_1', 'L1_NGC-DA_bNAC219_2', 'L1_NGC-DA_bNAC219_3', 'L1_NGC-DA_bNAC219_4', 'L1_NGC-DA_bNAC219_5', 'L1_NGC-DA_cACint209_1', 'L1_NGC-DA_cACint209_2', 'L1_NGC-DA_cACint209_3', 'L1_NGC-DA_cACint209_4', 'L1_NGC-DA_cACint209_5', 'L1_NGC-DA_cNAC187_1', 'L1_NGC-DA_cNAC187_2', 'L1_NGC-DA_cNAC187_3', 'L1_NGC-DA_cNAC187_4', 'L1_NGC-DA_cNAC187_5', 'L1_NGC-DA_cSTUT189_1', 'L1_NGC-DA_cSTUT189_2', 'L1_NGC-DA_cSTUT189_3', 'L1_NGC-DA_cSTUT189_4', 'L1_NGC-DA_cSTUT189_5', 'L1_NGC-SA_cNAC187_1', 'L1_NGC-SA_cNAC187_2', 'L1_NGC-SA_cNAC187_3', 'L1_NGC-SA_cNAC187_4', 'L1_NGC-SA_cNAC187_5', 'L1_SLAC_bNAC219_1', 'L1_SLAC_bNAC219_2', 'L1_SLAC_bNAC219_3', 'L1_SLAC_bNAC219_4', 'L1_SLAC_bNAC219_5', 'L1_SLAC_cACint209_1', 'L1_SLAC_cACint209_2', 'L1_SLAC_cACint209_3', 'L1_SLAC_cACint209_4', 'L1_SLAC_cACint209_5', 'L1_SLAC_cNAC187_1', 'L1_SLAC_cNAC187_2', 'L1_SLAC_cNAC187_3', 'L1_SLAC_cNAC187_4', 'L1_SLAC_cNAC187_5', 'L23_BP_bAC217_1', 'L23_BP_bAC217_2', 'L23_BP_bAC217_3', 'L23_BP_bAC217_4', 'L23_BP_bAC217_5', 'L23_BP_bIR215_1', 'L23_BP_bIR215_2', 'L23_BP_bIR215_3', 'L23_BP_bIR215_4', 'L23_BP_bIR215_5', 'L23_BP_bNAC219_1', 'L23_BP_bNAC219_2', 'L23_BP_bNAC219_3', 'L23_BP_bNAC219_4', 'L23_BP_bNAC219_5', 'L23_BP_cACint209_1', 'L23_BP_cACint209_2', 'L23_BP_cACint209_3', 'L23_BP_cACint209_4', 'L23_BP_cACint209_5', 'L23_BP_cNAC187_1', 'L23_BP_cNAC187_2', 'L23_BP_cNAC187_3', 'L23_BP_cNAC187_4', 'L23_BP_cNAC187_5', 'L23_BP_dSTUT214_1', 'L23_BP_dSTUT214_2', 'L23_BP_dSTUT214_3', 'L23_BP_dSTUT214_4', 'L23_BP_dSTUT214_5', 'L23_BTC_bAC217_1', 'L23_BTC_bAC217_2', 'L23_BTC_bAC217_3', 'L23_BTC_bAC217_4', 'L23_BTC_bAC217_5', 'L23_BTC_bIR215_1', 'L23_BTC_bIR215_2', 'L23_BTC_bIR215_3', 'L23_BTC_bIR215_4', 'L23_BTC_bIR215_5', 'L23_BTC_bNAC219_1', 'L23_BTC_bNAC219_2', 'L23_BTC_bNAC219_3', 'L23_BTC_bNAC219_4', 'L23_BTC_bNAC219_5', 'L23_BTC_cACint209_1', 'L23_BTC_cACint209_2', 'L23_BTC_cACint209_3', 'L23_BTC_cACint209_4', 'L23_BTC_cACint209_5', 'L23_BTC_cNAC187_1', 'L23_BTC_cNAC187_2', 'L23_BTC_cNAC187_3', 'L23_BTC_cNAC187_4', 'L23_BTC_cNAC187_5', 'L23_ChC_cACint209_1', 'L23_ChC_cACint209_2', 'L23_ChC_cACint209_3', 'L23_ChC_cACint209_4', 'L23_ChC_cACint209_5', 'L23_ChC_cNAC187_1', 'L23_ChC_cNAC187_2', 'L23_ChC_cNAC187_3', 'L23_ChC_cNAC187_4', 'L23_ChC_cNAC187_5', 'L23_ChC_dNAC222_1', 'L23_ChC_dNAC222_2', 'L23_ChC_dNAC222_3', 'L23_ChC_dNAC222_4', 'L23_ChC_dNAC222_5', 'L23_DBC_bAC217_1', 'L23_DBC_bAC217_2', 'L23_DBC_bAC217_3', 'L23_DBC_bAC217_4', 'L23_DBC_bAC217_5', 'L23_DBC_bIR215_1', 'L23_DBC_bIR215_2', 'L23_DBC_bIR215_3', 'L23_DBC_bIR215_4', 'L23_DBC_bIR215_5', 'L23_DBC_bNAC219_1', 'L23_DBC_bNAC219_2', 'L23_DBC_bNAC219_3', 'L23_DBC_bNAC219_4', 'L23_DBC_bNAC219_5', 'L23_DBC_cACint209_1', 'L23_DBC_cACint209_2', 'L23_DBC_cACint209_3', 'L23_DBC_cACint209_4', 'L23_DBC_cACint209_5', 'L23_LBC_bAC217_1', 'L23_LBC_bAC217_2', 'L23_LBC_bAC217_3', 'L23_LBC_bAC217_4', 'L23_LBC_bAC217_5', 'L23_LBC_bNAC219_1', 'L23_LBC_bNAC219_2', 'L23_LBC_bNAC219_3', 'L23_LBC_bNAC219_4', 'L23_LBC_bNAC219_5', 'L23_LBC_cACint209_1', 'L23_LBC_cACint209_2', 'L23_LBC_cACint209_3', 'L23_LBC_cACint209_4', 'L23_LBC_cACint209_5', 'L23_LBC_cNAC187_1', 'L23_LBC_cNAC187_2', 'L23_LBC_cNAC187_3', 'L23_LBC_cNAC187_4', 'L23_LBC_cNAC187_5', 'L23_LBC_cSTUT189_1', 'L23_LBC_cSTUT189_2', 'L23_LBC_cSTUT189_3', 'L23_LBC_cSTUT189_4', 'L23_LBC_cSTUT189_5', 'L23_LBC_dNAC222_1', 'L23_LBC_dNAC222_2', 'L23_LBC_dNAC222_3', 'L23_LBC_dNAC222_4', 'L23_LBC_dNAC222_5', 'L23_MC_bAC217_1', 'L23_MC_bAC217_2', 'L23_MC_bAC217_3', 'L23_MC_bAC217_4', 'L23_MC_bAC217_5', 'L23_MC_bNAC219_1', 'L23_MC_bNAC219_2', 'L23_MC_bNAC219_3', 'L23_MC_bNAC219_4', 'L23_MC_bNAC219_5', 'L23_MC_cACint209_1', 'L23_MC_cACint209_2', 'L23_MC_cACint209_3', 'L23_MC_cACint209_4', 'L23_MC_cACint209_5', 'L23_MC_cNAC187_1', 'L23_MC_cNAC187_2', 'L23_MC_cNAC187_3', 'L23_MC_cNAC187_4', 'L23_MC_cNAC187_5', 'L23_MC_dNAC222_1', 'L23_MC_dNAC222_2', 'L23_MC_dNAC222_3', 'L23_MC_dNAC222_4', 'L23_MC_dNAC222_5', 'L23_NBC_bAC217_1', 'L23_NBC_bAC217_2', 'L23_NBC_bAC217_3', 'L23_NBC_bAC217_4', 'L23_NBC_bAC217_5', 'L23_NBC_bNAC219_1', 'L23_NBC_bNAC219_2', 'L23_NBC_bNAC219_3', 'L23_NBC_bNAC219_4', 'L23_NBC_bNAC219_5', 'L23_NBC_cACint209_1', 'L23_NBC_cACint209_2', 'L23_NBC_cACint209_3', 'L23_NBC_cACint209_4', 'L23_NBC_cACint209_5', 'L23_NBC_cIR216_1', 'L23_NBC_cIR216_2', 'L23_NBC_cIR216_3', 'L23_NBC_cIR216_4', 'L23_NBC_cIR216_5', 'L23_NBC_cNAC187_1', 'L23_NBC_cNAC187_2', 'L23_NBC_cNAC187_3', 'L23_NBC_cNAC187_4', 'L23_NBC_cNAC187_5', 'L23_NBC_dNAC222_1', 'L23_NBC_dNAC222_2', 'L23_NBC_dNAC222_3', 'L23_NBC_dNAC222_4', 'L23_NBC_dNAC222_5', 'L23_NGC_bNAC219_1', 'L23_NGC_bNAC219_2', 'L23_NGC_bNAC219_3', 'L23_NGC_bNAC219_4', 'L23_NGC_bNAC219_5', 'L23_NGC_cACint209_1', 'L23_NGC_cACint209_2', 'L23_NGC_cACint209_3', 'L23_NGC_cACint209_4', 'L23_NGC_cACint209_5', 'L23_NGC_cNAC187_1', 'L23_NGC_cNAC187_2', 'L23_NGC_cNAC187_3', 'L23_NGC_cNAC187_4', 'L23_NGC_cNAC187_5', 'L23_NGC_cSTUT189_1', 'L23_NGC_cSTUT189_2', 'L23_NGC_cSTUT189_3', 'L23_NGC_cSTUT189_4', 'L23_NGC_cSTUT189_5', 'L23_PC_cADpyr229_1', 'L23_PC_cADpyr229_2', 'L23_PC_cADpyr229_3', 'L23_PC_cADpyr229_4', 'L23_PC_cADpyr229_5', 'L23_SBC_bNAC219_1', 'L23_SBC_bNAC219_2', 'L23_SBC_bNAC219_3', 'L23_SBC_bNAC219_4', 'L23_SBC_bNAC219_5', 'L23_SBC_cACint209_1', 'L23_SBC_cACint209_2', 'L23_SBC_cACint209_3', 'L23_SBC_cACint209_4', 'L23_SBC_cACint209_5', 'L23_SBC_dNAC222_1', 'L23_SBC_dNAC222_2', 'L23_SBC_dNAC222_3', 'L23_SBC_dNAC222_4', 'L23_SBC_dNAC222_5', 'L4_BP_bAC217_1', 'L4_BP_bAC217_2', 'L4_BP_bAC217_3', 'L4_BP_bAC217_4', 'L4_BP_bAC217_5', 'L4_BP_bIR215_1', 'L4_BP_bIR215_2', 'L4_BP_bIR215_3', 'L4_BP_bIR215_4', 'L4_BP_bIR215_5', 'L4_BP_bNAC219_1', 'L4_BP_bNAC219_2', 'L4_BP_bNAC219_3', 'L4_BP_bNAC219_4', 'L4_BP_bNAC219_5', 'L4_BP_cACint209_1', 'L4_BP_cACint209_2', 'L4_BP_cACint209_3', 'L4_BP_cACint209_4', 'L4_BP_cACint209_5', 'L4_BP_cNAC187_1', 'L4_BP_cNAC187_2', 'L4_BP_cNAC187_3', 'L4_BP_cNAC187_4', 'L4_BP_cNAC187_5', 'L4_BP_dSTUT214_1', 'L4_BP_dSTUT214_2', 'L4_BP_dSTUT214_3', 'L4_BP_dSTUT214_4', 'L4_BP_dSTUT214_5', 'L4_BTC_bAC217_1', 'L4_BTC_bAC217_2', 'L4_BTC_bAC217_3', 'L4_BTC_bAC217_4', 'L4_BTC_bAC217_5', 'L4_BTC_bIR215_1', 'L4_BTC_bIR215_2', 'L4_BTC_bIR215_3', 'L4_BTC_bIR215_4', 'L4_BTC_bIR215_5', 'L4_BTC_bSTUT213_1', 'L4_BTC_bSTUT213_2', 'L4_BTC_bSTUT213_3', 'L4_BTC_bSTUT213_4', 'L4_BTC_bSTUT213_5', 'L4_BTC_cACint209_1', 'L4_BTC_cACint209_2', 'L4_BTC_cACint209_3', 'L4_BTC_cACint209_4', 'L4_BTC_cACint209_5', 'L4_BTC_cNAC187_1', 'L4_BTC_cNAC187_2', 'L4_BTC_cNAC187_3', 'L4_BTC_cNAC187_4', 'L4_BTC_cNAC187_5', 'L4_BTC_dNAC222_1', 'L4_BTC_dNAC222_2', 'L4_BTC_dNAC222_3', 'L4_BTC_dNAC222_4', 'L4_BTC_dNAC222_5', 'L4_ChC_cACint209_1', 'L4_ChC_cACint209_2', 'L4_ChC_cACint209_3', 'L4_ChC_cACint209_4', 'L4_ChC_cACint209_5', 'L4_ChC_cNAC187_1', 'L4_ChC_cNAC187_2', 'L4_ChC_cNAC187_3', 'L4_ChC_cNAC187_4', 'L4_ChC_cNAC187_5', 'L4_ChC_dNAC222_1', 'L4_ChC_dNAC222_2', 'L4_ChC_dNAC222_3', 'L4_ChC_dNAC222_4', 'L4_ChC_dNAC222_5', 'L4_DBC_bAC217_1', 'L4_DBC_bAC217_2', 'L4_DBC_bAC217_3', 'L4_DBC_bAC217_4', 'L4_DBC_bAC217_5', 'L4_DBC_bIR215_1', 'L4_DBC_bIR215_2', 'L4_DBC_bIR215_3', 'L4_DBC_bIR215_4', 'L4_DBC_bIR215_5', 'L4_DBC_bNAC219_1', 'L4_DBC_bNAC219_2', 'L4_DBC_bNAC219_3', 'L4_DBC_bNAC219_4', 'L4_DBC_bNAC219_5', 'L4_DBC_bSTUT213_1', 'L4_DBC_bSTUT213_2', 'L4_DBC_bSTUT213_3', 'L4_DBC_bSTUT213_4', 'L4_DBC_bSTUT213_5', 'L4_DBC_cACint209_1', 'L4_DBC_cACint209_2', 'L4_DBC_cACint209_3', 'L4_DBC_cACint209_4', 'L4_DBC_cACint209_5', 'L4_DBC_cIR216_1', 'L4_DBC_cIR216_2', 'L4_DBC_cIR216_3', 'L4_DBC_cIR216_4', 'L4_DBC_cIR216_5', 'L4_DBC_cNAC187_1', 'L4_DBC_cNAC187_2', 'L4_DBC_cNAC187_3', 'L4_DBC_cNAC187_4', 'L4_DBC_cNAC187_5', 'L4_LBC_cACint209_1', 'L4_LBC_cACint209_2', 'L4_LBC_cACint209_3', 'L4_LBC_cACint209_4', 'L4_LBC_cACint209_5', 'L4_LBC_cNAC187_1', 'L4_LBC_cNAC187_2', 'L4_LBC_cNAC187_3', 'L4_LBC_cNAC187_4', 'L4_LBC_cNAC187_5', 'L4_LBC_cSTUT189_1', 'L4_LBC_cSTUT189_2', 'L4_LBC_cSTUT189_3', 'L4_LBC_cSTUT189_4', 'L4_LBC_cSTUT189_5', 'L4_LBC_dNAC222_1', 'L4_LBC_dNAC222_2', 'L4_LBC_dNAC222_3', 'L4_LBC_dNAC222_4', 'L4_LBC_dNAC222_5', 'L4_LBC_dSTUT214_1', 'L4_LBC_dSTUT214_2', 'L4_LBC_dSTUT214_3', 'L4_LBC_dSTUT214_4', 'L4_LBC_dSTUT214_5', 'L4_MC_bAC217_1', 'L4_MC_bAC217_2', 'L4_MC_bAC217_3', 'L4_MC_bAC217_4', 'L4_MC_bAC217_5', 'L4_MC_bNAC219_1', 'L4_MC_bNAC219_2', 'L4_MC_bNAC219_3', 'L4_MC_bNAC219_4', 'L4_MC_bNAC219_5', 'L4_MC_cACint209_1', 'L4_MC_cACint209_2', 'L4_MC_cACint209_3', 'L4_MC_cACint209_4', 'L4_MC_cACint209_5', 'L4_MC_cNAC187_1', 'L4_MC_cNAC187_2', 'L4_MC_cNAC187_3', 'L4_MC_cNAC187_4', 'L4_MC_cNAC187_5', 'L4_MC_dNAC222_1', 'L4_MC_dNAC222_2', 'L4_MC_dNAC222_3', 'L4_MC_dNAC222_4', 'L4_MC_dNAC222_5', 'L4_NBC_cACint209_1', 'L4_NBC_cACint209_2', 'L4_NBC_cACint209_3', 'L4_NBC_cACint209_4', 'L4_NBC_cACint209_5', 'L4_NBC_cIR216_1', 'L4_NBC_cIR216_2', 'L4_NBC_cIR216_3', 'L4_NBC_cIR216_4', 'L4_NBC_cIR216_5', 'L4_NBC_cNAC187_1', 'L4_NBC_cNAC187_2', 'L4_NBC_cNAC187_3', 'L4_NBC_cNAC187_4', 'L4_NBC_cNAC187_5', 'L4_NBC_dNAC222_1', 'L4_NBC_dNAC222_2', 'L4_NBC_dNAC222_3', 'L4_NBC_dNAC222_4', 'L4_NBC_dNAC222_5', 'L4_NGC_bNAC219_1', 'L4_NGC_bNAC219_2', 'L4_NGC_bNAC219_3', 'L4_NGC_bNAC219_4', 'L4_NGC_bNAC219_5', 'L4_NGC_cACint209_1', 'L4_NGC_cACint209_2', 'L4_NGC_cACint209_3', 'L4_NGC_cACint209_4', 'L4_NGC_cACint209_5', 'L4_NGC_cNAC187_1', 'L4_NGC_cNAC187_2', 'L4_NGC_cNAC187_3', 'L4_NGC_cNAC187_4', 'L4_NGC_cNAC187_5', 'L4_NGC_cSTUT189_1', 'L4_NGC_cSTUT189_2', 'L4_NGC_cSTUT189_3', 'L4_NGC_cSTUT189_4', 'L4_NGC_cSTUT189_5', 'L4_PC_cADpyr230_1', 'L4_PC_cADpyr230_2', 'L4_PC_cADpyr230_3', 'L4_PC_cADpyr230_4', 'L4_PC_cADpyr230_5', 'L4_SBC_bNAC219_1', 'L4_SBC_bNAC219_2', 'L4_SBC_bNAC219_3', 'L4_SBC_bNAC219_4', 'L4_SBC_bNAC219_5', 'L4_SBC_cACint209_1', 'L4_SBC_cACint209_2', 'L4_SBC_cACint209_3', 'L4_SBC_cACint209_4', 'L4_SBC_cACint209_5', 'L4_SBC_dNAC222_1', 'L4_SBC_dNAC222_2', 'L4_SBC_dNAC222_3', 'L4_SBC_dNAC222_4', 'L4_SBC_dNAC222_5', 'L4_SP_cADpyr230_1', 'L4_SP_cADpyr230_2', 'L4_SP_cADpyr230_3', 'L4_SP_cADpyr230_4', 'L4_SP_cADpyr230_5', 'L4_SS_cADpyr230_1', 'L4_SS_cADpyr230_2', 'L4_SS_cADpyr230_3', 'L4_SS_cADpyr230_4', 'L4_SS_cADpyr230_5', 'L5_BP_bAC217_1', 'L5_BP_bAC217_2', 'L5_BP_bAC217_3', 'L5_BP_bAC217_4', 'L5_BP_bAC217_5', 'L5_BP_bIR215_1', 'L5_BP_bIR215_2', 'L5_BP_bIR215_3', 'L5_BP_bIR215_4', 'L5_BP_bIR215_5', 'L5_BP_bNAC219_1', 'L5_BP_bNAC219_2', 'L5_BP_bNAC219_3', 'L5_BP_bNAC219_4', 'L5_BP_bNAC219_5', 'L5_BP_cACint209_1', 'L5_BP_cACint209_2', 'L5_BP_cACint209_3', 'L5_BP_cACint209_4', 'L5_BP_cACint209_5', 'L5_BP_cNAC187_1', 'L5_BP_cNAC187_2', 'L5_BP_cNAC187_3', 'L5_BP_cNAC187_4', 'L5_BP_cNAC187_5', 'L5_BP_dSTUT214_1', 'L5_BP_dSTUT214_2', 'L5_BP_dSTUT214_3', 'L5_BP_dSTUT214_4', 'L5_BP_dSTUT214_5', 'L5_BTC_bAC217_1', 'L5_BTC_bAC217_2', 'L5_BTC_bAC217_3', 'L5_BTC_bAC217_4', 'L5_BTC_bAC217_5', 'L5_BTC_cACint209_1', 'L5_BTC_cACint209_2', 'L5_BTC_cACint209_3', 'L5_BTC_cACint209_4', 'L5_BTC_cACint209_5', 'L5_BTC_cNAC187_1', 'L5_BTC_cNAC187_2', 'L5_BTC_cNAC187_3', 'L5_BTC_cNAC187_4', 'L5_BTC_cNAC187_5', 'L5_ChC_cACint209_1', 'L5_ChC_cACint209_2', 'L5_ChC_cACint209_3', 'L5_ChC_cACint209_4', 'L5_ChC_cACint209_5', 'L5_ChC_cNAC187_1', 'L5_ChC_cNAC187_2', 'L5_ChC_cNAC187_3', 'L5_ChC_cNAC187_4', 'L5_ChC_cNAC187_5', 'L5_ChC_dNAC222_1', 'L5_ChC_dNAC222_2', 'L5_ChC_dNAC222_3', 'L5_ChC_dNAC222_4', 'L5_ChC_dNAC222_5', 'L5_DBC_bAC217_1', 'L5_DBC_bAC217_2', 'L5_DBC_bAC217_3', 'L5_DBC_bAC217_4', 'L5_DBC_bAC217_5', 'L5_DBC_bIR215_1', 'L5_DBC_bIR215_2', 'L5_DBC_bIR215_3', 'L5_DBC_bIR215_4', 'L5_DBC_bIR215_5', 'L5_DBC_bNAC219_1', 'L5_DBC_bNAC219_2', 'L5_DBC_bNAC219_3', 'L5_DBC_bNAC219_4', 'L5_DBC_bNAC219_5', 'L5_DBC_bSTUT213_1', 'L5_DBC_bSTUT213_2', 'L5_DBC_bSTUT213_3', 'L5_DBC_bSTUT213_4', 'L5_DBC_bSTUT213_5', 'L5_DBC_cACint209_1', 'L5_DBC_cACint209_2', 'L5_DBC_cACint209_3', 'L5_DBC_cACint209_4', 'L5_DBC_cACint209_5', 'L5_DBC_cIR216_1', 'L5_DBC_cIR216_2', 'L5_DBC_cIR216_3', 'L5_DBC_cIR216_4', 'L5_DBC_cIR216_5', 'L5_DBC_cNAC187_1', 'L5_DBC_cNAC187_2', 'L5_DBC_cNAC187_3', 'L5_DBC_cNAC187_4', 'L5_DBC_cNAC187_5', 'L5_LBC_bAC217_1', 'L5_LBC_bAC217_2', 'L5_LBC_bAC217_3', 'L5_LBC_bAC217_4', 'L5_LBC_bAC217_5', 'L5_LBC_cACint209_1', 'L5_LBC_cACint209_2', 'L5_LBC_cACint209_3', 'L5_LBC_cACint209_4', 'L5_LBC_cACint209_5', 'L5_LBC_cIR216_1', 'L5_LBC_cIR216_2', 'L5_LBC_cIR216_3', 'L5_LBC_cIR216_4', 'L5_LBC_cIR216_5', 'L5_LBC_cNAC187_1', 'L5_LBC_cNAC187_2', 'L5_LBC_cNAC187_3', 'L5_LBC_cNAC187_4', 'L5_LBC_cNAC187_5', 'L5_LBC_cSTUT189_1', 'L5_LBC_cSTUT189_2', 'L5_LBC_cSTUT189_3', 'L5_LBC_cSTUT189_4', 'L5_LBC_cSTUT189_5', 'L5_LBC_dNAC222_1', 'L5_LBC_dNAC222_2', 'L5_LBC_dNAC222_3', 'L5_LBC_dNAC222_4', 'L5_LBC_dNAC222_5', 'L5_LBC_dSTUT214_1', 'L5_LBC_dSTUT214_2', 'L5_LBC_dSTUT214_3', 'L5_LBC_dSTUT214_4', 'L5_LBC_dSTUT214_5', 'L5_MC_bAC217_1', 'L5_MC_bAC217_2', 'L5_MC_bAC217_3', 'L5_MC_bAC217_4', 'L5_MC_bAC217_5', 'L5_MC_bIR215_1', 'L5_MC_bIR215_2', 'L5_MC_bIR215_3', 'L5_MC_bIR215_4', 'L5_MC_bIR215_5', 'L5_MC_bSTUT213_1', 'L5_MC_bSTUT213_2', 'L5_MC_bSTUT213_3', 'L5_MC_bSTUT213_4', 'L5_MC_bSTUT213_5', 'L5_MC_cACint209_1', 'L5_MC_cACint209_2', 'L5_MC_cACint209_3', 'L5_MC_cACint209_4', 'L5_MC_cACint209_5', 'L5_MC_cNAC187_1', 'L5_MC_cNAC187_2', 'L5_MC_cNAC187_3', 'L5_MC_cNAC187_4', 'L5_MC_cNAC187_5', 'L5_MC_cSTUT189_1', 'L5_MC_cSTUT189_2', 'L5_MC_cSTUT189_3', 'L5_MC_cSTUT189_4', 'L5_MC_cSTUT189_5', 'L5_MC_dNAC222_1', 'L5_MC_dNAC222_2', 'L5_MC_dNAC222_3', 'L5_MC_dNAC222_4', 'L5_MC_dNAC222_5', 'L5_NBC_bAC217_1', 'L5_NBC_bAC217_2', 'L5_NBC_bAC217_3', 'L5_NBC_bAC217_4', 'L5_NBC_bAC217_5', 'L5_NBC_bIR215_1', 'L5_NBC_bIR215_2', 'L5_NBC_bIR215_3', 'L5_NBC_bIR215_4', 'L5_NBC_bIR215_5', 'L5_NBC_bSTUT213_1', 'L5_NBC_bSTUT213_2', 'L5_NBC_bSTUT213_3', 'L5_NBC_bSTUT213_4', 'L5_NBC_bSTUT213_5', 'L5_NBC_cACint209_1', 'L5_NBC_cACint209_2', 'L5_NBC_cACint209_3', 'L5_NBC_cACint209_4', 'L5_NBC_cACint209_5', 'L5_NBC_cIR216_1', 'L5_NBC_cIR216_2', 'L5_NBC_cIR216_3', 'L5_NBC_cIR216_4', 'L5_NBC_cIR216_5', 'L5_NBC_cNAC187_1', 'L5_NBC_cNAC187_2', 'L5_NBC_cNAC187_3', 'L5_NBC_cNAC187_4', 'L5_NBC_cNAC187_5', 'L5_NBC_cSTUT189_1', 'L5_NBC_cSTUT189_2', 'L5_NBC_cSTUT189_3', 'L5_NBC_cSTUT189_4', 'L5_NBC_cSTUT189_5', 'L5_NBC_dSTUT214_1', 'L5_NBC_dSTUT214_2', 'L5_NBC_dSTUT214_3', 'L5_NBC_dSTUT214_4', 'L5_NBC_dSTUT214_5', 'L5_NGC_bNAC219_1', 'L5_NGC_bNAC219_2', 'L5_NGC_bNAC219_3', 'L5_NGC_bNAC219_4', 'L5_NGC_bNAC219_5', 'L5_NGC_cACint209_1', 'L5_NGC_cACint209_2', 'L5_NGC_cACint209_3', 'L5_NGC_cACint209_4', 'L5_NGC_cACint209_5', 'L5_NGC_cNAC187_1', 'L5_NGC_cNAC187_2', 'L5_NGC_cNAC187_3', 'L5_NGC_cNAC187_4', 'L5_NGC_cNAC187_5', 'L5_NGC_cSTUT189_1', 'L5_NGC_cSTUT189_2', 'L5_NGC_cSTUT189_3', 'L5_NGC_cSTUT189_4', 'L5_NGC_cSTUT189_5', 'L5_SBC_bNAC219_1', 'L5_SBC_bNAC219_2', 'L5_SBC_bNAC219_3', 'L5_SBC_bNAC219_4', 'L5_SBC_bNAC219_5', 'L5_SBC_cACint209_1', 'L5_SBC_cACint209_2', 'L5_SBC_cACint209_3', 'L5_SBC_cACint209_4', 'L5_SBC_cACint209_5', 'L5_SBC_dNAC222_1', 'L5_SBC_dNAC222_2', 'L5_SBC_dNAC222_3', 'L5_SBC_dNAC222_4', 'L5_SBC_dNAC222_5', 'L5_STPC_cADpyr232_1', 'L5_STPC_cADpyr232_2', 'L5_STPC_cADpyr232_3', 'L5_STPC_cADpyr232_4', 'L5_STPC_cADpyr232_5', 'L5_TTPC1_cADpyr232_1', 'L5_TTPC1_cADpyr232_2', 'L5_TTPC1_cADpyr232_3', 'L5_TTPC1_cADpyr232_4', 'L5_TTPC1_cADpyr232_5', 'L5_TTPC2_cADpyr232_1', 'L5_TTPC2_cADpyr232_2', 'L5_TTPC2_cADpyr232_3', 'L5_TTPC2_cADpyr232_4', 'L5_TTPC2_cADpyr232_5', 'L5_UTPC_cADpyr232_1', 'L5_UTPC_cADpyr232_2', 'L5_UTPC_cADpyr232_3', 'L5_UTPC_cADpyr232_4', 'L5_UTPC_cADpyr232_5', 'L6_BPC_cADpyr231_1', 'L6_BPC_cADpyr231_2', 'L6_BPC_cADpyr231_3', 'L6_BPC_cADpyr231_4', 'L6_BPC_cADpyr231_5', 'L6_BP_bAC217_1', 'L6_BP_bAC217_2', 'L6_BP_bAC217_3', 'L6_BP_bAC217_4', 'L6_BP_bAC217_5', 'L6_BP_bIR215_1', 'L6_BP_bIR215_2', 'L6_BP_bIR215_3', 'L6_BP_bIR215_4', 'L6_BP_bIR215_5', 'L6_BP_bNAC219_1', 'L6_BP_bNAC219_2', 'L6_BP_bNAC219_3', 'L6_BP_bNAC219_4', 'L6_BP_bNAC219_5', 'L6_BP_cACint209_1', 'L6_BP_cACint209_2', 'L6_BP_cACint209_3', 'L6_BP_cACint209_4', 'L6_BP_cACint209_5', 'L6_BP_cNAC187_1', 'L6_BP_cNAC187_2', 'L6_BP_cNAC187_3', 'L6_BP_cNAC187_4', 'L6_BP_cNAC187_5', 'L6_BP_dSTUT214_1', 'L6_BP_dSTUT214_2', 'L6_BP_dSTUT214_3', 'L6_BP_dSTUT214_4', 'L6_BP_dSTUT214_5', 'L6_BTC_bAC217_1', 'L6_BTC_bAC217_2', 'L6_BTC_bAC217_3', 'L6_BTC_bAC217_4', 'L6_BTC_bAC217_5', 'L6_BTC_cACint209_1', 'L6_BTC_cACint209_2', 'L6_BTC_cACint209_3', 'L6_BTC_cACint209_4', 'L6_BTC_cACint209_5', 'L6_BTC_cNAC187_1', 'L6_BTC_cNAC187_2', 'L6_BTC_cNAC187_3', 'L6_BTC_cNAC187_4', 'L6_BTC_cNAC187_5', 'L6_ChC_cACint209_1', 'L6_ChC_cACint209_2', 'L6_ChC_cACint209_3', 'L6_ChC_cACint209_4', 'L6_ChC_cACint209_5', 'L6_ChC_cNAC187_1', 'L6_ChC_cNAC187_2', 'L6_ChC_cNAC187_3', 'L6_ChC_cNAC187_4', 'L6_ChC_cNAC187_5', 'L6_ChC_dNAC222_1', 'L6_ChC_dNAC222_2', 'L6_ChC_dNAC222_3', 'L6_ChC_dNAC222_4', 'L6_ChC_dNAC222_5', 'L6_DBC_bAC217_1', 'L6_DBC_bAC217_2', 'L6_DBC_bAC217_3', 'L6_DBC_bAC217_4', 'L6_DBC_bAC217_5', 'L6_DBC_bIR215_1', 'L6_DBC_bIR215_2', 'L6_DBC_bIR215_3', 'L6_DBC_bIR215_4', 'L6_DBC_bIR215_5', 'L6_DBC_bNAC219_1', 'L6_DBC_bNAC219_2', 'L6_DBC_bNAC219_3', 'L6_DBC_bNAC219_4', 'L6_DBC_bNAC219_5', 'L6_DBC_bSTUT213_1', 'L6_DBC_bSTUT213_2', 'L6_DBC_bSTUT213_3', 'L6_DBC_bSTUT213_4', 'L6_DBC_bSTUT213_5', 'L6_DBC_cACint209_1', 'L6_DBC_cACint209_2', 'L6_DBC_cACint209_3', 'L6_DBC_cACint209_4', 'L6_DBC_cACint209_5', 'L6_DBC_cIR216_1', 'L6_DBC_cIR216_2', 'L6_DBC_cIR216_3', 'L6_DBC_cIR216_4', 'L6_DBC_cIR216_5', 'L6_DBC_cNAC187_1', 'L6_DBC_cNAC187_2', 'L6_DBC_cNAC187_3', 'L6_DBC_cNAC187_4', 'L6_DBC_cNAC187_5', 'L6_IPC_cADpyr231_1', 'L6_IPC_cADpyr231_2', 'L6_IPC_cADpyr231_3', 'L6_IPC_cADpyr231_4', 'L6_IPC_cADpyr231_5', 'L6_LBC_bAC217_1', 'L6_LBC_bAC217_2', 'L6_LBC_bAC217_3', 'L6_LBC_bAC217_4', 'L6_LBC_bAC217_5', 'L6_LBC_bIR215_1', 'L6_LBC_bIR215_2', 'L6_LBC_bIR215_3', 'L6_LBC_bIR215_4', 'L6_LBC_bIR215_5', 'L6_LBC_bNAC219_1', 'L6_LBC_bNAC219_2', 'L6_LBC_bNAC219_3', 'L6_LBC_bNAC219_4', 'L6_LBC_bNAC219_5', 'L6_LBC_bSTUT213_1', 'L6_LBC_bSTUT213_2', 'L6_LBC_bSTUT213_3', 'L6_LBC_bSTUT213_4', 'L6_LBC_bSTUT213_5', 'L6_LBC_cNAC187_1', 'L6_LBC_cNAC187_2', 'L6_LBC_cNAC187_3', 'L6_LBC_cNAC187_4', 'L6_LBC_cNAC187_5', 'L6_LBC_cSTUT189_1', 'L6_LBC_cSTUT189_2', 'L6_LBC_cSTUT189_3', 'L6_LBC_cSTUT189_4', 'L6_LBC_cSTUT189_5', 'L6_MC_bAC217_1', 'L6_MC_bAC217_2', 'L6_MC_bAC217_3', 'L6_MC_bAC217_4', 'L6_MC_bAC217_5', 'L6_MC_bIR215_1', 'L6_MC_bIR215_2', 'L6_MC_bIR215_3', 'L6_MC_bIR215_4', 'L6_MC_bIR215_5', 'L6_MC_bNAC219_1', 'L6_MC_bNAC219_2', 'L6_MC_bNAC219_3', 'L6_MC_bNAC219_4', 'L6_MC_bNAC219_5', 'L6_MC_bSTUT213_1', 'L6_MC_bSTUT213_2', 'L6_MC_bSTUT213_3', 'L6_MC_bSTUT213_4', 'L6_MC_bSTUT213_5', 'L6_MC_cACint209_1', 'L6_MC_cACint209_2', 'L6_MC_cACint209_3', 'L6_MC_cACint209_4', 'L6_MC_cACint209_5', 'L6_MC_cIR216_1', 'L6_MC_cIR216_2', 'L6_MC_cIR216_3', 'L6_MC_cIR216_4', 'L6_MC_cIR216_5', 'L6_MC_cNAC187_1', 'L6_MC_cNAC187_2', 'L6_MC_cNAC187_3', 'L6_MC_cNAC187_4', 'L6_MC_cNAC187_5', 'L6_NBC_bAC217_1', 'L6_NBC_bAC217_2', 'L6_NBC_bAC217_3', 'L6_NBC_bAC217_4', 'L6_NBC_bAC217_5', 'L6_NBC_bIR215_1', 'L6_NBC_bIR215_2', 'L6_NBC_bIR215_3', 'L6_NBC_bIR215_4', 'L6_NBC_bIR215_5', 'L6_NBC_bSTUT213_1', 'L6_NBC_bSTUT213_2', 'L6_NBC_bSTUT213_3', 'L6_NBC_bSTUT213_4', 'L6_NBC_bSTUT213_5', 'L6_NBC_cACint209_1', 'L6_NBC_cACint209_2', 'L6_NBC_cACint209_3', 'L6_NBC_cACint209_4', 'L6_NBC_cACint209_5', 'L6_NBC_cIR216_1', 'L6_NBC_cIR216_2', 'L6_NBC_cIR216_3', 'L6_NBC_cIR216_4', 'L6_NBC_cIR216_5', 'L6_NBC_cNAC187_1', 'L6_NBC_cNAC187_2', 'L6_NBC_cNAC187_3', 'L6_NBC_cNAC187_4', 'L6_NBC_cNAC187_5', 'L6_NBC_cSTUT189_1', 'L6_NBC_cSTUT189_2', 'L6_NBC_cSTUT189_3', 'L6_NBC_cSTUT189_4', 'L6_NBC_cSTUT189_5', 'L6_NBC_dSTUT214_1', 'L6_NBC_dSTUT214_2', 'L6_NBC_dSTUT214_3', 'L6_NBC_dSTUT214_4', 'L6_NBC_dSTUT214_5', 'L6_NGC_bNAC219_1', 'L6_NGC_bNAC219_2', 'L6_NGC_bNAC219_3', 'L6_NGC_bNAC219_4', 'L6_NGC_bNAC219_5', 'L6_NGC_cACint209_1', 'L6_NGC_cACint209_2', 'L6_NGC_cACint209_3', 'L6_NGC_cACint209_4', 'L6_NGC_cACint209_5', 'L6_NGC_cNAC187_1', 'L6_NGC_cNAC187_2', 'L6_NGC_cNAC187_3', 'L6_NGC_cNAC187_4', 'L6_NGC_cNAC187_5', 'L6_NGC_cSTUT189_1', 'L6_NGC_cSTUT189_2', 'L6_NGC_cSTUT189_3', 'L6_NGC_cSTUT189_4', 'L6_NGC_cSTUT189_5', 'L6_SBC_bNAC219_1', 'L6_SBC_bNAC219_2', 'L6_SBC_bNAC219_3', 'L6_SBC_bNAC219_4', 'L6_SBC_bNAC219_5', 'L6_SBC_cACint209_1', 'L6_SBC_cACint209_2', 'L6_SBC_cACint209_3', 'L6_SBC_cACint209_4', 'L6_SBC_cACint209_5', 'L6_SBC_dNAC222_1', 'L6_SBC_dNAC222_2', 'L6_SBC_dNAC222_3', 'L6_SBC_dNAC222_4', 'L6_SBC_dNAC222_5', 'L6_TPC_L1_cADpyr231_1', 'L6_TPC_L1_cADpyr231_2', 'L6_TPC_L1_cADpyr231_3', 'L6_TPC_L1_cADpyr231_4', 'L6_TPC_L1_cADpyr231_5', 'L6_TPC_L4_cADpyr231_1', 'L6_TPC_L4_cADpyr231_2', 'L6_TPC_L4_cADpyr231_3', 'L6_TPC_L4_cADpyr231_4', 'L6_TPC_L4_cADpyr231_5', 'L6_UTPC_cADpyr231_1', 'L6_UTPC_cADpyr231_2', 'L6_UTPC_cADpyr231_3', 'L6_UTPC_cADpyr231_4', 'L6_UTPC_cADpyr231_5']\n"
     ]
    }
   ],
   "source": [
    "import os\n",
    "import shutil\n",
    "import neuron   \n",
    "\n",
    "# ## https://bbp.epfl.ch/nmc-portal/assets/documents/static/Download/hoc_combos_syn.1_0_10.allzips.tar\n",
    "# ## extracted 1035 folders in home/fernando/hoc_combos_syn.1_0_10.allzips  #~ not inclued in the github\n",
    "\n",
    "rootFolder = 'C:/Users/jacob/Documents/Work/NetPyNE/TMS_Stimulation/'\n",
    "cellsFolder = rootFolder + 'BBP/'\n",
    "#os.chdir(cellsFolder)\n",
    "\n",
    "folder = os.listdir(cellsFolder)\n",
    "folder = sorted(folder)\n",
    "print(folder)\n",
    "\n",
    "compilemods = 0\n",
    "copyStochKv_deterministic = 0\n",
    "copyhocfolders = 1\n",
    "\n",
    "output_dir = 'C:/Users/jacob/Documents/Work/NetPyNE/TMS_Stimulation/tmsneurosim/nrn/cells/cells_hoc/'"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {},
   "outputs": [],
   "source": [
    "# os.chdir(rootFolder)   \n",
    "\n",
    "# if copyhocfolders:\n",
    "#     for cellName in folder:\n",
    "#         if cellName[-1] == '1':\n",
    "\n",
    "#             out_folder = output_dir + cellName[:-5]            \n",
    "#             # os.popen(\"mkdir {0}\".format(out_folder+'/morphology'))\n",
    "\n",
    "#             os.mkdir(out_folder)\n",
    "#             os.mkdir(f'{out_folder}/morphology')\n",
    "#             for mn in range(1,6):\n",
    "#                 print(f'{out_folder}/morphology/{str(mn)}')\n",
    "#                 os.mkdir(f'{out_folder}/morphology/{str(mn)}')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
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      "C:/Users/jacob/Documents/Work/NetPyNE/TMS_Stimulation/BBP/L1_DAC_bNAC219_2/morphology/* C:/Users/jacob/Documents/Work/NetPyNE/TMS_Stimulation/tmsneurosim/nrn/cells/cells_hoc/L1_DAC_bNAC/morphology/2/\n",
      "C:/Users/jacob/Documents/Work/NetPyNE/TMS_Stimulation/BBP/L1_DAC_bNAC219_3/morphology/* C:/Users/jacob/Documents/Work/NetPyNE/TMS_Stimulation/tmsneurosim/nrn/cells/cells_hoc/L1_DAC_bNAC/morphology/3/\n",
      "C:/Users/jacob/Documents/Work/NetPyNE/TMS_Stimulation/BBP/L1_DAC_bNAC219_4/morphology/* C:/Users/jacob/Documents/Work/NetPyNE/TMS_Stimulation/tmsneurosim/nrn/cells/cells_hoc/L1_DAC_bNAC/morphology/4/\n",
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   ],
   "source": [
    "os.chdir(rootFolder)   \n",
    "\n",
    "if copyhocfolders:\n",
    "\n",
    "    for cellName in folder:\n",
    "            \n",
    "        in_folder = cellsFolder + cellName\n",
    "        out_folder = output_dir + cellName[:-5]\n",
    "        \n",
    "        if cellName[-1] == '1':\n",
    "            shutil.copytree(in_folder, out_folder)\n",
    "        \n",
    "        try:\n",
    "            morphology_folder = f'{out_folder}/morphology/'\n",
    "            files = os.listdir(morphology_folder)\n",
    "            for file in files:\n",
    "                file_path = os.path.join(morphology_folder, file)\n",
    "                if os.path.isfile(file_path):\n",
    "                    os.remove(file_path)\n",
    "        except OSError:\n",
    "            print(\"Error occurred while deleting files.\")\n",
    "        \n",
    "        # os.remove(f'{out_folder}/morphology/*')\n",
    "\n",
    "        shutil.copytree(f'{in_folder}/morphology/', f'{out_folder}/morphology/{cellName[-1]}/')\n",
    "\n",
    "        print(f'{in_folder}/morphology/*', f'{out_folder}/morphology/{cellName[-1]}/')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "metadata": {},
   "outputs": [],
   "source": [
    "\n",
    "\n",
    "# copyStochKv_deterministic = True\n",
    "# compilemods = True\n",
    "\n",
    "# StochKvcells = []\n",
    "# nonStochKvcells = []\n",
    "\n",
    "# for cellName in folder:\n",
    "#     os.chdir(rootFolder+cellName+'/')\n",
    "    \n",
    "#     foldermech = os.listdir('mechanisms/')\n",
    "#     if 'StochKv.mod' in foldermech:\n",
    "#         StochKvcells.append(cellName) \n",
    "#     else:\n",
    "#         nonStochKvcells.append(cellName) "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "metadata": {},
   "outputs": [],
   "source": [
    "# os.chdir(rootFolder)   \n",
    "\n",
    "# if copyStochKv_deterministic:\n",
    "#     for cellName in folder:\n",
    "#         if cellName in StochKvcells:\n",
    "#             modfile = 'StochKv_deterministic.mod'\n",
    "#             outmodfile = '/home/fernando/S1_BBP/cell_data/' + cellName + '/mechanisms/StochKv_deterministic.mod'\n",
    "#             os.popen(\"cp {0} {1}\".format(modfile, outmodfile))\n",
    "#             print(outmodfile)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "metadata": {},
   "outputs": [],
   "source": [
    "# if compilemods:\n",
    "#     for cellName in folder[600:1035]:\n",
    "#         os.chdir('/home/fernando/S1_BBP/cell_data/'+cellName+'/')\n",
    "#         !nrnivmodl mechanisms # run the 1035 cells will take several minutes!!!"
   ]
  }
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