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I apologise if this is not a suitable place to ask a question of this type but I could not find any answers on the Bioconductor forum, link to my question: https://support.bioconductor.org/p/100245/
I am confused that the following code returns 0 datasets:
library(AnnotationHub)
hub=Annotationhub()
ctcf_imr90 <- query(hub, c("ENCODE","CTCF", "Mus Musculus", "ESC"))
AnnotationHub with 0 records
snapshotDate(): 2016-10-11_
I am trying to query ENCODE for all the datasets it has on CTCF in the mm9 genome. I would have thought that this would be a fairly standard thing but it comes up with no results...
This produces no results so I tried omitting CTCF and it returned many results.... This isn't the end of the world because I can just get the datasets I'm interested in directly from ENCODE but it's a bit of a pain and I would prefer if I could get it the Bioconductor way. Is it common for annotation queries as common as this to not return any results?
The text was updated successfully, but these errors were encountered:
I apologise if this is not a suitable place to ask a question of this type but I could not find any answers on the Bioconductor forum, link to my question: https://support.bioconductor.org/p/100245/
I am confused that the following code returns 0 datasets:
library(AnnotationHub)
hub=Annotationhub()
ctcf_imr90 <- query(hub, c("ENCODE","CTCF", "Mus Musculus", "ESC"))
AnnotationHub with 0 records
snapshotDate(): 2016-10-11_
I am trying to query ENCODE for all the datasets it has on CTCF in the mm9 genome. I would have thought that this would be a fairly standard thing but it comes up with no results...
This produces no results so I tried omitting CTCF and it returned many results.... This isn't the end of the world because I can just get the datasets I'm interested in directly from ENCODE but it's a bit of a pain and I would prefer if I could get it the Bioconductor way. Is it common for annotation queries as common as this to not return any results?
The text was updated successfully, but these errors were encountered: