ci.yml

name: CI

on: 
  pull_request:
    branches: [ master ]
  workflow_dispatch:  # allows manual execution

jobs:
  build:

    runs-on: ${{ matrix.os }}
    defaults:
      run:
        shell: bash -el {0}
    strategy:
      fail-fast: false
      matrix:
        os: ["macos-latest"]
        python-version: ["3.10"]

    steps:
      - name: Checkout code
        uses: actions/checkout@v4
        with:
          fetch-depth: 0  # Shallow clones should be disabled for a better relevancy of the git history  

      - name: Setup Miniconda
        uses: conda-incubator/setup-miniconda@v2
        with:
          activate-environment: sedkit-${{ matrix.python-version }}
          environment-file: env/environment-${{ matrix.python-version }}.yml
          python-version: ${{ matrix.python-version }}
          miniforge-version: latest
          auto-activate-base: false

      - name: Display Conda environment
        run: |
          conda info
          conda env list

      - name: Display Python version
        run: python -c "import sys; print(sys.version)"

      - name: Test with pytest
        run: |
          pip install pytest
          pytest -s