Consolidated_EpigenomeIDs_summary_Table.csv
add_Bstats_to_neandvars.py
add_Bstats_to_neandvars.py~
allpop_component_america_denisova_1minus2_controls.txt
allpop_component_america_neandertal_1minus2_controls.txt
allpop_component_category_counts_america_denisova_1minus2_snps.txt
allpop_component_category_counts_america_neandertal_1minus2_snps.txt
allpop_component_category_counts_centralasia_denisova_1minus2_snps.txt
allpop_component_category_counts_centralasia_neandertal_1minus2_snps.txt
allpop_component_category_counts_denisova_america2_snps.txt
allpop_component_category_counts_denisova_centralasia2_snps.txt
allpop_component_category_counts_denisova_eastasia2_snps.txt
allpop_component_category_counts_denisova_oceania2_snps.txt
allpop_component_category_counts_denisova_southasia2_snps.txt
allpop_component_category_counts_denisova_westeurasia2_snps.txt
allpop_component_category_counts_eastasia_denisova_1minus2_snps.txt
allpop_component_category_counts_eastasia_neandertal_1minus2_snps.txt
allpop_component_category_counts_neandertal_america2_snps.txt
allpop_component_category_counts_neandertal_centralasia2_snps.txt
allpop_component_category_counts_neandertal_eastasia2_snps.txt
allpop_component_category_counts_neandertal_oceania2_snps.txt
allpop_component_category_counts_neandertal_southasia2_snps.txt
allpop_component_category_counts_neandertal_westeurasia2_snps.txt
allpop_component_category_counts_oceania_denisova_1minus2_snps.txt
allpop_component_category_counts_oceania_neandertal_1minus2_snps.txt
allpop_component_category_counts_southasia_denisova_1minus2_snps.txt
allpop_component_category_counts_southasia_neandertal_1minus2_snps.txt
allpop_component_category_counts_westeurasia_denisova_1minus2_snps.txt
allpop_component_category_counts_westeurasia_neandertal_1minus2_snps.txt
allpop_component_centralasia_denisova_1minus2_controls.txt
allpop_component_centralasia_neandertal_1minus2_controls.txt
allpop_component_denisova_america2_controls.txt
allpop_component_denisova_centralasia2_controls.txt
allpop_component_denisova_eastasia2_controls.txt
allpop_component_denisova_oceania2_controls.txt
allpop_component_denisova_southasia2_controls.txt
allpop_component_denisova_westeurasia2_controls.txt
allpop_component_eastasia_denisova_1minus2_controls.txt
allpop_component_eastasia_neandertal_1minus2_controls.txt
allpop_component_neandertal_america2_controls.txt
allpop_component_neandertal_centralasia2_controls.txt
allpop_component_neandertal_eastasia2_controls.txt
allpop_component_neandertal_oceania2_controls.txt
allpop_component_neandertal_southasia2_controls.txt
allpop_component_neandertal_westeurasia2_controls.txt
allpop_component_oceania_denisova_1minus2_controls.txt
allpop_component_oceania_neandertal_1minus2_controls.txt
allpop_component_southasia_denisova_1minus2_controls.txt
allpop_component_southasia_neandertal_1minus2_controls.txt
allpop_component_westeurasia_denisova_1minus2_controls.txt
allpop_component_westeurasia_neandertal_1minus2_controls.txt
allpops_denisova_1minus2_controls.txt
allpops_denisova_2_controls.txt
allpops_neandertal_1minus2_controls.txt
allpops_neandertal_2_controls.txt
america_combined_archaic_1minus2_snps.txt
america_denisova_1minus2_controls.txt
america_denisova_1minusboth2_snps.txt
america_neandertal_1minus2_controls.txt
america_neandertal_1minusboth2_snps.txt
bfsorted_allpop_component__neandertal_2_snps.txt
bfsorted_allpop_component_america_denisova_1minus2_snps.txt
bfsorted_allpop_component_america_denisova_2_snps.txt
bfsorted_allpop_component_america_neandertal_1minus2_snps.txt
bfsorted_allpop_component_america_neandertal_2_snps.txt
bfsorted_allpop_component_centralasia_denisova_1minus2_snps.txt
bfsorted_allpop_component_centralasia_denisova_2_snps.txt
bfsorted_allpop_component_centralasia_neandertal_1minus2_snps.txt
bfsorted_allpop_component_centralasia_neandertal_2_snps.txt
bfsorted_allpop_component_eastasia_denisova_1minus2_snps.txt
bfsorted_allpop_component_eastasia_denisova_2_snps.txt
bfsorted_allpop_component_eastasia_neandertal_1minus2_snps.txt
bfsorted_allpop_component_eastasia_neandertal_2_snps.txt
bfsorted_allpop_component_oceania_denisova_1minus2_snps.txt
bfsorted_allpop_component_oceania_denisova_2_snps.txt
bfsorted_allpop_component_oceania_neandertal_1minus2_snps.txt
bfsorted_allpop_component_oceania_neandertal_2_snps.txt
bfsorted_allpop_component_southasia_denisova_1minus2_snps.txt
bfsorted_allpop_component_southasia_denisova_2_snps.txt
bfsorted_allpop_component_southasia_neandertal_1minus2_snps.txt
bfsorted_allpop_component_southasia_neandertal_2_snps.txt
bfsorted_allpop_component_westeurasia_denisova_1minus2_snps.txt
bfsorted_allpop_component_westeurasia_denisova_2_snps.txt
bfsorted_allpop_component_westeurasia_neandertal_1minus2_snps.txt
bfsorted_allpop_component_westeurasia_neandertal_2_snps.txt
bstat_freq_sorted_america_denisova_1minus2_snps.txt
bstat_freq_sorted_america_neandertal_1minus2_snps.txt
bstat_freq_sorted_centralasia_denisova_1minus2_snps.txt
bstat_freq_sorted_centralasia_neandertal_1minus2_snps.txt
bstat_freq_sorted_denisova_america2_snps.txt
bstat_freq_sorted_denisova_centralasia2_snps.txt
bstat_freq_sorted_denisova_eastasia2_snps.txt
bstat_freq_sorted_denisova_oceania2_snps.txt
bstat_freq_sorted_denisova_southasia2_snps.txt
bstat_freq_sorted_denisova_westeurasia2_snps.txt
bstat_freq_sorted_eastasia_denisova_1minus2_snps.txt
bstat_freq_sorted_eastasia_neandertal_1minus2_snps.txt
bstat_freq_sorted_neandertal_america2_snps.txt
bstat_freq_sorted_neandertal_centralasia2_snps.txt
bstat_freq_sorted_neandertal_eastasia2_snps.txt
bstat_freq_sorted_neandertal_oceania2_snps.txt
bstat_freq_sorted_neandertal_southasia2_snps.txt
bstat_freq_sorted_neandertal_westeurasia2_snps.txt
bstat_freq_sorted_oceania_denisova_1minus2_snps.txt
bstat_freq_sorted_oceania_neandertal_1minus2_snps.txt
bstat_freq_sorted_southasia_denisova_1minus2_snps.txt
bstat_freq_sorted_southasia_neandertal_1minus2_snps.txt
bstat_freq_sorted_westeurasia_denisova_1minus2_snps.txt
bstat_freq_sorted_westeurasia_neandertal_1minus2_snps.txt
category_counts_america_denisova_1minus2_snps.txt
category_counts_america_neandertal_1minus2_snps.txt
category_counts_centralasia_denisova_1minus2_snps.txt
category_counts_centralasia_neandertal_1minus2_snps.txt
category_counts_denisova_america2_snps.txt
category_counts_denisova_centralasia2_snps.txt
category_counts_denisova_eastasia2_snps.txt
category_counts_denisova_oceania2_snps.txt
category_counts_denisova_southasia2_snps.txt
category_counts_denisova_westeurasia2_snps.txt
category_counts_eastasia_denisova_1minus2_snps.txt
category_counts_eastasia_neandertal_1minus2_snps.txt
category_counts_neandertal_america2_snps.txt
category_counts_neandertal_centralasia2_snps.txt
category_counts_neandertal_eastasia2_snps.txt
category_counts_neandertal_oceania2_snps.txt
category_counts_neandertal_southasia2_snps.txt
category_counts_neandertal_westeurasia2_snps.txt
category_counts_oceania_1minus2_snps.txt
category_counts_oceania_denisova_1minus2_snps.txt
category_counts_oceania_neandertal_1minus2_snps.txt
category_counts_southasia_denisova_1minus2_snps.txt
category_counts_southasia_neandertal_1minus2_snps.txt
category_counts_westeurasia_denisova_1minus2_snps.txt
category_counts_westeurasia_neandertal_1minus2_snps.txt
centralasia_combined_archaic_1minus2_snps.txt
centralasia_denisova_1minus2_controls.txt
centralasia_denisova_1minusboth2_snps.txt
centralasia_neandertal_1minus2_controls.txt
centralasia_neandertal_1minusboth2_snps.txt
compile_archaic_across_populs.py
count_1and2_neand_control_enhancers_exons.py
count_1and2_neand_control_enhancers_exons.py~
count_enhancers_onecelltype_plus_pleio_category.py
count_enhancers_onecelltype_plus_pleio_category.py~
count_enhancers_v_celltype_pleio_category.py
count_enhancers_v_celltype_pleio_category.py~
count_neand_control_celltypes.py
count_neand_control_celltypes.py~
denisova_allpops_2_snps_plus_bstat.txt
denisova_america2_controls.txt
denisova_america2_snps.txt
denisova_centralasia2_controls.txt
denisova_centralasia2_snps.txt
denisova_eastasia2_controls.txt
denisova_eastasia2_snps.txt
denisova_oceania2_controls.txt
denisova_oceania2_snps.txt
denisova_southasia2_controls.txt
denisova_southasia2_snps.txt
denisova_westeurasia2_controls.txt
denisova_westeurasia2_snps.txt
eastasia_combined_archaic_1minus2_snps.txt
eastasia_denisova_1minus2_controls.txt
eastasia_denisova_1minus2_snps.txt
eastasia_denisova_1minusboth2_snps.txt
eastasia_neandertal_1minus2_controls.txt
eastasia_neandertal_1minus2_snps.txt
eastasia_neandertal_1minusboth2_snps.txt
eastasiacombined_archaic_1minus2_snps.txt
get_1species_1minus2_snp_superset.py
get_1species_1minus2_snp_superset.py~
get_1species_combined1_controls.py
get_1species_combined1_controls.py~
get_archaic_and_controls.py
get_combined1_archaic_and_controls.py
get_combined1_controls.py
get_combined1_controls.py~
get_combined1_snp_superset.py
get_combined1_snp_superset.py~
get_control_snp_superset.py
get_control_snp_superset.py~
get_controls_compiled_across_populs.py
get_noncombined_1minus2_controls.py
get_old_nonshared_archaic2.py
get_private_neand_snps.py
get_private_neand_snps.py~
human_accelerated_enhancers_sorted.txt
linregress_allpops_archaic_v_oddsrare.py
linregress_nobrain_allpops_archaic_v_oddsrare.py
linregress_v_oddssingle.py
neandertal_allpops_2_snps_plus_bstat.txt
neandertal_america2_controls.txt
neandertal_america2_snps.txt
neandertal_centralasia2_controls.txt
neandertal_centralasia2_snps.txt
neandertal_eastasia2_controls.txt
neandertal_eastasia2_snps.txt
neandertal_oceania2_controls.txt
neandertal_oceania2_snps.txt
neandertal_southasia2_controls.txt
neandertal_southasia2_snps.txt
neandertal_westeurasia2_controls.txt
neandertal_westeurasia2_snps.txt
oceania_1minus2_controls.txt
oceania_combined_archaic_1minus2_snps.txt
oceania_denisova_1minus2_controls.txt
oceania_denisova_1minus2_snps.txt
oceania_denisova_1minusboth2_snps.txt
oceania_neandertal_1minus2_controls.txt
oceania_neandertal_1minus2_snps.txt
oceania_neandertal_1minusboth2_snps.txt
oceaniacombined_archaic_1minus2_snps.txt
plot_allpleio_allcelltypes_oddsNeand.py
plot_allpops_archaic_v_oddsrare.py
plot_allpops_archaic_v_oddsrare_wExon.py
plot_allpops_oddsNeand_v_oddsDenisovan.py
plot_allpops_wbrainmuscle_pleio_v_oddsNeand.py
plot_nean_plus_oceaniaden_v_pleio.py
plot_oddssingle_v_celltype_pleio.py
plot_onepop_oddsNeand_v_oddsDenisovan.py
rare_common_vars_alt_cell_types_enhancer_control.txt
rare_vars_v_celltype_pleio.txt
southasia_combined_archaic_1minus2_snps.txt
southasia_denisova_1minus2_controls.txt
southasia_denisova_1minus2_snps.txt
southasia_denisova_1minusboth2_snps.txt
southasia_neandertal_1minus2_controls.txt
southasia_neandertal_1minus2_snps.txt
southasia_neandertal_1minusboth2_snps.txt
southasiacombined_archaic_1minus2_snps.txt
westeurasia_combined_archaic_1minus2_snps.txt
westeurasia_denisova_1minus2_controls.txt
westeurasia_denisova_1minus2_snps.txt
westeurasia_denisova_1minusboth2_snps.txt
westeurasia_neandertal_1minus2_controls.txt
westeurasia_neandertal_1minus2_snps.txt
westeurasia_neandertal_1minusboth2_snps.txt
westeurasiacombined_archaic_1minus2_snps.txt
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