diff --git a/CHANGELOG.md b/CHANGELOG.md index ef46ba5..6cfbd23 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,4 +1,4 @@ -## [Upcoming] +## [0.5.0] — 2021-06-03 ### Changed diff --git a/Project.toml b/Project.toml index b7388ab..29a47dd 100644 --- a/Project.toml +++ b/Project.toml @@ -1,7 +1,7 @@ name = "Baysor" uuid = "cc9f9468-1fbe-11e9-0acf-e9460511877c" authors = ["Viktor Petukhov "] -version = "0.4.3" +version = "0.5.0" [deps] ArgParse = "c7e460c6-2fb9-53a9-8c5b-16f535851c63" diff --git a/README.md b/README.md index 93b3df4..25e6c18 100644 --- a/README.md +++ b/README.md @@ -3,11 +3,10 @@ # Baysor -**Bay**esian **S**egmentation **o**f Spatial T**r**anscriptomics Data +**Bay**esian **s**egmentation **o**f imaging-based spatial t**r**anscriptomics data -- [News ([0.4.3] — 2021-04-06)](#news-043--2021-04-06) -- [Abstract](#abstract) - - [Method description](#method-description) +- [News ([0.5.0] — 2021-06-03)](#news-050--2021-06-03) +- [Overview](#overview) - [Installation](#installation) - [Install as a Julia package](#install-as-a-julia-package) - [Build CLI application from source](#build-cli-application-from-source) @@ -17,16 +16,16 @@ - [Full run](#full-run) - [Normal run](#normal-run) - [Using a prior segmentation](#using-a-prior-segmentation) + - [Segmenting stains](#segmenting-stains) + - [Segmenting cells with pronounced intracellular structure](#segmenting-cells-with-pronounced-intracellular-structure) - [Outputs](#outputs) - [Choice of parameters](#choice-of-parameters) - - [Multi-threading](#multi-threading) -## News ([0.4.3] — 2021-04-06) +## News ([0.5.0] — 2021-06-03) -- Improved molecule clustering -- Added the option `--save-polygons=GeoJSON` to save cell boundary polygons in the GeoJSON format -- Fixed plotting performance -- Estimating scale when prior segmentation is provided as a CSV column +- 3D segmentation +- Core algorithm improvement +- Segmentation of cell compartments *See the [changelog](CHANGELOG.md) for more detalis.*