Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

support label created from your qupath-extension-sam to make prompt for qupath-extension-cellsparse in Batch annotation task #4

Open
aiyou9 opened this issue Jul 1, 2023 · 1 comment

Comments

@aiyou9
Copy link

aiyou9 commented Jul 1, 2023

the great segment from SAM may be used to prompt for qupath-extension-cellsparse in Batch annotation task, but I donnot know which cellsparse used for prompt in cellsparse in Batch annotation

@ksugar
Copy link
Owner

ksugar commented Aug 4, 2023

Hi @aiyou9, sorry for the late reply.
The annotations you made with SAM and other manual/automated workflows in QuPath can be used to train all the cellsparse models. One thing you need to care about is that you assign the Foreground path class for foreground annotations and the Background path class for background annotations.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants