DESCRIPTION

Package: CRBHits
Title: Conditional reciprocal best hits (CRBHits) in R
Version: 0.0.8
Authors@R: 
    person(given = "Kristian K",
           family = "Ullrich",
           role = c("aut", "cre"),
           email = "ullrich@evolbio.mpg.de",
           comment = c(ORCID = "0000-0003-4308-9626"))
Description: CRBHits calculates conditional reciprocal best hit (CRBHit) pairs
    and subsequently can classify tandem duplicates, assign syntney groups and
    calculate Ka/Ks values.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: false
Depends:
  R (>= 4.4.0)
Imports:
  Biostrings,
  MSA2dist (>= 1.9.0),
  curl,
  doParallel,
  dplyr,
  foreach,
  ggplot2,
  graphics,
  gridExtra,
  grDevices,
  methods,
  parallel,
  readr,
  rlang,
  stats,
  stringr,
  tidyr,
  utils
Suggests:
  ape,
  rmarkdown,
  knitr,
  devtools,
  seqinr,
  stringi,
  testthat,
  tibble
VignetteBuilder: knitr
biocViews: Software, Alignment, Genetics
NeedsCompilation: yes
SystemRequirements:
  LAST (https://anaconda.org/bioconda/last),
  DAGchainer (https://anaconda.org/bioconda/dagchainer),
  GNU make,
  libcurl (deb: libcurl4-openssl-dev or CentOS: libcurl-devel),
  openssl (deb: libssl-dev or CentOS: openssl-devel),
  libxml2 (deb: libxml2-dev or CentOS: libxml2-devel),
  libGLU (deb: libglu1-mesa-dev or CentOS: mesa-libGLU-devel),
  libgit2-devel (deb: libgit2-dev or CentOS: libgit2-devel)
URL:
  https://github.com/kullrich/CRBHits,
  https://kullrich.github.io/CRBHits/
BugReports: https://github.com/kullrich/CRBHits/issues
RoxygenNote: 7.3.2