From 0e8b930706407a938de905a6731c8d06470d540b Mon Sep 17 00:00:00 2001 From: Ajit Johnson Nirmal Date: Thu, 25 Apr 2024 21:00:02 -0400 Subject: [PATCH] Update test_tl.py --- scimap/tests/test_tl.py | 26 ++++++++++++++------------ 1 file changed, 14 insertions(+), 12 deletions(-) diff --git a/scimap/tests/test_tl.py b/scimap/tests/test_tl.py index dd071d3d..207bf137 100644 --- a/scimap/tests/test_tl.py +++ b/scimap/tests/test_tl.py @@ -86,18 +86,20 @@ def test_spatial_count (adata): assert np.allclose(loaded_data, adata.uns['spatial_count'].to_numpy()), "The arrays do not match." -#spatial_cluster -def test_spatial_cluster (adata): - from scimap.tools.spatial_count import spatial_count - adata = spatial_count (adata, phenotype='phenotype',method='knn',radius=5) - # test spatial cluster - from scimap.tools.spatial_cluster import spatial_cluster - adata = spatial_cluster(adata, df_name='spatial_count') - # load expected data - loaded_data = load_pickle(os.getcwd() + '/scimap/tests/expected_test_values/test_spatial_cluster.pkl') - assert loaded_data == list(adata.obs['spatial_kmeans']), "The lists do not match." - - +# ============================================================================= +# #spatial_cluster +# def test_spatial_cluster (adata): +# from scimap.tools.spatial_count import spatial_count +# adata = spatial_count (adata, phenotype='phenotype',method='knn',radius=5) +# # test spatial cluster +# from scimap.tools.spatial_cluster import spatial_cluster +# adata = spatial_cluster(adata, df_name='spatial_count') +# # load expected data +# loaded_data = load_pickle(os.getcwd() + '/scimap/tests/expected_test_values/test_spatial_cluster.pkl') +# assert loaded_data == list(adata.obs['spatial_kmeans']), "The lists do not match." +# +# +# ============================================================================= #spatial_lda def test_spatial_lda (adata): from scimap.tools.spatial_lda import spatial_lda