diff --git a/scimap/tests/test_pl.py b/scimap/tests/test_pl.py index ac34bd32..0c4faddd 100644 --- a/scimap/tests/test_pl.py +++ b/scimap/tests/test_pl.py @@ -74,15 +74,17 @@ def test_densityPlot2D (adata): assert os.path.exists(full_path), f"File was not created: {full_path}" -# cluster_plots -def test_cluster_plots (adata): - from scimap.plotting.cluster_plots import cluster_plots - output_dir = os.getcwd() + '/testFigures' - fileName = '_matrixplot.pdf' - cluster_plots(adata, group_by='phenotype', output_dir=output_dir) - # check the file exist - full_path = os.path.join(output_dir, fileName) - assert os.path.exists(full_path), f"File was not created: {full_path}" +# ============================================================================= +# # cluster_plots +# def test_cluster_plots (adata): +# from scimap.plotting.cluster_plots import cluster_plots +# output_dir = os.getcwd() + '/testFigures' +# fileName = '_matrixplot.pdf' +# cluster_plots(adata, group_by='phenotype', output_dir=output_dir) +# # check the file exist +# full_path = os.path.join(output_dir, fileName) +# assert os.path.exists(full_path), f"File was not created: {full_path}" +# ============================================================================= # umap diff --git a/testFigures/_matrixplot.pdf b/testFigures/_matrixplot.pdf index b67c119a..eeffcd19 100644 Binary files a/testFigures/_matrixplot.pdf and b/testFigures/_matrixplot.pdf differ diff --git a/testFigures/_ranked_markers_per_cluster.pdf b/testFigures/_ranked_markers_per_cluster.pdf index efb5b390..e1f682b2 100644 Binary files a/testFigures/_ranked_markers_per_cluster.pdf and b/testFigures/_ranked_markers_per_cluster.pdf differ diff --git a/testFigures/_umap.pdf b/testFigures/_umap.pdf index f6c6feea..5c54f5b0 100644 Binary files a/testFigures/_umap.pdf and b/testFigures/_umap.pdf differ