diff --git a/scimap/helpers/classify.py b/scimap/helpers/classify.py index 77f360e7..529bbcb2 100644 --- a/scimap/helpers/classify.py +++ b/scimap/helpers/classify.py @@ -131,7 +131,7 @@ def classify (adata, classify_idx=data.index classified = pd.DataFrame(non_summary.loc[data.index]) #subsets phenotype rows to only classified cells - if showPhenotypeLabel: + if showPhenotypeLabel is True: classified[phenotype_label] = classified[phenotype]+"_"+classify_label # add phenotype_label col classified[label]=pd.DataFrame(np.repeat(classify_label, len(classify_idx)), index = classify_idx) # add label col classified.drop([phenotype], axis='columns', inplace=True) # drop phenotype col, for merge