Release 0.76.6

See https://docs.lamin.ai/changelog/2024#db-0-76-6-bionty-0-50

What's Changed

• 🐛 Fix query for latest version in manual transform constructor by @falexwolf in #1900
• ✨ lamin get via key or uid by @falexwolf in #1901
• 📝 Move introduction to lamin-docs by @falexwolf in #1902
• 👷 Speed up tests by @falexwolf in #1903
• ♻️ Replace inheriting from HasFeatures & HasParams with composition by @falexwolf in #1904
• 🎨 Replace relation of Collection to FeatureSet with indirect relation through Artifact by @falexwolf in #1905
• 🔥 Remove deprecated artifact.backed() by @falexwolf in #1907
• 🚸 Better logging during transfer, describe, track() and raise an error if transferring outdated artifact by @falexwolf in #1908
• ⬆️ Upgrade *-artifact actions by @Koncopd in #1909
• 📝 Fix all registry docs by @falexwolf in #1910
• ⬆️ Update bionty by @sunnyosun in #1911
• 🐛 Fix collection.describe() by @falexwolf in #1912
• ✨ Enable negations in filter(), improve registries guide by @falexwolf in #1913
• 🐛 Reload transform upon passing same uid by @falexwolf in #1915
• 🐛 Fix parents update by @sunnyosun in #1917

Full Changelog: 0.76.5...0.76.6

Release 0.76.5

See https://docs.lamin.ai/changelog#db-0-76-5

What's Changed

• ✅ Test user input for CLI & improve Context docs by @falexwolf in #1895
• ♻️ Give save_vitessce_config a deterministic uid by @falexwolf in #1897
• 🐛 noxfile: fix "install" session by @ap-- in #1898
• ✨ Allow login with Beta API key via CLI by @Koncopd in #1896

New Contributors

• @ap-- made their first contribution in #1898

Full Changelog: 0.76.4...0.76.5

Release 0.76.4

See https://docs.lamin.ai/changelog/2024#db-0-76-4

What's Changed

• ⬆️ Upgrade anndata to 0.10.9 by @Koncopd in #1875
• 💚 Fix hub tests by @falexwolf in #1881
• 📝 Document inherited class members by @falexwolf in #1882
• 📝 Link laminr and fix docs by @falexwolf in #1883
• 🐛 Add check for categorical and source keys in Curate by @Zethson in #1880
• ⚡️ Improvements to save_tiledbsoma_experiment by @Koncopd in #1885
• 🐛 Fix key check in curate by @sunnyosun in #1887
• ⬆️ Update lamindb-setup by @sunnyosun in #1888
• ⚡️Reduce similar records limit from 20 to 3 by @Zethson in #1889
• 🚸 Make source code searchable by @falexwolf in #1855
• ✨ Support lists as values in validation by @sunnyosun in #1890
• ♻️ Refactor passing an internal storage path by @falexwolf in #1891
• 🐛 Fix list concat by @sunnyosun in #1892
• 🐛 Fix list concat by @sunnyosun in #1893
• 🐛 Fix marking latest transform as is_latest by @falexwolf in #1894

Full Changelog: 0.76.3...0.76.4

Release 0.76.3

See https://docs.lamin.ai/changelog

What's Changed

• 📝 Re-work introduction by @falexwolf in #1844
• 🔥 Remove lamin register command, legacy login password, and prettify docs by @falexwolf in #1846
• 📝 Add reference to cxg in from_anndata by @Zethson in #1841
• ♻️ New tiledbsoma API: save_tiledbsoma_experiment by @Koncopd in #1842
• ✅ Split unit tests into unit-core and unit-storage by @Koncopd in #1847
• 🔇 Remove AnnData mutation warnings in save_tiledbsoma_experiment by @Koncopd in #1849
• 🎨 Improve ln.finish() error message by @Zethson in #1850
• 🐛Fix finish calling statement by @Zethson in #1852
• 🎨 Move the source FK to BioRecord by @sunnyosun in #1853
• 📝 Improve the curate-df guide by @falexwolf in #1859
• 🚚 Deprecate Curate in favor of Curator and make CuratorBase the base class of DataFrameCurator by @sunnyosun in #1864
• 👷 Add issue templates by @Zethson in #1854
• Attempt to keep issue template config file formatting by @Zethson in #1865
• ♻️ Change signature of save_tiledbsoma_experiment by @Koncopd in #1870
• 🐛 Make .get() aware of trash again by @falexwolf in #1871
• 🐛 Check for csc_matrix in MappedCollection and raise error by @Koncopd in #1874
• ♻️ Increase max chars of version field and fix UserDoesNotExist by @falexwolf in #1872
• ♻️ Use ln.Curator instead of ln.Curate by @Koncopd in #1877
• ⬆️ Upgrade lamindb-setup by @Koncopd in #1876
• 🐛 Fix validating no passed categoricals by @Zethson in #1869
• 🐛 Fix curate exclude by @sunnyosun in #1878
• 🐛 Fix curate by @sunnyosun in #1879

Full Changelog: 0.76.2...0.76.3

Release 0.76.2

See https://docs.lamin.ai/changelog

What's Changed

• 📝Minor docstring improvements by @Zethson in #1820
• 📝Use RST to render headers for lamindb API summary by @Zethson in #1822
• ✨ API to create and append to tiledbsoma stores by @Koncopd in #1823
• ✨ Allow add source to entity by @sunnyosun in #1824
• 📝 Simplify introduction by @falexwolf in #1828
• ♻️ Replace .filter(...).one() with .get(...) by @falexwolf in #1829
• ✨ Improve tiledbsoma integration by @Koncopd in #1827
• 💄 Simpler icons by @sunnyosun in #1832
• 🎨 Add finished_at to vitessce runs by @sunnyosun in #1834
• 🐛 Fix passing source to curate.add_from_validated by @sunnyosun in #1838
• 🎨Fix Future Pandas rename categoricals warning by @Zethson in #1840
• 🚸 Enable versioning artifacts based on key akin to the AWS S3 behavior by @falexwolf in #1839

Full Changelog: 0.76.1...0.76.2

Release 0.76.1

See https://docs.lamin.ai/changelog

What's Changed

• 🐛Fix Papalexi missing hto:technique by @Zethson in #1813
• ✨ New features for MappedCollection by @Koncopd in #1812
• 🚸 Update .get() to accept expressions by @falexwolf in #1815
• 🚸 Overhauled context tracking experience with ln.context.track() by @falexwolf in #1816
• 🐛 Fix tuple from init_storage by @Koncopd in #1817
• ⬆️ Update bionty by @sunnyosun in #1818

Full Changelog: 0.76.0...0.76.1

Release 0.76.0

See https://docs.lamin.ai/changelog

What's Changed

• 🐛 Fix Feature constructor error message by @Zethson in #1804
• 🎨 Make some more backward accessors private and type the rest by @falexwolf in #1805
• 🎨 Adopt new MuDat push/pull interface by @Zethson in #1807
• ⚡️ Speed up BioRecord.import_from_source by @sunnyosun in #1808
• ⚡️ Add boolean field IsVersioned.is_latest to speed up queries for latest versions by @falexwolf in #1811

Full Changelog: 0.75.1...0.76.0

Release 0.75.1

What's Changed

• ✨ Improve bio-registry tutorial wording by @Zethson in #1783
• 🐛 Fix using_key for source and organism by @sunnyosun in #1784
• 🚚 Rename RecordMeta to Registry by @falexwolf in #1785
• ♻️ Replace ORM with Record or Registry by @falexwolf in #1791
• 🐛 Fix validate message by @Zethson in #1794
• 🐛 Fix var_index validation by @sunnyosun in #1790
• ✏️ Ensure list is passed to from_values by @sunnyosun in #1796
• 📝 Improve curate docs by @Zethson in #1795
• ✏️ Fix mudata validate by @sunnyosun in #1797
• ✨ Allow exclude values in Curate.validate by @sunnyosun in #1798
• 🚸 In Vitessce integration, enable a Vitessce button next to a dataset, also, document valid suffixes by @falexwolf in #1799
• ⬆️ Release submodules by @sunnyosun in #1803

Full Changelog: 0.75.0...0.75.1

Release 0.75.0

See https://docs.lamin.ai/changelog

What's Changed

• 🚚 Rename PublicSource to Source by @sunnyosun in #1755
• 👷 Add a contributing guide, make installation from GitHub easier by @falexwolf in #1760
• 🏗️ Integrate lnschema-bionty and bionty-base into bionty by @sunnyosun in #1757
• ⬆️ Bump ruff by @falexwolf in #1763
• ⬆️ Release submodules by @sunnyosun in #1766
• 🎨 Enable deleting artifacts in all managed storage locations of the current instance by @falexwolf in #1762
• ✨ Better error message for synonym duplications by @Zethson in #1764
• 🐛 Fix parents save by @sunnyosun in #1767
• ✨ Add more details to contributors guide by @Zethson in #1769
• ♻️ Simplify bio-registries guide by @sunnyosun in #1770
• ♻️ Refactor ontology_id field recognition by @sunnyosun in #1771
• 🚚 Rename save_from_df to import_from_source by @sunnyosun in #1772
• 🚚 Rename from_public to from_source by @sunnyosun in #1773
• ♻️ Refactor Source model by @sunnyosun in #1774
• Fix create message by @Zethson in #1777
• 🚚 Rename .sources() to .list_source() by @sunnyosun in #1775
• 🚚 Migrations for 0.75 by @falexwolf in #1768
• 🔧Fix Ruff configuration in pyproject.toml by @Zethson in #1780
• 💚 Fixes by @falexwolf in #1782
• ✨ Track write operations on array stores by @Koncopd in #1756
• 🎨 Fix passing source to .validate and .inspect by @sunnyosun in #1781

Full Changelog: 0.74.3...0.75.0

Release 0.74.3

See https://docs.lamin.ai/changelog

What's Changed

• ⚡️ Speed up parents by @sunnyosun in #1750
• ⬆️ Upgrade to pydantic v2 by @falexwolf in #1752
• ♻️ Reorganize hub client so that storage table in hub can get an instance FK by @falexwolf in #1753
• ✨ Add add_from_df method to BioRecord by @sunnyosun in #1754

Full Changelog: 0.74.2...0.74.3