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mRNA representation #14

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Hrovatin opened this issue Jul 1, 2024 · 0 comments
Open

mRNA representation #14

Hrovatin opened this issue Jul 1, 2024 · 0 comments

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@Hrovatin
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Hrovatin commented Jul 1, 2024

After reading the paper I am unsure if this model can be directly used for mRNA representation without fine-tuning.
Namely, the training data contains no mRNAs (if I understand correctly). However, the model was then FT on mRNA tasks.
1.) May I ask why mRNAs were not used in pre-training - what is the reason for that?
2.) Did you check masking performance on different sequence types including mRNAs? Similar as for structure prediction, although mRNAs were also missing there.

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