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Hi, I don't have the best understanding of what this software is doing, I'm just an admin. I got it compiled via Rust, I think, and followed the environment setup (LIBTORCH and LD_LIBRARY_PATH), but running the demo sequence given in the github repo at demo/README causes a panic and fails:
herro inference -t 4 -m model_R10_v0.1.pt -d 2 -b 32 HG002.chr19_10M_12M.fastq.gz output.fasta
[00:00:00] Parsed 1177 reads. [00:00:00] Processing 1/? batch ⠂ thread '<unnamed>' panicked at /opt/apps/herro/herro/src/mm2.rs:37:10:
Failed to start echo process: Os { code: 2, kind: NotFound, message: "No such file or directory" }
stack backtrace:
0: rust_begin_unwind
1: core::panicking::panic_fmt
2: core::result::unwrap_failed
3: herro::mm2::call_mm2
4: <core::iter::adapters::map::Map<I,F> as core::iter::traits::iterator::Iterator>::next
5: herro::overlaps::alignment_reader
note: Some details are omitted, run with `RUST_BACKTRACE=full` for a verbose backtrace.
Aborted (core dumped)
I'm still looking into what's going on, as I'm assuming the issue is with my own lack of knowledge on herro, Rust, every part of this really. Figured I'd post it here as well.
The text was updated successfully, but these errors were encountered:
Hi, I don't have the best understanding of what this software is doing, I'm just an admin. I got it compiled via Rust, I think, and followed the environment setup (LIBTORCH and LD_LIBRARY_PATH), but running the demo sequence given in the github repo at demo/README causes a panic and fails:
Here's the full backtrace:
I'm still looking into what's going on, as I'm assuming the issue is with my own lack of knowledge on herro, Rust, every part of this really. Figured I'd post it here as well.
The text was updated successfully, but these errors were encountered: