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Reintegrate tracking ID #133

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1 of 3 tasks
jbusecke opened this issue Apr 24, 2024 · 2 comments
Open
1 of 3 tasks

Reintegrate tracking ID #133

jbusecke opened this issue Apr 24, 2024 · 2 comments
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testing

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@jbusecke
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jbusecke commented Apr 24, 2024 •
edited
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Just looking over the original docs for the zarr stores here:
https://pangeo-data.github.io/pangeo-cmip6-cloud/overview.html#zarr-storage-format

  • Reconstruct handle id from separate datasets (this can likely be handled by providing a custom func for metadata-combination)
  • Add a check for this to the Tests
  • Consider rerunning QC, flagging stores w/o and rerunning the recipes (should probably be timed with a new release?).

We should add the handle_id concatenation to our recipes.

This should also be coordinated with jbusecke/esgf-virtual-zarr-data-access#6 so that the output looks exactly the same to the user!
This was referenced May 6, 2024
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@jbusecke
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jbusecke commented May 7, 2024

Ok so in the newest run over at #145 I am able to ingest pretty much whatever I want from the file level like this:

import xarray as xr
ds = xr.open_dataset("gs://leap-scratch/data-library/cmip6-pr-copied/8979323652_1/CMIP6.HighResMIP.CMCC.CMCC-CM2-VHR4.highres-future.r1i1p1f1.6hrPlevPt.psl.gn.v20190509.zarr", engine='zarr')
ds.attrs['pangeo_forge_file_data']
{'checksum': [['6619b7522b9595714ea5c502d2681357e5f913431950fcfe1146289e144b350e'],
  ['a52dca9f7b0e3453f2d3c6bcc0a9437632d6207df624f729b4260a535a3cd23c'],
  ['e1c9f8ceb133b2bace66fcc51b03df1308f7bb31328af22709f0b2a0cbdc9032'],
  ['412d05bdcfe8aaeaa0d45ca7771e50cbb71adb628cf5900aebd9fe2456925b98'],
  ['2475a1bea861704589bfde45bbbf3072d6c809319d9492621375f5140bed9940'],
  ['62f83110ffc9ad8e03352dd500040864ab1994d98f155a3db441b1973e6f76c5'],
  ['289c4613e27ca0f1b98d9a71d063acf51f7a9294bdc40001557747c776e6401c'],
  ['a99f40333c6816933349ef0cd564432cab789a03ca303a265b199f389ed03fe9'],
  ['fc580bce392e3aff0e6ed182da6871c2f02907c7760ad6c3eb93ddc1a0698e71'],
  ['665b97fe0b5e2215cc1414520874c44eae556474612ae0fcab16f67d1a341de3']],
 'checksum_type': [['SHA256'],
  ['SHA256'],
  ['SHA256'],
  ['SHA256'],
  ['SHA256'],
  ['SHA256'],
  ['SHA256'],
  ['SHA256'],
  ['SHA256'],
  ['SHA256']],
 'citation_url': [['http://cera-www.dkrz.de/WDCC/meta/CMIP6/CMIP6.HighResMIP.CMCC.CMCC-CM2-VHR4.highres-future.r1i1p1f1.6hrPlevPt.psl.gn.v20190509.json'],
  ['http://cera-www.dkrz.de/WDCC/meta/CMIP6/CMIP6.HighResMIP.CMCC.CMCC-CM2-VHR4.highres-future.r1i1p1f1.6hrPlevPt.psl.gn.v20190509.json'],
  ['http://cera-www.dkrz.de/WDCC/meta/CMIP6/CMIP6.HighResMIP.CMCC.CMCC-CM2-VHR4.highres-future.r1i1p1f1.6hrPlevPt.psl.gn.v20190509.json'],
  ['http://cera-www.dkrz.de/WDCC/meta/CMIP6/CMIP6.HighResMIP.CMCC.CMCC-CM2-VHR4.highres-future.r1i1p1f1.6hrPlevPt.psl.gn.v20190509.json'],
  ['http://cera-www.dkrz.de/WDCC/meta/CMIP6/CMIP6.HighResMIP.CMCC.CMCC-CM2-VHR4.highres-future.r1i1p1f1.6hrPlevPt.psl.gn.v20190509.json'],
  ['http://cera-www.dkrz.de/WDCC/meta/CMIP6/CMIP6.HighResMIP.CMCC.CMCC-CM2-VHR4.highres-future.r1i1p1f1.6hrPlevPt.psl.gn.v20190509.json'],
  ['http://cera-www.dkrz.de/WDCC/meta/CMIP6/CMIP6.HighResMIP.CMCC.CMCC-CM2-VHR4.highres-future.r1i1p1f1.6hrPlevPt.psl.gn.v20190509.json'],
  ['http://cera-www.dkrz.de/WDCC/meta/CMIP6/CMIP6.HighResMIP.CMCC.CMCC-CM2-VHR4.highres-future.r1i1p1f1.6hrPlevPt.psl.gn.v20190509.json'],
  ['http://cera-www.dkrz.de/WDCC/meta/CMIP6/CMIP6.HighResMIP.CMCC.CMCC-CM2-VHR4.highres-future.r1i1p1f1.6hrPlevPt.psl.gn.v20190509.json'],
  ['http://cera-www.dkrz.de/WDCC/meta/CMIP6/CMIP6.HighResMIP.CMCC.CMCC-CM2-VHR4.highres-future.r1i1p1f1.6hrPlevPt.psl.gn.v20190509.json']],
 'data_node': ['esgf.ceda.ac.uk',
  'esgf.ceda.ac.uk',
  'esgf.ceda.ac.uk',
  'esgf.ceda.ac.uk',
  'esgf.ceda.ac.uk',
  'esgf.ceda.ac.uk',
  'esgf.ceda.ac.uk',
  'esgf.ceda.ac.uk',
  'esgf.ceda.ac.uk',
  'esgf.ceda.ac.uk'],
 'further_info_url': [['https://furtherinfo.es-doc.org/CMIP6.CMCC.CMCC-CM2-VHR4.highres-future.none.r1i1p1f1'],
  ['https://furtherinfo.es-doc.org/CMIP6.CMCC.CMCC-CM2-VHR4.highres-future.none.r1i1p1f1'],
  ['https://furtherinfo.es-doc.org/CMIP6.CMCC.CMCC-CM2-VHR4.highres-future.none.r1i1p1f1'],
  ['https://furtherinfo.es-doc.org/CMIP6.CMCC.CMCC-CM2-VHR4.highres-future.none.r1i1p1f1'],
  ['https://furtherinfo.es-doc.org/CMIP6.CMCC.CMCC-CM2-VHR4.highres-future.none.r1i1p1f1'],
  ['https://furtherinfo.es-doc.org/CMIP6.CMCC.CMCC-CM2-VHR4.highres-future.none.r1i1p1f1'],
  ['https://furtherinfo.es-doc.org/CMIP6.CMCC.CMCC-CM2-VHR4.highres-future.none.r1i1p1f1'],
  ['https://furtherinfo.es-doc.org/CMIP6.CMCC.CMCC-CM2-VHR4.highres-future.none.r1i1p1f1'],
  ['https://furtherinfo.es-doc.org/CMIP6.CMCC.CMCC-CM2-VHR4.highres-future.none.r1i1p1f1'],
  ['https://furtherinfo.es-doc.org/CMIP6.CMCC.CMCC-CM2-VHR4.highres-future.none.r1i1p1f1']],
 'id': ['CMIP6.HighResMIP.CMCC.CMCC-CM2-VHR4.highres-future.r1i1p1f1.6hrPlevPt.psl.gn.v20190509.psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201501010000-201501311800.nc|esgf.ceda.ac.uk',
  'CMIP6.HighResMIP.CMCC.CMCC-CM2-VHR4.highres-future.r1i1p1f1.6hrPlevPt.psl.gn.v20190509.psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201502010000-201502281800.nc|esgf.ceda.ac.uk',
  'CMIP6.HighResMIP.CMCC.CMCC-CM2-VHR4.highres-future.r1i1p1f1.6hrPlevPt.psl.gn.v20190509.psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201503010000-201503311800.nc|esgf.ceda.ac.uk',
  'CMIP6.HighResMIP.CMCC.CMCC-CM2-VHR4.highres-future.r1i1p1f1.6hrPlevPt.psl.gn.v20190509.psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201504010000-201504301800.nc|esgf.ceda.ac.uk',
  'CMIP6.HighResMIP.CMCC.CMCC-CM2-VHR4.highres-future.r1i1p1f1.6hrPlevPt.psl.gn.v20190509.psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201505010000-201505311800.nc|esgf.ceda.ac.uk',
  'CMIP6.HighResMIP.CMCC.CMCC-CM2-VHR4.highres-future.r1i1p1f1.6hrPlevPt.psl.gn.v20190509.psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201506010000-201506301800.nc|esgf.ceda.ac.uk',
  'CMIP6.HighResMIP.CMCC.CMCC-CM2-VHR4.highres-future.r1i1p1f1.6hrPlevPt.psl.gn.v20190509.psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201507010000-201507311800.nc|esgf.ceda.ac.uk',
  'CMIP6.HighResMIP.CMCC.CMCC-CM2-VHR4.highres-future.r1i1p1f1.6hrPlevPt.psl.gn.v20190509.psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201508010000-201508311800.nc|esgf.ceda.ac.uk',
  'CMIP6.HighResMIP.CMCC.CMCC-CM2-VHR4.highres-future.r1i1p1f1.6hrPlevPt.psl.gn.v20190509.psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201509010000-201509301800.nc|esgf.ceda.ac.uk',
  'CMIP6.HighResMIP.CMCC.CMCC-CM2-VHR4.highres-future.r1i1p1f1.6hrPlevPt.psl.gn.v20190509.psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201510010000-201510311800.nc|esgf.ceda.ac.uk'],
 'instance_id': ['CMIP6.HighResMIP.CMCC.CMCC-CM2-VHR4.highres-future.r1i1p1f1.6hrPlevPt.psl.gn.v20190509.psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201501010000-201501311800.nc',
  'CMIP6.HighResMIP.CMCC.CMCC-CM2-VHR4.highres-future.r1i1p1f1.6hrPlevPt.psl.gn.v20190509.psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201502010000-201502281800.nc',
  'CMIP6.HighResMIP.CMCC.CMCC-CM2-VHR4.highres-future.r1i1p1f1.6hrPlevPt.psl.gn.v20190509.psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201503010000-201503311800.nc',
  'CMIP6.HighResMIP.CMCC.CMCC-CM2-VHR4.highres-future.r1i1p1f1.6hrPlevPt.psl.gn.v20190509.psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201504010000-201504301800.nc',
  'CMIP6.HighResMIP.CMCC.CMCC-CM2-VHR4.highres-future.r1i1p1f1.6hrPlevPt.psl.gn.v20190509.psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201505010000-201505311800.nc',
  'CMIP6.HighResMIP.CMCC.CMCC-CM2-VHR4.highres-future.r1i1p1f1.6hrPlevPt.psl.gn.v20190509.psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201506010000-201506301800.nc',
  'CMIP6.HighResMIP.CMCC.CMCC-CM2-VHR4.highres-future.r1i1p1f1.6hrPlevPt.psl.gn.v20190509.psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201507010000-201507311800.nc',
  'CMIP6.HighResMIP.CMCC.CMCC-CM2-VHR4.highres-future.r1i1p1f1.6hrPlevPt.psl.gn.v20190509.psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201508010000-201508311800.nc',
  'CMIP6.HighResMIP.CMCC.CMCC-CM2-VHR4.highres-future.r1i1p1f1.6hrPlevPt.psl.gn.v20190509.psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201509010000-201509301800.nc',
  'CMIP6.HighResMIP.CMCC.CMCC-CM2-VHR4.highres-future.r1i1p1f1.6hrPlevPt.psl.gn.v20190509.psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201510010000-201510311800.nc'],
 'pid': [['hdl:21.14100/bb2e98c8-f461-3adc-95b2-d6666ce904ff'],
  ['hdl:21.14100/bb2e98c8-f461-3adc-95b2-d6666ce904ff'],
  ['hdl:21.14100/bb2e98c8-f461-3adc-95b2-d6666ce904ff'],
  ['hdl:21.14100/bb2e98c8-f461-3adc-95b2-d6666ce904ff'],
  ['hdl:21.14100/bb2e98c8-f461-3adc-95b2-d6666ce904ff'],
  ['hdl:21.14100/bb2e98c8-f461-3adc-95b2-d6666ce904ff'],
  ['hdl:21.14100/bb2e98c8-f461-3adc-95b2-d6666ce904ff'],
  ['hdl:21.14100/bb2e98c8-f461-3adc-95b2-d6666ce904ff'],
  ['hdl:21.14100/bb2e98c8-f461-3adc-95b2-d6666ce904ff'],
  ['hdl:21.14100/bb2e98c8-f461-3adc-95b2-d6666ce904ff']],
 'title': ['psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201501010000-201501311800.nc',
  'psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201502010000-201502281800.nc',
  'psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201503010000-201503311800.nc',
  'psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201504010000-201504301800.nc',
  'psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201505010000-201505311800.nc',
  'psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201506010000-201506301800.nc',
  'psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201507010000-201507311800.nc',
  'psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201508010000-201508311800.nc',
  'psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201509010000-201509301800.nc',
  'psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201510010000-201510311800.nc'],
 'tracking_id': [['hdl:21.14100/17d1228c-4821-41c0-b81c-bcc885f22674'],
  ['hdl:21.14100/67a26fb7-f72e-439f-a65a-f9a51a21827f'],
  ['hdl:21.14100/d99b9ada-bf5f-4e15-9d35-9600f0df8161'],
  ['hdl:21.14100/b2a063be-9759-4a9b-8a85-f62261966df1'],
  ['hdl:21.14100/db3191c0-8027-4c34-9bdd-435f1806c404'],
  ['hdl:21.14100/2b50a6f3-8018-4a47-ae2b-90f99948ee4e'],
  ['hdl:21.14100/1743b1e0-1d5d-4584-a8ae-a9f153bafdea'],
  ['hdl:21.14100/79ee082d-21d2-42a7-b129-822ea800b847'],
  ['hdl:21.14100/6aa7761b-3408-4bf9-8711-bae94dda2674'],
  ['hdl:21.14100/4ce1c9ab-acaa-48bc-8404-cf57e37a7011']],
 'url': ['https://esgf.ceda.ac.uk/thredds/fileServer/esg_cmip6/CMIP6/HighResMIP/CMCC/CMCC-CM2-VHR4/highres-future/r1i1p1f1/6hrPlevPt/psl/gn/v20190509/psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201501010000-201501311800.nc',
  'https://esgf.ceda.ac.uk/thredds/fileServer/esg_cmip6/CMIP6/HighResMIP/CMCC/CMCC-CM2-VHR4/highres-future/r1i1p1f1/6hrPlevPt/psl/gn/v20190509/psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201502010000-201502281800.nc',
  'https://esgf.ceda.ac.uk/thredds/fileServer/esg_cmip6/CMIP6/HighResMIP/CMCC/CMCC-CM2-VHR4/highres-future/r1i1p1f1/6hrPlevPt/psl/gn/v20190509/psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201503010000-201503311800.nc',
  'https://esgf.ceda.ac.uk/thredds/fileServer/esg_cmip6/CMIP6/HighResMIP/CMCC/CMCC-CM2-VHR4/highres-future/r1i1p1f1/6hrPlevPt/psl/gn/v20190509/psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201504010000-201504301800.nc',
  'https://esgf.ceda.ac.uk/thredds/fileServer/esg_cmip6/CMIP6/HighResMIP/CMCC/CMCC-CM2-VHR4/highres-future/r1i1p1f1/6hrPlevPt/psl/gn/v20190509/psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201505010000-201505311800.nc',
  'https://esgf.ceda.ac.uk/thredds/fileServer/esg_cmip6/CMIP6/HighResMIP/CMCC/CMCC-CM2-VHR4/highres-future/r1i1p1f1/6hrPlevPt/psl/gn/v20190509/psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201506010000-201506301800.nc',
  'https://esgf.ceda.ac.uk/thredds/fileServer/esg_cmip6/CMIP6/HighResMIP/CMCC/CMCC-CM2-VHR4/highres-future/r1i1p1f1/6hrPlevPt/psl/gn/v20190509/psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201507010000-201507311800.nc',
  'https://esgf.ceda.ac.uk/thredds/fileServer/esg_cmip6/CMIP6/HighResMIP/CMCC/CMCC-CM2-VHR4/highres-future/r1i1p1f1/6hrPlevPt/psl/gn/v20190509/psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201508010000-201508311800.nc',
  'https://esgf.ceda.ac.uk/thredds/fileServer/esg_cmip6/CMIP6/HighResMIP/CMCC/CMCC-CM2-VHR4/highres-future/r1i1p1f1/6hrPlevPt/psl/gn/v20190509/psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201509010000-201509301800.nc',
  'https://esgf.ceda.ac.uk/thredds/fileServer/esg_cmip6/CMIP6/HighResMIP/CMCC/CMCC-CM2-VHR4/highres-future/r1i1p1f1/6hrPlevPt/psl/gn/v20190509/psl_6hrPlevPt_CMCC-CM2-VHR4_highres-future_r1i1p1f1_gn_201510010000-201510311800.nc']}

@jbusecke
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I have gone through too many cycles of thinking that I have isolated the core/required attributes to extract from the API response. In my latest approach I am literally taking everything I got back from the ESGF API (for dataset and files), and inject it into the attributes:

ds.attrs['pangeo_forge_api_responses']

gives something like this now:

{'dataset': {'_timestamp': '2019-06-04T19:25:09.014Z', '_version_': 1635439145400664064, 'access': ['HTTPServer', 'GridFTP', 'OPENDAP', 'LAS'], 'activity_drs': ['CMIP'], 'activity_id': ['CMIP'], 'cf_standard_name': ['sea_water_salinity'], 'citation_url': ['http://cera-www.dkrz.de/WDCC/meta/CMIP6/CMIP6.CMIP.CCCma.CanESM5.historical.r12i1p1f1.Omon.so.gn.v20190429.json'], 'data_node': 'crd-esgf-drc.ec.gc.ca', 'data_specs_version': ['01.00.29'], 'dataset_id_template_': ['%(mip_era)s.%(activity_drs)s.%(institution_id)s.%(source_id)s.%(experiment_id)s.%(member_id)s.%(table_id)s.%(variable_id)s.%(grid_label)s'], 'datetime_start': '1850-01-16T12:00:00Z', 'datetime_stop': '2014-12-16T12:00:00Z', 'directory_format_template_': ['%(root)s/%(mip_era)s/%(activity_drs)s/%(institution_id)s/%(source_id)s/%(experiment_id)s/%(member_id)s/%(table_id)s/%(variable_id)s/%(grid_label)s/%(version)s'], 'experiment_id': ['historical'], 'experiment_title': ['all-forcing simulation of the recent past'], 'frequency': ['mon'], 'further_info_url': ['https://furtherinfo.es-doc.org/CMIP6.CCCma.CanESM5.historical.none.r12i1p1f1'], 'grid': ['ORCA1 tripolar grid, 1 deg with refinement to 1/3 deg within 20 degrees of the equator; 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Not exactly subtle, but this will leave me with the biggest flexibility to implement tests based on this additional metadata (#99, which should help identify #53, probably avoid #30?)

@jbusecke jbusecke mentioned this issue May 11, 2024
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@jbusecke jbusecke mentioned this issue May 11, 2024
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