Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Did bwa index use the SA-IS algorithm? #408

Open
MiyaaL opened this issue Nov 30, 2023 · 0 comments
Open

Did bwa index use the SA-IS algorithm? #408

MiyaaL opened this issue Nov 30, 2023 · 0 comments

Comments

@MiyaaL
Copy link

MiyaaL commented Nov 30, 2023

I found that the bwa indexing process took a long time. In addition, I noticed that the SA-IS algorithm is almost the fastest suffix sorting algorithm. Has this algorithm been applied in bwa? Or is there any multi-thread version available now?
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@MiyaaL