From 03df0bd03cb73ee6e8ce1cb6994f145105d532d4 Mon Sep 17 00:00:00 2001
From: linsalrob <raedwards@gmail.com>
Date: Tue, 3 Sep 2024 11:27:40 +0930
Subject: [PATCH] adding workshop schedule

---
 Workshops/COMBINE_QLD_2024.md | 64 ++++++++++++++++++++++++++++++++++
 Workshops/COMBINE_WA_2024.md  | 65 +++++++++++++++++++++++++++++++++++
 2 files changed, 129 insertions(+)
 create mode 100644 Workshops/COMBINE_QLD_2024.md
 create mode 100644 Workshops/COMBINE_WA_2024.md

diff --git a/Workshops/COMBINE_QLD_2024.md b/Workshops/COMBINE_QLD_2024.md
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+# COMBINE Metagenomics Workshop, 2024
+
+University of Queensland, Queensland, Australia, 2024
+
+
+# Workshop Location
+
+Room 3.142 [Institute for Molecular Bioscience](https://imb.uq.edu.au/ ), University of Queensland, St Lucia, QLD.
+
+# Workshop Schedule
+
+## Day 1: Monday September 9<sup>th</sup>
+
+Time | Topic 
+--- | --- 
+0900-0915 | Welcome and Introductions. 
+0915-1000 | Introduction to metagenomics, Linux, and Bash 
+1000-1030 | Bash hands on and practice 
+1030-1100 | Morning coffee
+1100-1200 | Introduction to methods for identifying species GTDB, SingleM 
+1200-1330 | Lunch 
+1330-1400 | Hands-on with SingleM 
+1400-1500 | Introduction to binning 
+1500-1530 | Afternoon tea 
+1530-1600 | Microbial binning 
+1600-1700 | Invited Presentation:  Professor Elizabeth Dinsdale
+
+
+## Day 2: Tuesday September 10<sup>th</sup>
+
+Time | Topic 
+-- | --
+0900-0930 | Recap of Day 1 
+0930-1000 | Introduction to methods for functional analysis 
+1000-1030 | SUPER-FOCUS hands-on 
+1030-1100 | Morning coffee 
+1100-1200 | Viral identification using Hecatomb 
+1200-1230 | Hecatomb hands-on 
+1230-1330 | Lunch 
+1400-1500 | Hands-on data visualisation 
+1500-1530 | Afternoon tea 
+1530-1645 | Hands-on data visualisation 
+1645-1700 | Wrap up and summary 
+
+
+# Download
+
+If you are using a MS Windows machine, please download and install [MobaXterm](https://mobaxterm.mobatek.net/) before we start. If you are using a Mac, you are good to go!
+
+# Metagenomics
+
+We are going to jump right in with metagenomics, but [here is a brief introduction](https://linsalrob.github.io/ComputationalGenomicsManual/Metagenomics/) if you want to read something while Rob is talking.
+
+
+We have created servers for you with all the software and data that you will need for these excercises. 
+
+There are two machines that you can use, if you don't have access to a server:
+
+```
+IP Addresses:
+1: 
+2: 
+```
+
diff --git a/Workshops/COMBINE_WA_2024.md b/Workshops/COMBINE_WA_2024.md
new file mode 100644
index 0000000..157ab62
--- /dev/null
+++ b/Workshops/COMBINE_WA_2024.md
@@ -0,0 +1,65 @@
+# COMBINE Metagenomics Workshop, 2024
+
+University of Queensland, Queensland, Australia, 2024
+
+
+# Workshop Location
+
+TBD
+
+# Workshop Schedule
+
+## Day 1: Monday November 11<sup>th</sup>
+
+Time | Topic 
+--- | --- 
+0900-0915 | Welcome and Introductions. 
+0915-1000 | Introduction to metagenomics, Linux, and Bash 
+1000-1030 | Bash hands on and practice 
+1030-1100 | Morning coffee
+1100-1200 | Introduction to methods for identifying species GTDB, SingleM 
+1200-1330 | Lunch 
+1330-1400 | Hands-on with SingleM 
+1400-1500 | Introduction to binning 
+1500-1530 | Afternoon tea 
+1530-1600 | Microbial binning 
+1600-1700 | Invited Presentation:  Professor Elizabeth Dinsdale
+
+
+## Day 2: Tuesday November 12<sup>th</sup>
+
+Time | Topic 
+-- | --
+0900-0930 | Recap of Day 1 
+0930-1000 | Introduction to methods for functional analysis 
+1000-1030 | SUPER-FOCUS hands-on 
+1030-1100 | Morning coffee 
+1100-1200 | Viral identification using Hecatomb 
+1200-1230 | Hecatomb hands-on 
+1230-1330 | Lunch 
+1400-1500 | Hands-on data visualisation 
+1500-1530 | Afternoon tea 
+1530-1645 | Hands-on data visualisation 
+1645-1700 | Wrap up and summary 
+
+# Download
+
+If you are using a MS Windows machine, please download and install [MobaXterm](https://mobaxterm.mobatek.net/) before we start. If you are using a Mac, you are good to go!
+
+
+
+# Metagenomics
+
+We are going to jump right in with metagenomics, but [here is a brief introduction](https://linsalrob.github.io/ComputationalGenomicsManual/Metagenomics/) if you want to read something while Rob is talking.
+
+
+We have created servers for you with all the software and data that you will need for these excercises. 
+
+There are two machines that you can use, if you don't have access to a server:
+
+```
+IP Addresses:
+1: 
+2: 
+```
+