.dockstore.yml

version: 1.2
workflows:
 - name: viral_refbased_assembly
   subclass: WDL
   primaryDescriptorPath: /workflows/wf_viral_refbased_assembly.wdl
   testParameterFiles:
    - empty.json
 - name: sc2_pubRepo_submission
   subclass: WDL
   primaryDescriptorPath: /workflows/wf_sc2_pubRepo_submission.wdl
   testParameterFiles:
    - empty.json
 - name: clearlabs_viral_refbased_assembly
   subclass: WDL
   primaryDescriptorPath: /workflows/wf_clearlabs_viral_refbased_assembly.wdl
   testParameterFiles:
    - empty.json
 - name: ont_sc2_pubRepo_submission
   subclass: WDL
   primaryDescriptorPath: /workflows/wf_ont_sc2_pubRepo_submission.wdl
   testParameterFiles:
    - empty.json
 - name: genomic_cluster_analysis
   subclass: WDL
   primaryDescriptorPath: /workflows/wf_genomic_cluster_analysis.wdl
   testParameterFiles:
    - empty.json
 - name: sc2_batch_submission
   subclass: WDL
   primaryDescriptorPath: /workflows/wf_sc2_batch_submission.wdl
   testParameterFiles:
    - empty.json
 - name: Titan_ClearLabs
   subclass: WDL
   primaryDescriptorPath: /workflows/wf_titan_clearlabs.wdl
   testParameterFiles:
    - empty.json
 - name: Titan_ONT
   subclass: WDL
   primaryDescriptorPath: /workflows/wf_titan_ont.wdl
   testParameterFiles:
    - empty.json
 - name: Titan_Illumina_PE
   subclass: WDL
   primaryDescriptorPath: /workflows/wf_titan_illumina_pe.wdl
   testParameterFiles:
    - empty.json
 - name: Titan_Illumina_SE
   subclass: WDL
   primaryDescriptorPath: /workflows/wf_titan_illumina_se.wdl
   testParameterFiles:
    - empty.json
 - name: sc2_pubRepo_prep_se
   subclass: WDL
   primaryDescriptorPath: /workflows/wf_sc2_pubRepo_prep_se.wdl
   testParameterFiles:
    - empty.json
 - name: sc2_pubRepo_prep_pe
   subclass: WDL
   primaryDescriptorPath: /workflows/wf_sc2_pubRepo_prep_pe.wdl
   testParameterFiles:
    - empty.json
 - name: Mercury_PE_Prep
   subclass: WDL
   primaryDescriptorPath: /workflows/wf_mercury_pe_prep.wdl
   testParameterFiles:
    - empty.json
 - name: Mercury_SE_Prep
   subclass: WDL
   primaryDescriptorPath: /workflows/wf_mercury_se_prep.wdl
   testParameterFiles:
    - empty.json
 - name: Mercury_Batch
   subclass: WDL
   primaryDescriptorPath: /workflows/wf_mercury_batch.wdl
   testParameterFiles:
    - empty.json
 - name: SC2_nextstrain
   subclass: WDL
   primaryDescriptorPath: /workflows/wf_sarscov2_nextstrain.wdl
   testParameterFiles:
    - empty.json
 - name: Titan_Augur_Prep
   subclass: WDL
   primaryDescriptorPath: /workflows/wf_titan_augur_prep.wdl
   testParameterFiles:
    - empty.json
 - name: Titan_Augur_Run
   subclass: WDL
   primaryDescriptorPath: /workflows/wf_titan_augur_run.wdl
   testParameterFiles:
    - empty.json
 - name: Pangolin_Update
   subclass: WDL
   primaryDescriptorPath: /workflows/wf_pangolin_update.wdl
   testParameterFiles:
    - empty.json
 - name: VADR_Update
   subclass: WDL
   primaryDescriptorPath: /workflows/wf_vadr_update.wdl
   testParameterFiles:
    - empty.json
 - name: NCBI_Scrub_SE
   subclass: WDL
   primaryDescriptorPath: /workflows/wf_ncbi_scrub_se.wdl
   testParameterFiles:
    - empty.json
 - name: NCBI_Scrub_PE
   subclass: WDL
   primaryDescriptorPath: /workflows/wf_ncbi_scrub_pe.wdl
   testParameterFiles:
    - empty.json