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flybase-deduced.metta
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;;;Skipping file: data/ftp.flybase.net/releases/current/precomputed_files/alleles/allele_genetic_interactions_fb_2023_04.pl
;;------------------------------------------------------------------------------------------------------------------
;;; Analyzing file: data/ftp.flybase.net/releases/current/precomputed_files/alleles/allele_genetic_interactions_fb_2023_04.tsv
!(file-name allele_genetic_interactions data/ftp.flybase.net/releases/current/precomputed_files/alleles/allele_genetic_interactions_fb_2023_04.tsv)
(num-columns allele_genetic_interactions 4)
(duplicated-rows allele_genetic_interactions 21)
(total-rows allele_genetic_interactions 363452)
(unique-values allele_genetic_interactions 1 28688 object)
(unique-values allele_genetic_interactions 2 28685 object)
(unique-values allele_genetic_interactions 3 227000 object)
(unique-values allele_genetic_interactions 4 8034 object)
(missing-values allele_genetic_interactions 1 0 () ())
(null-value-count allele_genetic_interactions 2 "" 19)
(missing-values allele_genetic_interactions 2 19 (# "") (# 19))
(null-value-count allele_genetic_interactions 3 "" 19)
(missing-values allele_genetic_interactions 3 19 (# "") (# 19))
(null-value-count allele_genetic_interactions 4 "" 38)
(missing-values allele_genetic_interactions 4 38 (# "") (# 38))
(most-frequent allele_genetic_interactions 1 (# (# "Scer\\GAL4[hs.2sev]" 1793) (# "Scer\\GAL4[elav.PU]" 1893) (# "Scer\\GAL4[Bx-MS1096]" 1990) (# "Scer\\GAL4[ey.PH]" 2227) (# "Scer\\GAL4[elav-C155]" 2526) (# "Scer\\GAL4[GMR.PU]" 9205) (# "Scer\\GAL4[GMR.PF]" 14267)))
(less-frequent allele_genetic_interactions 1 (# (# "Su(mg)2-1[2-1]" 1) (# "dnt[ap.ME4]" 1) (# "Fas2[unspecified]" 1) (# "dock[R336Q.UAS]" 1) (# "dock[W151K.UAS]" 1) (# "dock[W225K.UAS]" 1) (# "dock[W48K.UAS]" 1)))
(most-frequent allele_genetic_interactions 2 (# (# FBal0042580 1793) (# FBal0241645 1893) (# FBal0040476 1990) (# FBal0093300 2227) (# FBal0047071 2526) (# FBal0240667 9205) (# FBal0244011 14267)))
(less-frequent allele_genetic_interactions 2 (# (# FBal0083171 1) (# FBal0094549 1) (# FBal0104139 1) (# FBal0089352 1) (# FBal0089350 1) (# FBal0089348 1) (# FBal0089346 1)))
(most-frequent allele_genetic_interactions 3 (# (# "Scer\\GAL4[Bx-MS1096], mir-286[UAS.cluster.cLc], mir-309[UAS.cluster.cLc], mir-3[UAS.cluster.cLc], mir-4[UAS.cluster.cLc], mir-5[UAS.cluster.cLc], mir-6-1[UAS.cluster.cLc], mir-6-2[UAS.cluster.cLc], mir-6-3[UAS.cluster.cLc] has wing phenotype" 8) (# "Scer\\GAL4[Bx-MS1096], mir-286[UAS.cluster.cLc], mir-309[UAS.cluster.cLc], mir-3[UAS.cluster.cLc], mir-4[UAS.cluster.cLc], mir-5[UAS.cluster.cLc], mir-6-1[UAS.cluster.cLc], mir-6-2[UAS.cluster.cLc], mir-6-3[UAS.cluster.cLc] has lethal phenotype" 8) (# "Delta[UAS.cDa], Scer\\GAL4[ey.PH], lola[GS88A8], psq[GS88A8] has neoplasia phenotype" 9) (# "rho[ve-1], vn[1] has wing vein phenotype" 10) (# "Dp[GMR.PD], E2f1[GMR.PD] has eye phenotype" 10) (# "Delta[UAS.cDa], Scer\\GAL4[ey.PH], lola[GS88A8], psq[GS88A8] has eye phenotype" 18)))
(less-frequent allele_genetic_interactions 3 (# (# "1038[1038] is an enhancer of visible phenotype of vg[83b27]/vg[1]" 1) (# "bas[1] is an enhancer of paralytic phenotype of para[bss1]" 1) (# "baz[4] has abnormal cell polarity phenotype, enhanceable by Dhc64C[6-6]/Dhc64C[6-8]" 1) (# "baz[4] has abnormal neuroanatomy phenotype, non-enhanceable by aPKC[Exc55]" 1) (# "baz[4] has abnormal neuroanatomy phenotype, non-suppressible by aPKC[Exc55]" 1) (# "baz[4] has bouton phenotype, non-enhanceable by aPKC[Exc55]" 1) (# "baz[4] has bouton phenotype, non-suppressible by aPKC[Exc55]" 1)))
(most-frequent allele_genetic_interactions 4 (# (# FBrf0179402 1369) (# FBrf0237532 1506) (# FBrf0147055 1723) (# FBrf0246190 1852) (# FBrf0190765 1868) (# FBrf0199094 1940) (# FBrf0187664 2514)))
(less-frequent allele_genetic_interactions 4 (# (# FBrf0158937 1) (# FBrf0159209 1) (# FBrf0192307 1) (# FBrf0226217 1) (# FBrf0160985 1) (# FBrf0134563 1) (# FBrf0235180 1)))
;;;Skipping file: data/ftp.flybase.net/releases/current/precomputed_files/alleles/fbal_to_fbgn_fb_2023_04.pl
;;------------------------------------------------------------------------------------------------------------------
;;; Analyzing file: data/ftp.flybase.net/releases/current/precomputed_files/alleles/fbal_to_fbgn_fb_2023_04.tsv
!(file-name fbal_to_fbgn data/ftp.flybase.net/releases/current/precomputed_files/alleles/fbal_to_fbgn_fb_2023_04.tsv)
(num-columns fbal_to_fbgn 4)
(duplicated-rows fbal_to_fbgn 0)
(total-rows fbal_to_fbgn 288468)
(unique-values fbal_to_fbgn 1 288468 object)
(unique-values fbal_to_fbgn 2 288454 object)
(unique-values fbal_to_fbgn 3 33136 object)
(unique-values fbal_to_fbgn 4 33136 object)
(missing-values fbal_to_fbgn 1 0 () ())
(missing-values fbal_to_fbgn 2 0 () ())
(null-value-count fbal_to_fbgn 3 "" 58)
(missing-values fbal_to_fbgn 3 58 (# "") (# 58))
(null-value-count fbal_to_fbgn 4 "" 58)
(missing-values fbal_to_fbgn 4 58 (# "") (# 58))
(most-frequent fbal_to_fbgn 2 (# (# "abd-A[HCJ32" 2) (# "Ecol\\lacZ[HCJ32" 2) (# "Ecol\\lacZ[Dora-PL29" 2) (# "abd-A[HC184B-HCJ32" 2) (# "Mhc[" 2) (# "y[2" 3) (# "y[1" 5)))
(less-frequent fbal_to_fbgn 2 (# (# "Xrp1[142]" 1) (# "Apc2[45]" 1) (# "Apc2[5-3]" 1) (# "Apc2[Delta20rep.Tag:HA]" 1) (# "TBC1d7[Apc2-79]" 1) (# "mRpS24[Apc2-79]" 1) (# "mRpS24[+t3.78]" 1)))
(most-frequent fbal_to_fbgn 3 (# (# FBgn0004034 989) (# FBgn0003996 1474) (# FBgn0015250 2466) (# FBgn0262639 3340) (# FBgn0014446 4731) (# FBgn0014447 12710) (# FBgn0014445 30381)))
(less-frequent fbal_to_fbgn 3 (# (# FBgn0267024 1) (# FBgn0044109 1) (# FBgn0018700 1) (# FBgn0014164 1) (# FBgn0003537 1) (# FBgn0002275 1) (# FBgn0001163 1)))
(most-frequent fbal_to_fbgn 4 (# (# y 989) (# w 1474) (# "Ecol\\lexA" 2466) (# "Hsap\\RELA" 3340) (# "Avic\\GFP" 4731) (# "Ecol\\lacZ" 12710) (# "Scer\\GAL4" 30381)))
(less-frequent fbal_to_fbgn 4 (# (# "asRNA:CR45468" 1) (# "E(rst)C383" 1) (# "Dpau\\v" 1) (# fez 1) (# "Stp-1" 1) (# "l(3)70Ac" 1) (# GustR 1)))
;;;Skipping file: data/ftp.flybase.net/releases/current/precomputed_files/alleles/genotype_phenotype_data_fb_2023_04.pl
;;------------------------------------------------------------------------------------------------------------------
;;; Analyzing file: data/ftp.flybase.net/releases/current/precomputed_files/alleles/genotype_phenotype_data_fb_2023_04.tsv
!(file-name genotype_phenotype_data data/ftp.flybase.net/releases/current/precomputed_files/alleles/genotype_phenotype_data_fb_2023_04.tsv)
(num-columns genotype_phenotype_data 7)
(duplicated-rows genotype_phenotype_data 1032)
(total-rows genotype_phenotype_data 384206)
(unique-values genotype_phenotype_data 1 155953 object)
(unique-values genotype_phenotype_data 2 155919 object)
(unique-values genotype_phenotype_data 3 3603 object)
(unique-values genotype_phenotype_data 4 3608 object)
(unique-values genotype_phenotype_data 5 1340 object)
(unique-values genotype_phenotype_data 6 1348 object)
(unique-values genotype_phenotype_data 7 19007 object)
(missing-values genotype_phenotype_data 1 0 () ())
(null-value-count genotype_phenotype_data 2 "" 321)
(missing-values genotype_phenotype_data 2 321 (# "") (# 321))
(null-value-count genotype_phenotype_data 3 "" 321)
(missing-values genotype_phenotype_data 3 321 (# "") (# 321))
(null-value-count genotype_phenotype_data 4 "" 321)
(missing-values genotype_phenotype_data 4 321 (# "") (# 321))
(null-value-count genotype_phenotype_data 5 "" 242201)
(missing-values genotype_phenotype_data 5 242201 (# "") (# 242201))
(null-value-count genotype_phenotype_data 6 "" 242201)
(missing-values genotype_phenotype_data 6 242201 (# "") (# 242201))
(null-value-count genotype_phenotype_data 7 "" 321)
(missing-values genotype_phenotype_data 7 321 (# "") (# 321))
(most-frequent genotype_phenotype_data 1 (# (# "hid[GMR.PG]" 177) (# "numb[1]" 190) (# "wg[l-17]" 198) (# "N[l1N-ts1]" 238) (# "y[1" 242) (# "N[55e11]" 261) (# "Pink1[B9]" 316)))
(less-frequent genotype_phenotype_data 1 (# (# "Scer\\GAL4[elav.PLu] y[GD1564] Dcr-2[UAS.cDa]" 1) (# "Scer\\GAL4[nub-AC-62] Slu7[HMC04054]" 1) (# "Scer\\GAL4[nub-AC-62] Sf3b6[HMS02566]" 1) (# "Scer\\GAL4[nub-AC-62] Sf3b5[HMS00097]" 1) (# "Scer\\GAL4[nub-AC-62] Sf3b1[HMS00055]" 1) (# "Scer\\GAL4[nub-AC-62] Sf3a2[HMC03799]" 1) (# "Scer\\GAL4[nub-AC-62] Sf3a1[HMS00157]" 1)))
(most-frequent genotype_phenotype_data 2 (# (# FBal0265023 177) (# FBal0013186 190) (# FBal0018509 198) (# FBal0012887 238) (# FBal0012701 261) (# FBal0193144 316)))
(less-frequent genotype_phenotype_data 2 (# (# FBal0244778 1) (# "FBal0058766 FBal0150204" 1) (# "FBal0058766 FBal0150205" 1) (# "FBal0147425 FBal0241645 FBal0299692" 1) (# "FBal0058766 FBal0215661" 1) (# "FBal0147425 FBal0241645 FBal0290792" 1) (# "FBal0058766 FBal0277700" 1)))
(most-frequent genotype_phenotype_data 3 (# (# "lethal - all die during embryonic stage" 5395) (# eye 8272) (# "abnormal neuroanatomy" 9153) (# wing 10701) (# visible 24435) (# lethal 35360) (# viable 47447)))
(less-frequent genotype_phenotype_data 3 (# (# "rough endoplasmic reticulum membrane" 1) (# "muscle cell of basalar muscle 49" 1) (# "gonadal sheath" 1) (# "visceral muscle cell" 1) (# "A1-7 ventral acute muscle cell" 1) (# "pupal s-LNv neuron" 1) (# "larval s-LNv neuron" 1)))
(most-frequent genotype_phenotype_data 4 (# (# FBcv0002033 5395) (# FBbt00004508 8272) (# FBcv0000435 9153) (# FBbt00004729 10701) (# FBcv0000354 24435) (# FBcv0000351 35360) (# FBcv0000349 47447)))
(less-frequent genotype_phenotype_data 4 (# (# FBbt00001314 1) (# FBbt00110023 1) (# FBbt00110022 1) (# FBbt00002511 1) (# FBbt00067044 1) (# FBbt00067062 1) (# FBbt00017021 1)))
(most-frequent genotype_phenotype_data 5 (# (# "embryonic stage" 4459) (# "somatic clone" 8931) (# "larval stage" 9821) (# "third instar larval stage" 9888) (# "adult stage" 16290) (# recessive 40476)))
(less-frequent genotype_phenotype_data 5 (# (# "germline clone|embryonic stage 13" 1) (# "somatic clone - tissue specific|decreased number" 1) (# "oogenesis|decreased number|germline clone" 1) (# "germline clone|decreased number" 1) (# "recessive|first instar larval stage|maternal effect" 1) (# "maternal effect|second instar larval stage|recessive" 1) (# "larval stage|somatic clone|cell autonomous|decreased number" 1)))
(most-frequent genotype_phenotype_data 6 (# (# FBdv00005289 4459) (# FBcv0000336 8931) (# FBdv00005336 9821) (# FBdv00005339 9888) (# FBdv00005369 16290) (# FBcv0000298 40476)))
(less-frequent genotype_phenotype_data 6 (# (# FBcv0000732 1) (# "FBcv0000333|FBdv00005369|FBcv0000793" 1) (# "FBcv0000153|FBcv0000068" 1) (# "FBcv0000058|FBcv0000061" 1) (# "FBcv0000336|FBdv00005339|FBcv0000061" 1) (# "FBcv0007050|FBdv00007001|FBcv0000068" 1) (# "FBcv0007048|FBdv00005338" 1)))
(most-frequent genotype_phenotype_data 7 (# (# FBrf0132177 2452) (# FBrf0179797 2682) (# FBrf0210524 7345) (# FBrf0212295 11407) (# FBrf0210226 11838) (# unattributed 15059) (# FBrf0214518 19955)))
(less-frequent genotype_phenotype_data 7 (# (# FBrf0189827 1) (# FBrf0179942 1) (# FBrf0206908 1) (# FBrf0183397 1) (# FBrf0023153 1) (# FBrf0221688 1) (# FBrf0237982 1)))
;;;Skipping file: data/ftp.flybase.net/releases/current/precomputed_files/clones/cDNA_clone_data_fb_2023_04.pl
;;------------------------------------------------------------------------------------------------------------------
;;; Analyzing file: data/ftp.flybase.net/releases/current/precomputed_files/clones/cDNA_clone_data_fb_2023_04.tsv
!(file-name cDNA_clone_data data/ftp.flybase.net/releases/current/precomputed_files/clones/cDNA_clone_data_fb_2023_04.tsv)
(num-columns cDNA_clone_data 6)
(duplicated-rows cDNA_clone_data 0)
(total-rows cDNA_clone_data 722570)
(unique-values cDNA_clone_data 1 722570 object)
(unique-values cDNA_clone_data 2 4 object)
(unique-values cDNA_clone_data 3 722570 object)
(unique-values cDNA_clone_data 4 50 object)
(unique-values cDNA_clone_data 5 22711 object)
(unique-values cDNA_clone_data 6 696400 object)
(missing-values cDNA_clone_data 1 0 () ())
(missing-values cDNA_clone_data 2 0 () ())
(null-value-count cDNA_clone_data 3 "unknown" 1)
(missing-values cDNA_clone_data 3 1 (# unknown) (# 1))
(null-value-count cDNA_clone_data 4 "" 354)
(missing-values cDNA_clone_data 4 354 (# "") (# 354))
(null-value-count cDNA_clone_data 5 "" 696444)
(missing-values cDNA_clone_data 5 696444 (# "") (# 696444))
(null-value-count cDNA_clone_data 6 "" 26168)
(missing-values cDNA_clone_data 6 26168 (# "") (# 26168))
(most-frequent cDNA_clone_data 2 (# (# Dsim 239) (# Dyak 426) (# Dpse 13648) (# Dmel 708257)))
(less-frequent cDNA_clone_data 2 (# (# Dsim 239) (# Dyak 426) (# Dpse 13648) (# Dmel 708257)))
(most-frequent cDNA_clone_data 4 (# (# "SD_cDNA" 18885) (# "GH_cDNA" 20768) (# "AT_cDNA" 22564) (# "RH_cDNA" 52475) (# "RE_cDNA" 58036) (# "EK_EP_cDNA" 161904) (# "RP_cDNA" 220083)))
(less-frequent cDNA_clone_data 4 (# (# "TB_cDNA" 3) (# "TA_cDNA" 36) (# "DE-ORESTES_cDNA" 61) (# "CB_cDNA" 61) (# "AM_cDNA" 84) (# "ST_cDNA" 85) (# "RT_pCR8_cDNA" 156)))
(most-frequent cDNA_clone_data 5 (# (# AY069671 2) (# AY051957 2) (# AY061414 2) (# AY069707 2) (# AY051914 2) (# AY231748 3)))
(less-frequent cDNA_clone_data 5 (# (# BT150453 1) (# BT050556 1) (# BT010219 1) (# BT125004 1) (# BT006005 1) (# BT099857 1) (# BT100119 1)))
(most-frequent cDNA_clone_data 6 (# (# GH897620 1) (# GH934971 1) (# CA807794 1) (# AI256966 2) (# BI636404 2) (# BI633401 2)))
(less-frequent cDNA_clone_data 6 (# (# CA807794 1) (# GH872553 1) (# GH881842 1) (# GH911192 1) (# GH817175 1) (# GH899993 1) (# GH918491 1)))
;;;Skipping file: data/ftp.flybase.net/releases/current/precomputed_files/clones/genomic_clone_data_fb_2023_04.pl
;;------------------------------------------------------------------------------------------------------------------
;;; Analyzing file: data/ftp.flybase.net/releases/current/precomputed_files/clones/genomic_clone_data_fb_2023_04.tsv
!(file-name genomic_clone_data data/ftp.flybase.net/releases/current/precomputed_files/clones/genomic_clone_data_fb_2023_04.tsv)
(num-columns genomic_clone_data 4)
(duplicated-rows genomic_clone_data 0)
(total-rows genomic_clone_data 50400)
(unique-values genomic_clone_data 1 50400 object)
(unique-values genomic_clone_data 2 1 object)
(unique-values genomic_clone_data 3 50400 object)
(unique-values genomic_clone_data 4 970 object)
(missing-values genomic_clone_data 1 0 () ())
(missing-values genomic_clone_data 2 0 () ())
(missing-values genomic_clone_data 3 0 () ())
(null-value-count genomic_clone_data 4 "" 49428)
(missing-values genomic_clone_data 4 49428 (# "") (# 49428))
(most-frequent genomic_clone_data 2 (# (# Dmel 50400)))
(less-frequent genomic_clone_data 2 (# (# Dmel 50400)))
(most-frequent genomic_clone_data 4 (# (# AC104703 1) (# AC010031 1) (# AC069405 1) (# AC011662 2) (# AC098575 2) (# AC009888 2)))
(less-frequent genomic_clone_data 4 (# (# AC105774 1) (# AC091226 1) (# AC069405 1) (# AC154046 1) (# AC010031 1) (# AC104703 1) (# AC010573 1)))
;;;Skipping file: data/ftp.flybase.net/releases/current/precomputed_files/collaborators/fbgn_uniprot_fb_2023_04.pl
;;------------------------------------------------------------------------------------------------------------------
;;; Analyzing file: data/ftp.flybase.net/releases/current/precomputed_files/collaborators/fbgn_uniprot_fb_2023_04.tsv
!(file-name fbgn_uniprot data/ftp.flybase.net/releases/current/precomputed_files/collaborators/fbgn_uniprot_fb_2023_04.tsv)
(num-columns fbgn_uniprot 4)
(duplicated-rows fbgn_uniprot 0)
(total-rows fbgn_uniprot 32529)
(unique-values fbgn_uniprot 1 17130 object)
(unique-values fbgn_uniprot 2 17130 object)
(unique-values fbgn_uniprot 3 13964 object)
(unique-values fbgn_uniprot 4 32341 object)
(missing-values fbgn_uniprot 1 0 () ())
(missing-values fbgn_uniprot 2 0 () ())
(null-value-count fbgn_uniprot 3 "" 4918)
(missing-values fbgn_uniprot 3 4918 (# "") (# 4918))
(missing-values fbgn_uniprot 4 0 () ())
(most-frequent fbgn_uniprot 1 (# (# FBgn0265045 40) (# FBgn0013885 49) (# FBgn0002022 50) (# FBgn0285944 56) (# FBgn0033159 79) (# FBgn0082496 101) (# FBgn0003731 267)))
(less-frequent fbgn_uniprot 1 (# (# FBgn0000008 1) (# FBgn0040211 1) (# FBgn0040235 1) (# FBgn0040239 1) (# FBgn0040250 1) (# FBgn0040251 1) (# FBgn0040252 1)))
(most-frequent fbgn_uniprot 2 (# (# "Strn-Mlck" 40) (# "Dsub\\Acph-1" 49) (# Catsup 50) (# para 56) (# Dscam1 79) (# "Dpmo\\bi" 101) (# Egfr 267)))
(less-frequent fbgn_uniprot 2 (# (# a 1) (# hgo 1) (# "c12.1" 1) (# bc10 1) (# Ugt304A1 1) (# Ugt302K1 1) (# Ugt303A1 1)))
(most-frequent fbgn_uniprot 3 (# (# CG33950 32) (# CG44162 40) (# CG10449 50) (# CG9907 56) (# CG17800 79) (# CG10079 267)))
(less-frequent fbgn_uniprot 3 (# (# CG6741 1) (# CG9913 1) (# CG3172 1) (# CG14356 1) (# CG14355 1) (# CG9722 1) (# CG9649 1)))
(most-frequent fbgn_uniprot 4 (# (# Q7KV12 5) (# Q5F4J7 6) (# P02255 18) (# P84051 18) (# P02299 24) (# P02283 24) (# P84040 24)))
(less-frequent fbgn_uniprot 4 (# (# A0A0B4LG21 1) (# Q9GST6 1) (# Q9GST1 1) (# Q9GN59 1) (# Q9GNH0 1) (# Q9GPD9 1) (# Q9GNH4 1)))
;;------------------------------------------------------------------------------------------------------------------
;;; Analyzing file: data/ftp.flybase.net/releases/current/precomputed_files/collaborators/gp_information.fb
!(file-name gp_informatio data/ftp.flybase.net/releases/current/precomputed_files/collaborators/gp_information.fb)
(num-columns gp_informatio 2)
(duplicated-rows gp_informatio 8413)
(total-rows gp_informatio 11695)
(unique-values gp_informatio 1 1885 object)
(unique-values gp_informatio 2 1851 object)
(missing-values gp_informatio 1 0 () ())
(missing-values gp_informatio 2 0 () ())
(most-frequent gp_informatio 1 (# (# at 24) (# kinase 35) (# factor 47) (# of 60) (# P450 82) (# receptor 203) (# protein 334)))
(less-frequent gp_informatio 1 (# (# "07/24/2023" 1) (# "receptor\tCG30106\tprotein\ttaxon:7227\t\tUniProtKB:A1ZAX0\t" 1) (# "1b\tCG6446\tprotein\ttaxon:7227\t\tUniProtKB:O44253|UniProtKB:Q7KK54\t" 1) (# "55B\tCG5765\tprotein\ttaxon:7227\t\tUniProtKB:Q8SXS5|UniProtKB:A1ZB24\t" 1) (# "K[+]" 1) (# shock 1) (# MCU 1)))
(most-frequent gp_informatio 2 (# (# "1\tCG17725\tprotein\ttaxon:7227\t\tUniProtKB:P20007\t" 1) (# "6\tCG15068\tprotein\ttaxon:7227\t\tUniProtKB:A1ZB64\t" 1) (# "2\tCG15067\tprotein\ttaxon:7227\t\tUniProtKB:Q8SYA7|UniProtKB:A1ZB61\t" 1) (# "1\tCG15066\tprotein\ttaxon:7227\t\tUniProtKB:Q9V8F5\t" 1) (# "regulator\tCG17680\tprotein\ttaxon:7227\t\tUniProtKB:Q7JX57\t" 1) (# "channel\tCG5076\tprotein\ttaxon:7227\t\tUniProtKB:Q23974|UniProtKB:A1ZB14|UniProtKB:A0A0B4LGW2\t" 1) (# "$" 1)))
(less-frequent gp_informatio 2 (# (# "$" 1) (# "1\tCG15066\tprotein\ttaxon:7227\t\tUniProtKB:Q9V8F5\t" 1) (# "2\tCG15067\tprotein\ttaxon:7227\t\tUniProtKB:Q8SYA7|UniProtKB:A1ZB61\t" 1) (# "6\tCG15068\tprotein\ttaxon:7227\t\tUniProtKB:A1ZB64\t" 1) (# "1\tCG17725\tprotein\ttaxon:7227\t\tUniProtKB:P20007\t" 1) (# "2\tCG10924\tprotein\ttaxon:7227\t\tUniProtKB:Q7JXB5|UniProtKB:A8DYI3\t" 1) (# "1\tCG5170\tprotein\ttaxon:7227\t\tUniProtKB:Q7KN84|UniProtKB:Q95T04|UniProtKB:Q9U982|UniProtKB:Q7KN75\t" 1)))
;;;Skipping file: data/ftp.flybase.net/releases/current/precomputed_files/collaborators/pmid_fbgn_uniprot_fb_2023_04.pl
;;------------------------------------------------------------------------------------------------------------------
;;; Analyzing file: data/ftp.flybase.net/releases/current/precomputed_files/collaborators/pmid_fbgn_uniprot_fb_2023_04.tsv
!(file-name pmid_fbgn_uniprot data/ftp.flybase.net/releases/current/precomputed_files/collaborators/pmid_fbgn_uniprot_fb_2023_04.tsv)
(num-columns pmid_fbgn_uniprot 5)
(duplicated-rows pmid_fbgn_uniprot 0)
(total-rows pmid_fbgn_uniprot 2262948)
(unique-values pmid_fbgn_uniprot 1 57873 object)
(unique-values pmid_fbgn_uniprot 2 57872 int64)
(unique-values pmid_fbgn_uniprot 3 146121 object)
(unique-values pmid_fbgn_uniprot 4 2 object)
(unique-values pmid_fbgn_uniprot 5 184918 object)
(missing-values pmid_fbgn_uniprot 1 0 () ())
(missing-values pmid_fbgn_uniprot 2 0 () ())
(missing-values pmid_fbgn_uniprot 3 0 () ())
(missing-values pmid_fbgn_uniprot 4 0 () ())
(missing-values pmid_fbgn_uniprot 5 0 () ())
(most-frequent pmid_fbgn_uniprot 1 (# (# FBrf0244508 11253) (# FBrf0229340 12087) (# FBrf0210524 14897) (# FBrf0212295 20997) (# FBrf0210226 21057) (# FBrf0219727 27601) (# FBrf0200326 154679)))
(less-frequent pmid_fbgn_uniprot 1 (# (# FBrf0207593 1) (# FBrf0073396 1) (# FBrf0216372 1) (# FBrf0050713 1) (# FBrf0215265 1) (# FBrf0228014 1) (# FBrf0084265 1)))
(most-frequent pmid_fbgn_uniprot 2 (# (# 31722958 11253) (# 25312911 12087) (# 20371351 14897) (# 21074052 20997) (# 20220848 21057) (# 23071443 27601) (# 17994087 154679)))
(less-frequent pmid_fbgn_uniprot 2 (# (# 19226322 1) (# 21035367 1) (# 3938362 1) (# 7641726 1) (# 31992709 1) (# 2504633 1) (# 7924995 1)))
(most-frequent pmid_fbgn_uniprot 3 (# (# FBgn0003371 11920) (# FBgn0001624 12980) (# FBgn0264255 17080) (# FBgn0004647 18088) (# FBgn0033159 22357) (# FBgn0285944 22904) (# FBgn0003731 395427)))
(less-frequent pmid_fbgn_uniprot 3 (# (# FBgn0182483 1) (# FBgn0152605 1) (# FBgn0102225 1) (# FBgn0191710 1) (# FBgn0186768 1) (# FBgn0138504 1) (# FBgn0147962 1)))
(most-frequent pmid_fbgn_uniprot 4 (# (# "UniProt/Swiss-Prot" 394838) (# "UniProt/TrEMBL" 1868110)))
(less-frequent pmid_fbgn_uniprot 4 (# (# "UniProt/Swiss-Prot" 394838) (# "UniProt/TrEMBL" 1868110)))
(most-frequent pmid_fbgn_uniprot 5 (# (# Q7YSQ1 2584) (# Q7Z1J1 2584) (# Q7YSR5 2584) (# Q7YSU6 2584) (# M9NE67 2584) (# P10090 3804) (# P09615 4838)))
(less-frequent pmid_fbgn_uniprot 5 (# (# B4QI97 1) (# B4IFF0 1) (# B3MJC2 1) (# B4NVB3 1) (# A0A0Q9WJA5 1) (# B4H241 1) (# B3NEU8 1)))
;;;Skipping file: data/ftp.flybase.net/releases/current/precomputed_files/genes/automated_gene_summaries.pl
;;------------------------------------------------------------------------------------------------------------------
;;; Analyzing file: data/ftp.flybase.net/releases/current/precomputed_files/genes/automated_gene_summaries.tsv
!(file-name automated_gene_summaries data/ftp.flybase.net/releases/current/precomputed_files/genes/automated_gene_summaries.tsv)
(num-columns automated_gene_summaries 2)
(duplicated-rows automated_gene_summaries 0)
(total-rows automated_gene_summaries 237237)
(unique-values automated_gene_summaries 1 237237 object)
(unique-values automated_gene_summaries 2 237237 object)
(missing-values automated_gene_summaries 1 0 () ())
(missing-values automated_gene_summaries 2 0 () ())
;;;Skipping file: data/ftp.flybase.net/releases/current/precomputed_files/genes/automated_gene_summaries_fb_2023_04.pl
;;------------------------------------------------------------------------------------------------------------------
;;; Analyzing file: data/ftp.flybase.net/releases/current/precomputed_files/genes/automated_gene_summaries_fb_2023_04.tsv
!(file-name automated_gene_summaries data/ftp.flybase.net/releases/current/precomputed_files/genes/automated_gene_summaries_fb_2023_04.tsv)
(num-columns automated_gene_summaries 2)
(duplicated-rows automated_gene_summaries 0)
(total-rows automated_gene_summaries 237237)
(unique-values automated_gene_summaries 1 237237 object)
(unique-values automated_gene_summaries 2 237237 object)
(missing-values automated_gene_summaries 1 0 () ())
(missing-values automated_gene_summaries 2 0 () ())
;;;Skipping file: data/ftp.flybase.net/releases/current/precomputed_files/genes/best_gene_summary_fb_2023_04.pl
;;------------------------------------------------------------------------------------------------------------------
;;; Analyzing file: data/ftp.flybase.net/releases/current/precomputed_files/genes/best_gene_summary_fb_2023_04.tsv
!(file-name best_gene_summary data/ftp.flybase.net/releases/current/precomputed_files/genes/best_gene_summary_fb_2023_04.tsv)
(num-columns best_gene_summary 4)
(duplicated-rows best_gene_summary 0)
(total-rows best_gene_summary 32142)
(unique-values best_gene_summary 1 32142 object)
(unique-values best_gene_summary 2 32142 object)
(unique-values best_gene_summary 3 5 object)
(unique-values best_gene_summary 4 29750 object)
(missing-values best_gene_summary 1 0 () ())
(missing-values best_gene_summary 2 0 () ())
(missing-values best_gene_summary 3 0 () ())
(null-value-count best_gene_summary 4 "" 21)
(missing-values best_gene_summary 4 21 (# "") (# 21))
(most-frequent best_gene_summary 3 (# (# "Interactive Fly" 64) (# UniProtKB 1737) (# "FlyBase Gene Snapshot" 3655) (# Alliance 8284) (# "FlyBase Auto Summary" 18402)))
(less-frequent best_gene_summary 3 (# (# "Interactive Fly" 64) (# UniProtKB 1737) (# "FlyBase Gene Snapshot" 3655) (# Alliance 8284) (# "FlyBase Auto Summary" 18402)))
(most-frequent best_gene_summary 4 (# (# "Predicted to enable chitin binding activity. Predicted to be located in extracellular region." 48) (# "Predicted to enable serine-type endopeptidase activity. Predicted to be involved in proteolysis." 56) (# "Is expressed in spermatozoon." 63) (# "Predicted to be involved in RNA processing. Predicted to be located in nucleolus." 72) (# "Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in cytosolic ribosome." 96) (# "Is expressed in organism." 107) (# "Is expressed in adult head." 114)))
(less-frequent best_gene_summary 4 (# (# "The gene lethal (1) 291-68 is referred to in FlyBase by the symbol Dmel\\l(1)291-68 (FBgn0011177). It is a gene from Dmel. Gene has not been localized to the genome sequence. Its molecular function is unknown. The biological processes in which it is involved are not known. One allele is reported. No phenotypic data is available. The phenotypic class of allele includes: lethal." 1) (# "The gene E(csw)3B is referred to in FlyBase by the symbol Dmel\\E(csw)3B (FBgn0041256). It is a gene from Dmel. Gene has not been localized to the genome sequence. Its molecular function is described by: . The biological processes in which it is involved are not known. No alleles are reported." 1) (# "The gene E3 is referred to in FlyBase by the symbol Dmel\\E3 (FBgn0041255). It is a gene from Dmel. Gene has not been localized to the genome sequence. Its molecular function is unknown. The biological processes in which it is involved are not known. No alleles are reported." 1) (# "The gene H23-14 is referred to in FlyBase by the symbol Dmel\\H23-14 (FBgn0041211). It is a gene from Dmel. Gene has not been localized to the genome sequence. Its molecular function is unknown. The biological processes in which it is involved are not known. One allele is reported. No phenotypic data is available. The phenotypic class of allele includes: auxotroph." 1) (# "The gene Lipocalin is referred to in FlyBase by the symbol Dmel\\Lipocalin (FBgn0041202). It is a gene from Dmel. Gene has not been localized to the genome sequence. Its molecular function is unknown. The biological processes in which it is involved are not known. No alleles are reported." 1) (# "The gene prolyl-4-hydroxylase-a related protein is referred to in FlyBase by the symbol Dmel\\PH4\u03b1-RP (FBgn0041197). It is a gene from Dmel. Gene has not been localized to the genome sequence. Its molecular function is unknown. The biological processes in which it is involved are not known. No alleles are reported." 1) (# "The gene SSP6107 is referred to in FlyBase by the symbol Dmel\\SSP6107 (FBgn0041189). It is a gene from Dmel. Gene has not been localized to the genome sequence. Its molecular function is unknown. The biological processes in which it is involved are not known. No alleles are reported." 1)))
;;;Skipping file: data/ftp.flybase.net/releases/current/precomputed_files/genes/Dmel_enzyme_data_fb_2023_04.pl
;;------------------------------------------------------------------------------------------------------------------
;;; Analyzing file: data/ftp.flybase.net/releases/current/precomputed_files/genes/Dmel_enzyme_data_fb_2023_04.tsv
!(file-name Dmel_enzyme_data data/ftp.flybase.net/releases/current/precomputed_files/genes/Dmel_enzyme_data_fb_2023_04.tsv)
(num-columns Dmel_enzyme_data 11)
(duplicated-rows Dmel_enzyme_data 0)
(total-rows Dmel_enzyme_data 3969)
(unique-values Dmel_enzyme_data 1 572 object)
(unique-values Dmel_enzyme_data 2 572 object)
(unique-values Dmel_enzyme_data 3 441 object)
(unique-values Dmel_enzyme_data 4 441 object)
(unique-values Dmel_enzyme_data 5 281 object)
(unique-values Dmel_enzyme_data 6 182 object)
(unique-values Dmel_enzyme_data 7 3736 object)
(unique-values Dmel_enzyme_data 8 3736 object)
(unique-values Dmel_enzyme_data 9 2454 object)
(unique-values Dmel_enzyme_data 10 860 object)
(unique-values Dmel_enzyme_data 11 860 object)
(missing-values Dmel_enzyme_data 1 0 () ())
(missing-values Dmel_enzyme_data 2 0 () ())
(missing-values Dmel_enzyme_data 3 0 () ())
(missing-values Dmel_enzyme_data 4 0 () ())
(null-value-count Dmel_enzyme_data 5 "" 1642)
(missing-values Dmel_enzyme_data 5 1642 (# "") (# 1642))
(null-value-count Dmel_enzyme_data 6 "" 2724)
(missing-values Dmel_enzyme_data 6 2724 (# "") (# 2724))
(missing-values Dmel_enzyme_data 7 0 () ())
(missing-values Dmel_enzyme_data 8 0 () ())
(null-value-count Dmel_enzyme_data 9 "" 1328)
(missing-values Dmel_enzyme_data 9 1328 (# "") (# 1328))
(null-value-count Dmel_enzyme_data 10 "" 1609)
(missing-values Dmel_enzyme_data 10 1609 (# "") (# 1609))
(null-value-count Dmel_enzyme_data 11 "" 1609)
(missing-values Dmel_enzyme_data 11 1609 (# "") (# 1609))
(most-frequent Dmel_enzyme_data 1 (# (# FBgg0001478 36) (# FBgg0001695 36) (# FBgg0001207 45) (# FBgg0001618 51) (# FBgg0001079 61) (# FBgg0000128 98) (# FBgg0001078 114)))
(less-frequent Dmel_enzyme_data 1 (# (# FBgg0001510 1) (# FBgg0001617 1) (# FBgg0001419 1) (# FBgg0001420 1) (# FBgg0001622 1) (# FBgg0001246 1) (# FBgg0000869 1)))
(most-frequent Dmel_enzyme_data 2 (# (# "UNCLASSIFIED RNA ENDONUCLEASES" 36) (# "CYTOCHROME P450 - CYP3 CLAN" 36) (# "UNCLASSIFIED NON-AMINOACYL ACYLTRANSFERASES" 45) (# "ECDYSTEROID KINASE-LIKE" 51) (# "S1A SERINE PROTEASES - CHYMOTRYPSIN-LIKE" 61) (# "UNCLASSIFIED RING DOMAIN UBIQUITIN LIGASES" 98) (# "S1A SERINE PROTEASES - TRYPSIN-LIKE" 114)))
(less-frequent Dmel_enzyme_data 2 (# (# TRANSGLUTAMINASES 1) (# "BETA-ALANYL-DOPAMINE/HISTAMINE HYDROLASES" 1) (# "SITE 2 PEPTIDASES" 1) (# "M76 METALLOENDOPEPTIDASES" 1) (# "EYA FAMILY PROTEIN TYROSINE PHOSPHATASES" 1) (# DEOXYCYTIDYLTRANSFERASES 1) (# "OXO-ACID-LYASES" 1)))
(most-frequent Dmel_enzyme_data 3 (# (# "GO:0004806" 55) (# "GO:0003724" 59) (# "GO:0004674" 90) (# "GO:0004497" 93) (# "GO:0003924" 146) (# "GO:0061630" 150) (# "GO:0004252" 205)))
(less-frequent Dmel_enzyme_data 3 (# (# "GO:0071566" 1) (# "GO:0003810" 1) (# "GO:0003923" 1) (# "GO:0016642" 1) (# "GO:0061863" 1) (# "GO:0008970" 1) (# "GO:0016872" 1)))
(most-frequent Dmel_enzyme_data 4 (# (# "triglyceride lipase activity" 55) (# "RNA helicase activity" 59) (# "protein serine/threonine kinase activity" 90) (# "monooxygenase activity" 93) (# "GTPase activity" 146) (# "ubiquitin protein ligase activity" 150) (# "serine-type endopeptidase activity" 205)))
(less-frequent Dmel_enzyme_data 4 (# (# "UFM1 activating enzyme activity" 1) (# "protein-glutamine gamma-glutamyltransferase activity" 1) (# "GPI-anchor transamidase activity" 1) (# "oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor" 1) (# "microtubule plus end polymerase" 1) (# "phospholipase A1 activity" 1) (# "intramolecular lyase activity" 1)))
(most-frequent Dmel_enzyme_data 5 (# (# "3.1.3.16" 47) (# "3.4.24.-" 47) (# "3.1.1.3" 55) (# "3.6.4.13" 59) (# "2.7.11.1" 90) (# "3.4.21.-" 209)))
(less-frequent Dmel_enzyme_data 5 (# (# "1.16.1.-" 1) (# "3.4.19.5" 1) (# "3.2.1.130" 1) (# "3.5.1.89" 1) (# "4.3.1.-|4.3.-.-" 1) (# "7.2.2.9" 1) (# "4.1.99.22" 1)))
(most-frequent Dmel_enzyme_data 6 (# (# "ubiquitinyl hydrolase 1" 36) (# "glutathione transferase" 38) (# "protein-serine/threonine phosphatase" 47) (# "triacylglycerol lipase" 55) (# "RNA helicase" 59) (# "non-specific serine/threonine protein kinase" 90)))
(less-frequent Dmel_enzyme_data 6 (# (# "ribonuclease T2" 1) (# "tripeptidyl-peptidase I|tripeptidyl-peptidase II" 1) (# "phospholipase A1" 1) (# "deoxyribonuclease II" 1) (# "N-acetylglucosamine-6-phosphate deacetylase" 1) (# "molybdopterin molybdotransferase" 1) (# "protoporphyrin ferrochelatase" 1)))
(most-frequent Dmel_enzyme_data 7 (# (# FBgn0028916 3) (# FBgn0002905 3) (# FBgn0030731 3) (# FBgn0011768 3) (# FBgn0034246 3) (# FBgn0263831 4) (# FBgn0010355 4)))
(less-frequent Dmel_enzyme_data 7 (# (# FBgn0025186 1) (# FBgn0043576 1) (# FBgn0043577 1) (# FBgn0043578 1) (# FBgn0029689 1) (# FBgn0037759 1) (# FBgn0027538 1)))
(most-frequent Dmel_enzyme_data 8 (# (# CG33090 3) (# PolQ 3) (# Mfe2 3) (# Fdh 3) (# "Dcr-2" 3) (# Gen 4) (# Taf1 4)))
(less-frequent Dmel_enzyme_data 8 (# (# "ari-2" 1) (# "PGRP-SC1a" 1) (# "PGRP-SB2" 1) (# "PGRP-SB1" 1) (# CG6428 1) (# CG8526 1) (# beta4GalNAcTA 1)))
(most-frequent Dmel_enzyme_data 9 (# (# rudimentary 3) (# "Trehalose-6-phosphate synthase 1" 3) (# "peroxisomal Multifunctional enzyme type 2" 3) (# sepia 3) (# "XPG-like endonuclease" 4) (# "TBP-associated factor 1" 4)))
(less-frequent Dmel_enzyme_data 9 (# (# "ariadne 2" 1) (# "Cardiolipin synthase" 1) (# "Sphingomyelin synthase related" 1) (# "Phosphatidylserine synthase" 1) (# "Pyruvate kinase" 1) (# "easily shocked" 1) (# fumble 1)))
(most-frequent Dmel_enzyme_data 10 (# (# "5.2.1.8" 33) (# "3.4.19.12" 36) (# "3.1.3.16" 38) (# "3.1.1.3" 51) (# "3.6.4.13" 54) (# "2.7.11.1" 104)))
(less-frequent Dmel_enzyme_data 10 (# (# "2.5.1.16" 1) (# "2.1.1.62" 1) (# "2.1.1.56" 1) (# "2.1.1.386" 1) (# "2.3.3.10" 1) (# "2.3.3.8" 1) (# "2.3.1.168" 1)))
(most-frequent Dmel_enzyme_data 11 (# (# "peptidylprolyl isomerase" 33) (# "ubiquitinyl hydrolase 1" 36) (# "protein-serine/threonine phosphatase" 38) (# "triacylglycerol lipase" 51) (# "RNA helicase" 54) (# "non-specific serine/threonine protein kinase" 104)))
(less-frequent Dmel_enzyme_data 11 (# (# "spermidine synthase" 1) (# "mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase" 1) (# "mRNA (guanine-N(7))-methyltransferase" 1) (# "small RNA 2'-O-methyltransferase" 1) (# "hydroxymethylglutaryl-CoA synthase" 1) (# "ATP citrate synthase" 1) (# "dihydrolipoyllysine-residue (2-methylpropanoyl)transferase" 1)))
;;;Skipping file: data/ftp.flybase.net/releases/current/precomputed_files/genes/dmel_gene_sequence_ontology_annotations_fb_2023_04.pl
;;------------------------------------------------------------------------------------------------------------------
;;; Analyzing file: data/ftp.flybase.net/releases/current/precomputed_files/genes/dmel_gene_sequence_ontology_annotations_fb_2023_04.tsv
!(file-name dmel_gene_sequence_ontology_annotations data/ftp.flybase.net/releases/current/precomputed_files/genes/dmel_gene_sequence_ontology_annotations_fb_2023_04.tsv)
(num-columns dmel_gene_sequence_ontology_annotations 4)
(duplicated-rows dmel_gene_sequence_ontology_annotations 0)
(total-rows dmel_gene_sequence_ontology_annotations 38590)
(unique-values dmel_gene_sequence_ontology_annotations 1 17902 object)
(unique-values dmel_gene_sequence_ontology_annotations 2 17902 object)
(unique-values dmel_gene_sequence_ontology_annotations 3 44 object)
(unique-values dmel_gene_sequence_ontology_annotations 4 44 object)
(missing-values dmel_gene_sequence_ontology_annotations 1 0 () ())
(missing-values dmel_gene_sequence_ontology_annotations 2 0 () ())
(missing-values dmel_gene_sequence_ontology_annotations 3 0 () ())
(missing-values dmel_gene_sequence_ontology_annotations 4 0 () ())
(most-frequent dmel_gene_sequence_ontology_annotations 1 (# (# FBgn0263102 5) (# FBgn0264308 5) (# FBgn0285944 5) (# FBgn0000448 5) (# FBgn0266019 5) (# FBgn0260866 5) (# FBgn0283521 5)))
(less-frequent dmel_gene_sequence_ontology_annotations 1 (# (# FBgn0000003 1) (# FBgn0085282 1) (# FBgn0085280 1) (# FBgn0085279 1) (# FBgn0085277 1) (# FBgn0085276 1) (# FBgn0085274 1)))
(most-frequent dmel_gene_sequence_ontology_annotations 2 (# (# psq 5) (# hbt 5) (# para 5) (# Hr3 5) (# rudhira 5) (# dnr1 5) (# lola 5)))
(less-frequent dmel_gene_sequence_ontology_annotations 2 (# (# "7SLRNA:CR32864" 1) (# CG34253 1) (# CG34251 1) (# CG34250 1) (# CG34248 1) (# CG34247 1) (# CG34245 1)))
(most-frequent dmel_gene_sequence_ontology_annotations 3 (# (# "gene_with_stop_codon_read_through" 402) (# "antisense_lncRNA_gene" 507) (# gene 767) (# "gene_with_edited_transcript" 810) (# "lncRNA_gene" 1996) (# "protein_coding_gene" 13986) (# "nuclear_gene" 17707)))
(less-frequent dmel_gene_sequence_ontology_annotations 3 (# (# "sbRNA_gene" 1) (# "SRP_RNA_gene" 1) (# "RNase_MRP_RNA_gene" 1) (# "RNase_P_RNA_gene" 1) (# "mt_SSU_rRNA_gene" 1) (# "mt_LSU_rRNA_gene" 1) (# "gene_with_recoded_mRNA" 2)))
(most-frequent dmel_gene_sequence_ontology_annotations 4 (# (# "SO:0000697" 402) (# "SO:0002182" 507) (# "SO:0000704" 767) (# "SO:0000548" 810) (# "SO:0002127" 1996) (# "SO:0001217" 13986) (# "SO:0000087" 17707)))
(less-frequent dmel_gene_sequence_ontology_annotations 4 (# (# "SO:0002353" 1) (# "SO:0001269" 1) (# "SO:0001640" 1) (# "SO:0001639" 1) (# "SO:0002365" 1) (# "SO:0002364" 1) (# "SO:0000693" 2)))
;;;Skipping file: data/ftp.flybase.net/releases/current/precomputed_files/genes/dmel_unique_protein_isoforms_fb_2023_04.pl
;;------------------------------------------------------------------------------------------------------------------
;;; Analyzing file: data/ftp.flybase.net/releases/current/precomputed_files/genes/dmel_unique_protein_isoforms_fb_2023_04.tsv
!(file-name dmel_unique_protein_isoforms data/ftp.flybase.net/releases/current/precomputed_files/genes/dmel_unique_protein_isoforms_fb_2023_04.tsv)
(num-columns dmel_unique_protein_isoforms 4)
(duplicated-rows dmel_unique_protein_isoforms 0)
(total-rows dmel_unique_protein_isoforms 22452)
(unique-values dmel_unique_protein_isoforms 1 13986 object)
(unique-values dmel_unique_protein_isoforms 2 13986 object)
(unique-values dmel_unique_protein_isoforms 3 22452 object)
(unique-values dmel_unique_protein_isoforms 4 5633 object)
(missing-values dmel_unique_protein_isoforms 1 0 () ())
(missing-values dmel_unique_protein_isoforms 2 0 () ())
(missing-values dmel_unique_protein_isoforms 3 0 () ())
(null-value-count dmel_unique_protein_isoforms 4 "" 16820)
(missing-values dmel_unique_protein_isoforms 4 16820 (# "") (# 16820))
(most-frequent dmel_unique_protein_isoforms 1 (# (# FBgn0003429 23) (# FBgn0033504 25) (# FBgn0266696 25) (# FBgn0284408 25) (# FBgn0002781 31) (# FBgn0285944 57) (# FBgn0033159 75)))
(less-frequent dmel_unique_protein_isoforms 1 (# (# FBgn0000008 1) (# FBgn0038579 1) (# FBgn0038581 1) (# FBgn0038582 1) (# FBgn0038583 1) (# FBgn0038584 1) (# FBgn0038585 1)))
(most-frequent dmel_unique_protein_isoforms 2 (# (# slo 23) (# CAP 25) (# Svil 25) (# trol 25) (# "mod(mdg4)" 31) (# para 57) (# Dscam1 75)))
(less-frequent dmel_unique_protein_isoforms 2 (# (# a 1) (# CG14313 1) (# CG14314 1) (# CG7988 1) (# CG7183 1) (# mTerf5 1) (# Non3 1)))
(most-frequent dmel_unique_protein_isoforms 4 (# (# "Saf-B-PF" 1) (# "sosie-PC" 1) (# "Nct-PC" 1) (# "CG3744-PG" 1) (# "CG3744-PF" 1) (# "Not11-PC" 1)))
(less-frequent dmel_unique_protein_isoforms 4 (# (# "MAN1-PB,MAN1-PC" 1) (# "Nct-PC" 1) (# "sosie-PC" 1) (# "Saf-B-PF" 1) (# "Ude-PC,Ude-PD" 1) (# "CG5805-PB" 1) (# "atl-PB,atl-PC" 1)))
;;------------------------------------------------------------------------------------------------------------------
;;; Analyzing file: data/ftp.flybase.net/releases/current/precomputed_files/genes/fbgn_annotation_ID.tsv
!(file-name fbgn_annotation_ID data/ftp.flybase.net/releases/current/precomputed_files/genes/fbgn_annotation_ID.tsv)
(num-columns fbgn_annotation_ID 6)
(duplicated-rows fbgn_annotation_ID 0)
(total-rows fbgn_annotation_ID 17901)
(unique-values fbgn_annotation_ID 1 17901 object)
(unique-values fbgn_annotation_ID 2 1 object)
(unique-values fbgn_annotation_ID 3 17901 object)
(unique-values fbgn_annotation_ID 4 6498 object)
(unique-values fbgn_annotation_ID 5 17901 object)
(unique-values fbgn_annotation_ID 6 2214 object)
(missing-values fbgn_annotation_ID 1 0 () ())
(missing-values fbgn_annotation_ID 2 0 () ())
(missing-values fbgn_annotation_ID 3 0 () ())
(null-value-count fbgn_annotation_ID 4 "" 11059)
(missing-values fbgn_annotation_ID 4 11059 (# "") (# 11059))
(missing-values fbgn_annotation_ID 5 0 () ())
(null-value-count fbgn_annotation_ID 6 "" 15268)
(missing-values fbgn_annotation_ID 6 15268 (# "") (# 15268))
(most-frequent fbgn_annotation_ID 2 (# (# Dmel 17901)))
(less-frequent fbgn_annotation_ID 2 (# (# Dmel 17901)))
(most-frequent fbgn_annotation_ID 4 (# (# FBgn0031342 4) (# FBgn0034648 4) (# FBgn0037173 6) (# FBgn0003932 6) (# FBgn0052605 12) (# FBgn0002867 32)))
(less-frequent fbgn_annotation_ID 4 (# (# "FBgn0034701,FBgn0034702" 1) (# "FBgn0036269,FBgn0036270" 1) (# FBgn0062499 1) (# "FBgn0045834,FBgn0046807" 1) (# FBgn0060100 1) (# "FBgn0036185,FBgn0040818" 1) (# FBgn0036175 1)))
(most-frequent fbgn_annotation_ID 6 (# (# CG14398 4) (# CG15675 4) (# CG10450 4) (# CG14458 6) (# CG2149 6) (# CG32605 12)))
(less-frequent fbgn_annotation_ID 6 (# (# CG13505 1) (# "CG15275,CG15276,CG15277,CG33515" 1) (# "CG31537,CG2534" 1) (# "CG30111,CG5058" 1) (# "CG30164,CG30165,CG30166,CG4556" 1) (# "CG30179,CG30174,CG33149,CG3220" 1) (# CG14428 1)))
;;;Skipping file: data/ftp.flybase.net/releases/current/precomputed_files/genes/fbgn_annotation_ID_fb_2023_04.pl
;;------------------------------------------------------------------------------------------------------------------
;;; Analyzing file: data/ftp.flybase.net/releases/current/precomputed_files/genes/fbgn_annotation_ID_fb_2023_04.tsv
!(file-name fbgn_annotation_ID data/ftp.flybase.net/releases/current/precomputed_files/genes/fbgn_annotation_ID_fb_2023_04.tsv)
(num-columns fbgn_annotation_ID 6)
(duplicated-rows fbgn_annotation_ID 0)
(total-rows fbgn_annotation_ID 17901)
(unique-values fbgn_annotation_ID 1 17901 object)
(unique-values fbgn_annotation_ID 2 1 object)
(unique-values fbgn_annotation_ID 3 17901 object)
(unique-values fbgn_annotation_ID 4 6498 object)
(unique-values fbgn_annotation_ID 5 17901 object)
(unique-values fbgn_annotation_ID 6 2214 object)
(missing-values fbgn_annotation_ID 1 0 () ())
(missing-values fbgn_annotation_ID 2 0 () ())
(missing-values fbgn_annotation_ID 3 0 () ())
(null-value-count fbgn_annotation_ID 4 "" 11059)
(missing-values fbgn_annotation_ID 4 11059 (# "") (# 11059))
(missing-values fbgn_annotation_ID 5 0 () ())
(null-value-count fbgn_annotation_ID 6 "" 15268)
(missing-values fbgn_annotation_ID 6 15268 (# "") (# 15268))
(most-frequent fbgn_annotation_ID 2 (# (# Dmel 17901)))
(less-frequent fbgn_annotation_ID 2 (# (# Dmel 17901)))
(most-frequent fbgn_annotation_ID 4 (# (# FBgn0031342 4) (# FBgn0034648 4) (# FBgn0037173 6) (# FBgn0003932 6) (# FBgn0052605 12) (# FBgn0002867 32)))
(less-frequent fbgn_annotation_ID 4 (# (# "FBgn0034701,FBgn0034702" 1) (# "FBgn0036269,FBgn0036270" 1) (# FBgn0062499 1) (# "FBgn0045834,FBgn0046807" 1) (# FBgn0060100 1) (# "FBgn0036185,FBgn0040818" 1) (# FBgn0036175 1)))
(most-frequent fbgn_annotation_ID 6 (# (# CG14398 4) (# CG15675 4) (# CG10450 4) (# CG14458 6) (# CG2149 6) (# CG32605 12)))
(less-frequent fbgn_annotation_ID 6 (# (# CG13505 1) (# "CG15275,CG15276,CG15277,CG33515" 1) (# "CG31537,CG2534" 1) (# "CG30111,CG5058" 1) (# "CG30164,CG30165,CG30166,CG4556" 1) (# "CG30179,CG30174,CG33149,CG3220" 1) (# CG14428 1)))
;;;Skipping file: data/ftp.flybase.net/releases/current/precomputed_files/genes/fbgn_exons2affy1_overlaps.pl
;;------------------------------------------------------------------------------------------------------------------
;;; Analyzing file: data/ftp.flybase.net/releases/current/precomputed_files/genes/fbgn_exons2affy1_overlaps.tsv
!(file-name fbgn_exons2affy1_overlaps data/ftp.flybase.net/releases/current/precomputed_files/genes/fbgn_exons2affy1_overlaps.tsv)
(num-columns fbgn_exons2affy1_overlaps 30)
(duplicated-rows fbgn_exons2affy1_overlaps 0)
(total-rows fbgn_exons2affy1_overlaps 12082)
(unique-values fbgn_exons2affy1_overlaps 1 12082 object)
(unique-values fbgn_exons2affy1_overlaps 2 11598 object)
(unique-values fbgn_exons2affy1_overlaps 3 11576 object)
(unique-values fbgn_exons2affy1_overlaps 4 11569 object)
(unique-values fbgn_exons2affy1_overlaps 5 11538 object)
(unique-values fbgn_exons2affy1_overlaps 6 11509 object)
(unique-values fbgn_exons2affy1_overlaps 7 11474 object)
(unique-values fbgn_exons2affy1_overlaps 8 11449 object)
(unique-values fbgn_exons2affy1_overlaps 9 11414 object)
(unique-values fbgn_exons2affy1_overlaps 10 11387 object)
(unique-values fbgn_exons2affy1_overlaps 11 11345 object)
(unique-values fbgn_exons2affy1_overlaps 12 11314 object)
(unique-values fbgn_exons2affy1_overlaps 13 11244 object)
(unique-values fbgn_exons2affy1_overlaps 14 11171 object)
(unique-values fbgn_exons2affy1_overlaps 15 10830 object)
(unique-values fbgn_exons2affy1_overlaps 16 1808 object)
(unique-values fbgn_exons2affy1_overlaps 17 1555 object)
(unique-values fbgn_exons2affy1_overlaps 18 1450 object)
(unique-values fbgn_exons2affy1_overlaps 19 1358 object)
(unique-values fbgn_exons2affy1_overlaps 20 1308 object)
(unique-values fbgn_exons2affy1_overlaps 21 1258 object)
(unique-values fbgn_exons2affy1_overlaps 22 1213 object)
(unique-values fbgn_exons2affy1_overlaps 23 1183 object)
(unique-values fbgn_exons2affy1_overlaps 24 1139 object)
(unique-values fbgn_exons2affy1_overlaps 25 1102 object)
(unique-values fbgn_exons2affy1_overlaps 26 1058 object)
(unique-values fbgn_exons2affy1_overlaps 27 994 object)
(unique-values fbgn_exons2affy1_overlaps 28 922 object)
(unique-values fbgn_exons2affy1_overlaps 29 743 object)
(unique-values fbgn_exons2affy1_overlaps 30 34 object)
(missing-values fbgn_exons2affy1_overlaps 1 0 () ())
(missing-values fbgn_exons2affy1_overlaps 2 0 () ())
(null-value-count fbgn_exons2affy1_overlaps 3 "" 74)
(missing-values fbgn_exons2affy1_overlaps 3 74 (# "") (# 74))
(null-value-count fbgn_exons2affy1_overlaps 4 "" 105)
(missing-values fbgn_exons2affy1_overlaps 4 105 (# "") (# 105))
(null-value-count fbgn_exons2affy1_overlaps 5 "" 149)
(missing-values fbgn_exons2affy1_overlaps 5 149 (# "") (# 149))
(null-value-count fbgn_exons2affy1_overlaps 6 "" 184)
(missing-values fbgn_exons2affy1_overlaps 6 184 (# "") (# 184))
(null-value-count fbgn_exons2affy1_overlaps 7 "" 232)
(missing-values fbgn_exons2affy1_overlaps 7 232 (# "") (# 232))
(null-value-count fbgn_exons2affy1_overlaps 8 "" 265)
(missing-values fbgn_exons2affy1_overlaps 8 265 (# "") (# 265))
(null-value-count fbgn_exons2affy1_overlaps 9 "" 305)
(missing-values fbgn_exons2affy1_overlaps 9 305 (# "") (# 305))
(null-value-count fbgn_exons2affy1_overlaps 10 "" 341)
(missing-values fbgn_exons2affy1_overlaps 10 341 (# "") (# 341))
(null-value-count fbgn_exons2affy1_overlaps 11 "" 392)
(missing-values fbgn_exons2affy1_overlaps 11 392 (# "") (# 392))
(null-value-count fbgn_exons2affy1_overlaps 12 "" 425)
(missing-values fbgn_exons2affy1_overlaps 12 425 (# "") (# 425))
(null-value-count fbgn_exons2affy1_overlaps 13 "" 506)
(missing-values fbgn_exons2affy1_overlaps 13 506 (# "") (# 506))
(null-value-count fbgn_exons2affy1_overlaps 14 "" 587)
(missing-values fbgn_exons2affy1_overlaps 14 587 (# "") (# 587))
(null-value-count fbgn_exons2affy1_overlaps 15 "" 947)
(missing-values fbgn_exons2affy1_overlaps 15 947 (# "") (# 947))
(null-value-count fbgn_exons2affy1_overlaps 16 "" 10174)
(missing-values fbgn_exons2affy1_overlaps 16 10174 (# "") (# 10174))
(null-value-count fbgn_exons2affy1_overlaps 17 "" 10457)
(missing-values fbgn_exons2affy1_overlaps 17 10457 (# "") (# 10457))
(null-value-count fbgn_exons2affy1_overlaps 18 "" 10572)
(missing-values fbgn_exons2affy1_overlaps 18 10572 (# "") (# 10572))
(null-value-count fbgn_exons2affy1_overlaps 19 "" 10667)
(missing-values fbgn_exons2affy1_overlaps 19 10667 (# "") (# 10667))
(null-value-count fbgn_exons2affy1_overlaps 20 "" 10722)
(missing-values fbgn_exons2affy1_overlaps 20 10722 (# "") (# 10722))
(null-value-count fbgn_exons2affy1_overlaps 21 "" 10774)
(missing-values fbgn_exons2affy1_overlaps 21 10774 (# "") (# 10774))
(null-value-count fbgn_exons2affy1_overlaps 22 "" 10821)
(missing-values fbgn_exons2affy1_overlaps 22 10821 (# "") (# 10821))
(null-value-count fbgn_exons2affy1_overlaps 23 "" 10853)
(missing-values fbgn_exons2affy1_overlaps 23 10853 (# "") (# 10853))
(null-value-count fbgn_exons2affy1_overlaps 24 "" 10897)
(missing-values fbgn_exons2affy1_overlaps 24 10897 (# "") (# 10897))
(null-value-count fbgn_exons2affy1_overlaps 25 "" 10935)
(missing-values fbgn_exons2affy1_overlaps 25 10935 (# "") (# 10935))
(null-value-count fbgn_exons2affy1_overlaps 26 "" 10982)
(missing-values fbgn_exons2affy1_overlaps 26 10982 (# "") (# 10982))
(null-value-count fbgn_exons2affy1_overlaps 27 "" 11048)
(missing-values fbgn_exons2affy1_overlaps 27 11048 (# "") (# 11048))
(null-value-count fbgn_exons2affy1_overlaps 28 "" 11122)
(missing-values fbgn_exons2affy1_overlaps 28 11122 (# "") (# 11122))
(null-value-count fbgn_exons2affy1_overlaps 29 "" 11305)
(missing-values fbgn_exons2affy1_overlaps 29 11305 (# "") (# 11305))
(null-value-count fbgn_exons2affy1_overlaps 30 "" 12047)
(missing-values fbgn_exons2affy1_overlaps 30 12047 (# "") (# 12047))
(most-frequent fbgn_exons2affy1_overlaps 2 (# (# "151241_f_at_37" 4) (# "152093_at_1981" 4) (# "150941_f_at_119" 5) (# "151193_f_at_78" 6) (# "151224_f_at_40" 6) (# "150311_at_95" 7) (# "150941_f_at_115" 13)))
(less-frequent fbgn_exons2affy1_overlaps 2 (# (# "143052_at_1832" 1) (# "154468_at_260" 1) (# "152374_at_1177" 1) (# "151894_at_1465" 1) (# "154463_at_1950" 1) (# "154463_at_2378" 1) (# "154482_at_2296" 1)))
(most-frequent fbgn_exons2affy1_overlaps 3 (# (# "141538_at_2427" 3) (# "147260_at_95" 3) (# "155060_at_1425" 3) (# "152093_at_2013" 4) (# "151873_at_2152" 4) (# "150311_at_124" 7)))
(less-frequent fbgn_exons2affy1_overlaps 3 (# (# "143052_at_1816" 1) (# "149464_at_1100" 1) (# "142785_at_1174" 1) (# "142029_at_45" 1) (# "149466_at_2832" 1) (# "149467_at_1882" 1) (# "149468_at_757" 1)))
(most-frequent fbgn_exons2affy1_overlaps 4 (# (# "147260_at_80" 3) (# "147730_at_550" 3) (# "155060_at_1472" 3) (# "151873_at_2043" 4) (# "152093_at_2053" 4) (# "150311_at_247" 7)))
(less-frequent fbgn_exons2affy1_overlaps 4 (# (# "143052_at_1742" 1) (# "152622_at_824" 1) (# "149458_at_1158" 1) (# "149459_at_906" 1) (# "154507_at_1873" 1) (# "149463_at_2017" 1) (# "149464_at_1134" 1)))
(most-frequent fbgn_exons2affy1_overlaps 5 (# (# "147260_at_76" 3) (# "155060_at_1504" 3) (# "148466_at_864" 3) (# "151873_at_2023" 4) (# "152093_at_2081" 4) (# "150311_at_271" 7)))
(less-frequent fbgn_exons2affy1_overlaps 5 (# (# "143052_at_1727" 1) (# "154719_at_2453" 1) (# "141210_at_404" 1) (# "153896_at_1100" 1) (# "149435_at_300" 1) (# "149436_at_386" 1) (# "149441_at_1003" 1)))
(most-frequent fbgn_exons2affy1_overlaps 6 (# (# "142689_at_2404" 3) (# "151429_at_230" 3) (# "147260_at_69" 3) (# "152093_at_2097" 4) (# "151873_at_2014" 4) (# "150311_at_292" 7)))
(less-frequent fbgn_exons2affy1_overlaps 6 (# (# "143052_at_1717" 1) (# "151951_at_2428" 1) (# "154803_at_2317" 1) (# "149420_at_517" 1) (# "149421_at_366" 1) (# "154555_at_1035" 1) (# "154555_at_1375" 1)))
(most-frequent fbgn_exons2affy1_overlaps 7 (# (# "151429_at_248" 3) (# "141538_at_2265" 3) (# "155060_at_1543" 3) (# "151873_at_1834" 4) (# "152093_at_2142" 4) (# "150311_at_321" 7)))
(less-frequent fbgn_exons2affy1_overlaps 7 (# (# "143052_at_1703" 1) (# "154319_at_927" 1) (# "154993_at_1959" 1) (# "149402_at_2878" 1) (# "149403_at_625" 1) (# "149408_at_1010" 1) (# "149409_at_619" 1)))
(most-frequent fbgn_exons2affy1_overlaps 8 (# (# "151429_at_270" 3) (# "155060_at_1574" 3) (# "142689_at_2342" 3) (# "151873_at_1804" 4) (# "152093_at_2177" 4) (# "150311_at_350" 7)))
(less-frequent fbgn_exons2affy1_overlaps 8 (# (# "150941_f_at_115" 1) (# "142317_at_420" 1) (# "141883_at_323" 1) (# "149397_at_943" 1) (# "149398_at_568" 1) (# "152411_at_1798" 1) (# "149399_at_1928" 1)))
(most-frequent fbgn_exons2affy1_overlaps 9 (# (# "155060_at_1631" 3) (# "151429_at_293" 3) (# "147260_at_36" 3) (# "152093_at_2220" 4) (# "151873_at_1786" 4) (# "150311_at_358" 7)))
(less-frequent fbgn_exons2affy1_overlaps 9 (# (# "150941_f_at_113" 1) (# "149380_at_1052" 1) (# "149381_at_595" 1) (# "149382_at_343" 1) (# "149384_at_626" 1) (# "149385_at_909" 1) (# "149386_at_153" 1)))
(most-frequent fbgn_exons2affy1_overlaps 10 (# (# "142689_at_2195" 3) (# "147260_at_34" 3) (# "141538_at_2111" 3) (# "152093_at_2221" 4) (# "151873_at_1747" 4) (# "150311_at_405" 7)))
(less-frequent fbgn_exons2affy1_overlaps 10 (# (# "150941_f_at_111" 1) (# "149364_at_1814" 1) (# "149365_at_276" 1) (# "149368_at_173" 1) (# "149371_at_1969" 1) (# "149372_at_632" 1) (# "149374_at_1908" 1)))
(most-frequent fbgn_exons2affy1_overlaps 11 (# (# "151429_at_351" 3) (# "142689_at_2154" 3) (# "141538_at_2086" 3) (# "152093_at_2253" 4) (# "151873_at_1723" 4) (# "150311_at_406" 7)))
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;;;Skipping file: data/ftp.flybase.net/releases/current/precomputed_files/genes/fbgn_exons2affy2_overlaps.pl
;;------------------------------------------------------------------------------------------------------------------
;;; Analyzing file: data/ftp.flybase.net/releases/current/precomputed_files/genes/fbgn_exons2affy2_overlaps.tsv
!(file-name fbgn_exons2affy2_overlaps data/ftp.flybase.net/releases/current/precomputed_files/genes/fbgn_exons2affy2_overlaps.tsv)
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(less-frequent fbgn_exons2affy2_overlaps 13 (# (# "1636558_a_at_1379" 1) (# "1638214_at_432" 1) (# "1636893_at_32" 1) (# "1639804_at_1271" 1) (# "1628992_at_15" 1) (# "1627697_at_714" 1) (# "1635345_at_43" 1)))
(most-frequent fbgn_exons2affy2_overlaps 14 (# (# "1627339_at_73" 2) (# "1626491_at_1063" 2) (# "1634159_s_at_35" 2) (# "1626732_at_641" 2) (# "1631833_at_1383" 3) (# "1635572_at_129" 3)))
(less-frequent fbgn_exons2affy2_overlaps 14 (# (# "1636558_a_at_1365" 1) (# "1628563_at_1922" 1) (# "1636412_at_2551" 1) (# "1634418_at_1571" 1) (# "1632338_a_at_1456" 1) (# "1641119_at_581" 1) (# "1626455_s_at_584" 1)))
;;;Skipping file: data/ftp.flybase.net/releases/current/precomputed_files/genes/fbgn_fbtr_fbpp_expanded_fb_2023_04.pl
;;------------------------------------------------------------------------------------------------------------------
;;; Analyzing file: data/ftp.flybase.net/releases/current/precomputed_files/genes/fbgn_fbtr_fbpp_expanded_fb_2023_04.tsv
!(file-name fbgn_fbtr_fbpp_expanded data/ftp.flybase.net/releases/current/precomputed_files/genes/fbgn_fbtr_fbpp_expanded_fb_2023_04.tsv)
(num-columns fbgn_fbtr_fbpp_expanded 11)
(duplicated-rows fbgn_fbtr_fbpp_expanded 0)
(total-rows fbgn_fbtr_fbpp_expanded 35732)
(unique-values fbgn_fbtr_fbpp_expanded 1 1 object)
(unique-values fbgn_fbtr_fbpp_expanded 2 27 object)
(unique-values fbgn_fbtr_fbpp_expanded 3 17901 object)
(unique-values fbgn_fbtr_fbpp_expanded 4 17901 object)
(unique-values fbgn_fbtr_fbpp_expanded 5 11358 object)
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(unique-values fbgn_fbtr_fbpp_expanded 7 9 object)
(unique-values fbgn_fbtr_fbpp_expanded 8 35732 object)
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(unique-values fbgn_fbtr_fbpp_expanded 10 30803 object)
(unique-values fbgn_fbtr_fbpp_expanded 11 30803 object)
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(null-value-count fbgn_fbtr_fbpp_expanded 5 "" 11174)
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(missing-values fbgn_fbtr_fbpp_expanded 6 0 () ())
(missing-values fbgn_fbtr_fbpp_expanded 7 0 () ())
(missing-values fbgn_fbtr_fbpp_expanded 8 0 () ())
(missing-values fbgn_fbtr_fbpp_expanded 9 0 () ())
(null-value-count fbgn_fbtr_fbpp_expanded 10 "" 4930)
(missing-values fbgn_fbtr_fbpp_expanded 10 4930 (# "") (# 4930))
(null-value-count fbgn_fbtr_fbpp_expanded 11 "" 4930)
(missing-values fbgn_fbtr_fbpp_expanded 11 4930 (# "") (# 4930))
(most-frequent fbgn_fbtr_fbpp_expanded 1 (# (# Dmel 35732)))
(less-frequent fbgn_fbtr_fbpp_expanded 1 (# (# Dmel 35732)))
(most-frequent fbgn_fbtr_fbpp_expanded 2 (# (# "C_D_box_snoRNA_gene" 145) (# "tRNA_gene" 312) (# pseudogene 365) (# "antisense_lncRNA_gene" 621) (# "miRNA_gene" 747) (# "lncRNA_gene" 2374) (# "protein_coding_gene" 30802)))
(less-frequent fbgn_fbtr_fbpp_expanded 2 (# (# "sbRNA_gene" 1) (# "SRP_RNA_gene" 1) (# "mt_LSU_rRNA_gene" 1) (# "mt_SSU_rRNA_gene" 1) (# "RNase_MRP_RNA_gene" 1) (# "cytosolic_rRNA_28S_gene" 2) (# "RNA_7SK_gene" 2)))
(most-frequent fbgn_fbtr_fbpp_expanded 3 (# (# FBgn0011224 25) (# FBgn0284408 25) (# FBgn0033504 28) (# FBgn0266696 31) (# FBgn0002781 31) (# FBgn0285944 60) (# FBgn0033159 75)))
(less-frequent fbgn_fbtr_fbpp_expanded 3 (# (# FBgn0038809 1) (# FBgn0051812 1) (# FBgn0051815 1) (# FBgn0051816 1) (# FBgn0051822 1) (# FBgn0051823 1) (# FBgn0051824 1)))
(most-frequent fbgn_fbtr_fbpp_expanded 4 (# (# heph 25) (# trol 25) (# CAP 28) (# Svil 31) (# "mod(mdg4)" 31) (# para 60) (# Dscam1 75)))
(less-frequent fbgn_fbtr_fbpp_expanded 4 (# (# CG16953 1) (# Tsen2 1) (# CG31815 1) (# CG31816 1) (# CR31822 1) (# CG31823 1) (# CR31824 1)))
(most-frequent fbgn_fbtr_fbpp_expanded 5 (# (# hephaestus 25) (# CAP 28) (# "modifier of mdg4" 31) (# Supervillin 31) (# paralytic 60) (# "Down syndrome cell adhesion molecule 1" 75)))
(less-frequent fbgn_fbtr_fbpp_expanded 5 (# (# "long non-coding RNA:CR46535" 1) (# "Gustatory receptor 22e" 1) (# "long non-coding RNA:CR45471" 1) (# "Gustatory receptor 36a" 1) (# "Gustatory receptor 36b" 1) (# "Gustatory receptor 36c" 1) (# "Gustatory receptor 59a" 1)))
(most-frequent fbgn_fbtr_fbpp_expanded 6 (# (# CG31000 25) (# CG33950 25) (# CG18408 28) (# CG45186 31) (# CG32491 31) (# CG9907 60) (# CG17800 75)))
(less-frequent fbgn_fbtr_fbpp_expanded 6 (# (# CG16953 1) (# CG31812 1) (# CG31815 1) (# CG31816 1) (# CR31822 1) (# CG31823 1) (# CR31824 1)))
(most-frequent fbgn_fbtr_fbpp_expanded 7 (# (# "pre_miRNA" 262) (# snoRNA 300) (# tRNA 312) (# pseudogene 365) (# miRNA 485) (# ncRNA 3059) (# mRNA 30802)))
(less-frequent fbgn_fbtr_fbpp_expanded 7 (# (# snRNA 32) (# rRNA 115) (# "pre_miRNA" 262) (# snoRNA 300) (# tRNA 312) (# pseudogene 365) (# miRNA 485)))
(most-frequent fbgn_fbtr_fbpp_expanded 10 (# (# FBpp0309148 1) (# FBpp0074581 1) (# FBpp0290917 1) (# FBpp0308522 1) (# FBpp0304236 1) (# FBpp0071677 1)))
(less-frequent fbgn_fbtr_fbpp_expanded 10 (# (# FBpp0071677 1) (# FBpp0308522 1) (# FBpp0290917 1) (# FBpp0074581 1) (# FBpp0309148 1) (# FBpp0071045 1) (# FBpp0084559 1)))
(most-frequent fbgn_fbtr_fbpp_expanded 11 (# (# "p115-PB" 1) (# "meso18E-PA" 1) (# "meso18E-PB" 1) (# "meso18E-PC" 1) (# "rept-PB" 1) (# "a-PA" 1)))
(less-frequent fbgn_fbtr_fbpp_expanded 11 (# (# "a-PA" 1) (# "meso18E-PC" 1) (# "meso18E-PB" 1) (# "meso18E-PA" 1) (# "p115-PB" 1) (# "p115-PA" 1) (# "pins-PA" 1)))
;;;Skipping file: data/ftp.flybase.net/releases/current/precomputed_files/genes/fbgn_fbtr_fbpp_fb_2023_04.pl
;;------------------------------------------------------------------------------------------------------------------
;;; Analyzing file: data/ftp.flybase.net/releases/current/precomputed_files/genes/fbgn_fbtr_fbpp_fb_2023_04.tsv
!(file-name fbgn_fbtr_fbpp data/ftp.flybase.net/releases/current/precomputed_files/genes/fbgn_fbtr_fbpp_fb_2023_04.tsv)
(num-columns fbgn_fbtr_fbpp 3)
(duplicated-rows fbgn_fbtr_fbpp 0)
(total-rows fbgn_fbtr_fbpp 35732)
(unique-values fbgn_fbtr_fbpp 1 17901 object)
(unique-values fbgn_fbtr_fbpp 2 35732 object)
(unique-values fbgn_fbtr_fbpp 3 30803 object)
(missing-values fbgn_fbtr_fbpp 1 0 () ())
(missing-values fbgn_fbtr_fbpp 2 0 () ())
(null-value-count fbgn_fbtr_fbpp 3 "" 4930)
(missing-values fbgn_fbtr_fbpp 3 4930 (# "") (# 4930))
(most-frequent fbgn_fbtr_fbpp 1 (# (# FBgn0011224 25) (# FBgn0284408 25) (# FBgn0033504 28) (# FBgn0266696 31) (# FBgn0002781 31) (# FBgn0285944 60) (# FBgn0033159 75)))
(less-frequent fbgn_fbtr_fbpp 1 (# (# FBgn0038809 1) (# FBgn0051812 1) (# FBgn0051815 1) (# FBgn0051816 1) (# FBgn0051822 1) (# FBgn0051823 1) (# FBgn0051824 1)))
(most-frequent fbgn_fbtr_fbpp 3 (# (# FBpp0309148 1) (# FBpp0074581 1) (# FBpp0290917 1) (# FBpp0308522 1) (# FBpp0304236 1) (# FBpp0071677 1)))
(less-frequent fbgn_fbtr_fbpp 3 (# (# FBpp0071677 1) (# FBpp0308522 1) (# FBpp0290917 1) (# FBpp0074581 1) (# FBpp0309148 1) (# FBpp0071045 1) (# FBpp0084559 1)))
;;;Skipping file: data/ftp.flybase.net/releases/current/precomputed_files/genes/fbgn_gleanr_fb_2023_04.pl
;;------------------------------------------------------------------------------------------------------------------
;;; Analyzing file: data/ftp.flybase.net/releases/current/precomputed_files/genes/fbgn_gleanr_fb_2023_04.tsv
!(file-name fbgn_gleanr data/ftp.flybase.net/releases/current/precomputed_files/genes/fbgn_gleanr_fb_2023_04.tsv)
(num-columns fbgn_gleanr 4)
(duplicated-rows fbgn_gleanr 535)
(total-rows fbgn_gleanr 174893)
(unique-values fbgn_gleanr 1 11 object)
(unique-values fbgn_gleanr 2 174055 object)
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(missing-values fbgn_gleanr 1 0 () ())
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(missing-values fbgn_gleanr 4 0 () ())
(most-frequent fbgn_gleanr 1 (# (# Dere 15380) (# Dwil 15874) (# Dsim 16038) (# Dpse 16475) (# Dyak 16483) (# Dsec 16945) (# Dper 17373)))
(less-frequent fbgn_gleanr 1 (# (# Dvir 14755) (# Dmoj 14922) (# Dgri 15319) (# Dana 15329) (# Dere 15380) (# Dwil 15874) (# Dsim 16038)))
(most-frequent fbgn_gleanr 2 (# (# "Dpse\\GA30155" 4) (# "Dpse\\GA30065" 4) (# "Dpse\\GA30499" 4) (# "Dpse\\GA30462" 4) (# "Dpse\\GA30119" 5) (# "Dpse\\GA30479" 5) (# "Dpse\\GA30442" 11)))
(less-frequent fbgn_gleanr 2 (# (# "Dper\\GL22947" 1) (# "Dwil\\GK16453" 1) (# "Dwil\\GK11213" 1) (# "Dwil\\GK16551" 1) (# "Dwil\\GK11264" 1) (# "Dwil\\GK11214" 1) (# "Dwil\\GK11265" 1)))
(most-frequent fbgn_gleanr 3 (# (# FBgn0263057 4) (# FBgn0263238 4) (# FBgn0265036 4) (# FBgn0264756 4) (# FBgn0262499 5) (# FBgn0264773 5) (# FBgn0264579 11)))
(less-frequent fbgn_gleanr 3 (# (# FBgn0160537 1) (# FBgn0218455 1) (# FBgn0213224 1) (# FBgn0218553 1) (# FBgn0213275 1) (# FBgn0213225 1) (# FBgn0213276 1)))
(most-frequent fbgn_gleanr 4 (# (# "dgri_GLEANR_4274" 2) (# "dana_GLEANR_19894" 2) (# "dgri_GLEANR_7321" 2) (# "dgri_GLEANR_14174" 2) (# "dpse_GLEANR_5123" 3) (# "dpse_GLEANR_4701" 4) (# "dpse_GLEANR_8878" 4)))
(less-frequent fbgn_gleanr 4 (# (# "dsim_GLEANR_6342" 1) (# "dwil_GLEANR_16628" 1) (# "dwil_GLEANR_11555" 1) (# "dwil_GLEANR_11556" 1) (# "dwil_GLEANR_11460" 1) (# "dwil_GLEANR_11461" 1) (# "dwil_GLEANR_11557" 1)))
;;;Skipping file: data/ftp.flybase.net/releases/current/precomputed_files/genes/fbgn_NAseq_Uniprot_fb_2023_04.pl
;;------------------------------------------------------------------------------------------------------------------
;;; Analyzing file: data/ftp.flybase.net/releases/current/precomputed_files/genes/fbgn_NAseq_Uniprot_fb_2023_04.tsv
!(file-name fbgn_NAseq_Uniprot data/ftp.flybase.net/releases/current/precomputed_files/genes/fbgn_NAseq_Uniprot_fb_2023_04.tsv)
(num-columns fbgn_NAseq_Uniprot 9)
(duplicated-rows fbgn_NAseq_Uniprot 0)
(total-rows fbgn_NAseq_Uniprot 1316132)
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(unique-values fbgn_NAseq_Uniprot 8 34349 object)
(unique-values fbgn_NAseq_Uniprot 9 30241 object)
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(null-value-count fbgn_NAseq_Uniprot 9 "" 1285892)
(missing-values fbgn_NAseq_Uniprot 9 1285892 (# "") (# 1285892))
(most-frequent fbgn_NAseq_Uniprot 1 (# (# sta 1332) (# RpL5 1362) (# alphaTub84B 1442) (# "Hsc70-4" 1611) (# ninaE 1699) (# eEF2 2370) (# eEF1alpha1 2383)))
(less-frequent fbgn_NAseq_Uniprot 1 (# (# "Hsap\\FSBP" 1) (# "Dyak\\GE14653" 1) (# "Dyak\\GE14652" 1) (# "Dere\\GG16178" 1) (# "Dyak\\GE14651" 1) (# "Dyak\\GE14650" 1) (# "Dyak\\GE14649" 1)))
(most-frequent fbgn_NAseq_Uniprot 2 (# (# Dper 34397) (# Dmoj 34929) (# Dvir 35196) (# Dsim 37463) (# Dana 38929) (# Dyak 39546) (# Dmel 938032)))
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(less-frequent fbgn_NAseq_Uniprot 3 (# (# FBgn0289485 1) (# FBgn0232248 1) (# FBgn0232247 1) (# FBgn0108413 1) (# FBgn0232246 1) (# FBgn0232245 1) (# FBgn0232244 1)))
(most-frequent fbgn_NAseq_Uniprot 4 (# (# CH379071 439) (# AE014298 5350) (# AE014134 5651) (# AE014296 5875) (# AE013599 6054) (# AE014297 7206)))
(less-frequent fbgn_NAseq_Uniprot 4 (# (# J01122 1) (# GH739917 1) (# GH740238 1) (# GH740504 1) (# GH740582 1) (# GH740722 1) (# GH741128 1)))
(most-frequent fbgn_NAseq_Uniprot 5 (# (# AAA28968 9) (# CAA38960 9) (# AAA28969 9) (# AAA28966 9) (# AAC47002 9) (# AAA28425 10)))
(less-frequent fbgn_NAseq_Uniprot 5 (# (# AFH08132 1) (# AAG22409 1) (# AAL28803 1) (# AAL57756 1) (# AAF46261 1) (# AAF46262 1) (# AAM29624 1)))
(most-frequent fbgn_NAseq_Uniprot 6 (# (# P02283 24) (# P84052 31) (# Q76FD7 40) (# Q76FE2 47) (# Q76N00 50) (# Q76FD9 65)))
(less-frequent fbgn_NAseq_Uniprot 6 (# (# A1ZAK1 1) (# B4R037 1) (# B4R038 1) (# B4R040 1) (# B4R043 1) (# B4R044 1) (# B4R047 1)))
(most-frequent fbgn_NAseq_Uniprot 7 (# (# 6632090.0 1) (# 6627682.0 1) (# 6631334.0 1) (# 6631316.0 1) (# 6634144.0 1) (# 6624472.0 1)))
(less-frequent fbgn_NAseq_Uniprot 7 (# (# 6611558.0 1) (# 6634144.0 1) (# 6631316.0 1) (# 6631334.0 1) (# 6627682.0 1) (# 6632090.0 1) (# 6632175.0 1)))
(most-frequent fbgn_NAseq_Uniprot 8 (# (# "NM_168111" 1) (# "NM_168136" 1) (# "NM_168145" 1) (# "NM_168144" 1) (# "NM_001169879" 1) (# "NM_134950" 2)))
(less-frequent fbgn_NAseq_Uniprot 8 (# (# "NM_141332" 1) (# "NM_001274510" 1) (# "NM_001274509" 1) (# "NM_001259707" 1) (# "NM_001169879" 1) (# "NM_168112" 1) (# "NM_168113" 1)))
(most-frequent fbgn_NAseq_Uniprot 9 (# (# "NP_001137539" 1) (# "NP_001287647" 1) (# "NP_001287648" 1) (# "NP_001104474" 1) (# "NP_001188370" 1) (# "NP_001287646" 1)))
(less-frequent fbgn_NAseq_Uniprot 9 (# (# "NP_648102" 1) (# "NP_001287648" 1) (# "NP_001287647" 1) (# "NP_001137539" 1) (# "NP_001104473" 1) (# "NP_001104472" 1) (# "NP_001104471" 1)))
;;;Skipping file: data/ftp.flybase.net/releases/current/precomputed_files/genes/gene_functional_complementation_fb_2023_04.pl
;;------------------------------------------------------------------------------------------------------------------
;;; Analyzing file: data/ftp.flybase.net/releases/current/precomputed_files/genes/gene_functional_complementation_fb_2023_04.tsv
!(file-name gene_functional_complementation data/ftp.flybase.net/releases/current/precomputed_files/genes/gene_functional_complementation_fb_2023_04.tsv)
(num-columns gene_functional_complementation 5)
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(most-frequent gene_functional_complementation 2 (# (# FBgn0038816 5) (# FBgn0029870 5) (# FBgn0029891 5) (# FBgn0004102 7) (# FBgn0264975 7) (# FBgn0041605 8) (# FBgn0025790 8)))
(less-frequent gene_functional_complementation 2 (# (# FBgn0037671 1) (# FBgn0004859 1) (# FBgn0027598 1) (# FBgn0034087 1) (# FBgn0000337 1) (# FBgn0034577 1) (# FBgn0000382 1)))
(most-frequent gene_functional_complementation 3 (# (# "Hsap\\MFN2" 4) (# "Hsap\\SOD1" 4) (# "Hsap\\L1CAM" 4) (# "Hsap\\PARK7" 4) (# "Hsap\\PINK1" 5) (# "Hsap\\LRRK2" 5) (# "Hsap\\TARDBP" 7)))
(less-frequent gene_functional_complementation 3 (# (# "Hsap\\ATP6AP2" 1) (# "Hsap\\EIF4A2" 1) (# "Hsap\\DROSHA" 1) (# "Hsap\\GRAP" 1) (# "Hsap\\SUPT16H" 1) (# "Hsap\\SRCAP" 1) (# "Hsap\\PIN1" 1)))
(most-frequent gene_functional_complementation 4 (# (# FBgn0265221 4) (# FBgn0024960 4) (# FBgn0026071 4) (# FBgn0086735 4) (# FBgn0086479 5) (# FBgn0262113 5) (# FBgn0261084 7)))
(less-frequent gene_functional_complementation 4 (# (# FBgn0262153 1) (# FBgn0289163 1) (# FBgn0289120 1) (# FBgn0286886 1) (# FBgn0289345 1) (# FBgn0283711 1) (# FBgn0288530 1)))
(most-frequent gene_functional_complementation 5 (# (# FBrf0216943 3) (# FBrf0210782 3) (# FBrf0146918 3) (# FBrf0242427 3) (# FBrf0184161 4) (# FBrf0252066 4) (# FBrf0212111 4)))
(less-frequent gene_functional_complementation 5 (# (# FBrf0211368 1) (# FBrf0101988 1) (# FBrf0193931 1) (# FBrf0227402 1) (# FBrf0230449 1) (# FBrf0188025 1) (# FBrf0174932 1)))
;;;Skipping file: data/ftp.flybase.net/releases/current/precomputed_files/genes/gene_genetic_interactions_fb_2023_04.pl
;;------------------------------------------------------------------------------------------------------------------
;;; Analyzing file: data/ftp.flybase.net/releases/current/precomputed_files/genes/gene_genetic_interactions_fb_2023_04.tsv
!(file-name gene_genetic_interactions data/ftp.flybase.net/releases/current/precomputed_files/genes/gene_genetic_interactions_fb_2023_04.tsv)
(num-columns gene_genetic_interactions 6)
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(most-frequent gene_genetic_interactions 3 (# (# wg 110) (# puc 117) (# Ras85D 141) (# Egfr 158) (# Diap1 163) (# N 174) (# bsk 181)))
(less-frequent gene_genetic_interactions 3 (# (# "Su(tor)278-22" 1) (# CG32982 1) (# CG15599 1) (# "Su(E1)-A" 1) (# "mir-13b-2" 1) (# EP1095 1) (# "S(Sev-CycE)D28" 1)))
(most-frequent gene_genetic_interactions 4 (# (# FBgn0284084 110) (# FBgn0243512 117) (# FBgn0003205 141) (# FBgn0003731 158) (# FBgn0260635 163) (# FBgn0004647 174) (# FBgn0000229 181)))
(less-frequent gene_genetic_interactions 4 (# (# FBgn0026335 1) (# FBgn0052982 1) (# FBgn0030667 1) (# FBgn0262767 1) (# FBgn0262421 1) (# FBgn0062701 1) (# FBgn0041783 1)))
(most-frequent gene_genetic_interactions 5 (# (# enhanceable 7874) (# suppressible 12447)))
(less-frequent gene_genetic_interactions 5 (# (# enhanceable 7874) (# suppressible 12447)))
(most-frequent gene_genetic_interactions 6 (# (# FBrf0190765 83) (# FBrf0188528 88) (# FBrf0190751 89) (# FBrf0187664 105) (# FBrf0147055 149) (# FBrf0199094 151) (# FBrf0241270 160)))
(less-frequent gene_genetic_interactions 6 (# (# FBrf0221584 1) (# FBrf0231072 1) (# FBrf0102734 1) (# FBrf0190193 1) (# FBrf0229219 1) (# FBrf0226148 1) (# FBrf0208690 1)))
;;;Skipping file: data/ftp.flybase.net/releases/current/precomputed_files/genes/gene_groups_HGNC_fb_2023_04.pl
;;------------------------------------------------------------------------------------------------------------------
;;; Analyzing file: data/ftp.flybase.net/releases/current/precomputed_files/genes/gene_groups_HGNC_fb_2023_04.tsv
!(file-name gene_groups_HGNC data/ftp.flybase.net/releases/current/precomputed_files/genes/gene_groups_HGNC_fb_2023_04.tsv)
(num-columns gene_groups_HGNC 4)
(duplicated-rows gene_groups_HGNC 0)
(total-rows gene_groups_HGNC 1711)
(unique-values gene_groups_HGNC 1 1699 object)
(unique-values gene_groups_HGNC 2 1699 object)
(unique-values gene_groups_HGNC 3 1699 object)
(unique-values gene_groups_HGNC 4 506 object)
(missing-values gene_groups_HGNC 1 0 () ())
(missing-values gene_groups_HGNC 2 0 () ())
(missing-values gene_groups_HGNC 3 0 () ())
(null-value-count gene_groups_HGNC 4 "" 1192)
(missing-values gene_groups_HGNC 4 1192 (# "") (# 1192))
(most-frequent gene_groups_HGNC 1 (# (# FBgg0000526 2) (# FBgg0000112 2) (# FBgg0000738 2) (# FBgg0000588 2) (# FBgg0000792 2) (# FBgg0000083 3) (# FBgg0000279 3)))
(less-frequent gene_groups_HGNC 1 (# (# FBgg0000451 1) (# FBgg0000651 1) (# FBgg0001307 1) (# FBgg0000697 1) (# FBgg0000072 1) (# FBgg0000437 1) (# FBgg0001352 1)))
(most-frequent gene_groups_HGNC 2 (# (# SM 2) (# INX 2) (# PRDTF 2) (# "CAC-U" 2) (# E2FTF 2) (# SYT 3) (# "RPD3-HDA1" 3)))
(less-frequent gene_groups_HGNC 2 (# (# "TRNA-C-THR-CGT" 1) (# NAT 1) (# APAS 1) (# SLC33 1) (# ADAM 1) (# "TRNA-C-LEU-TAA" 1) (# "N-GH" 1)))
(most-frequent gene_groups_HGNC 3 (# (# "SPLICEOSOMAL SM PROTEINS" 2) (# INNEXINS 2) (# "PAIRED TRANSCRIPTION FACTORS" 2) (# "UNCLASSIFIED CALCIUM CHANNEL-FORMING SUBUNITS" 2) (# "E2F TRANSCRIPTION FACTORS" 2) (# "SYNAPTOTAGMINS & SYNAPTOTAGMIN-LIKE PROTEINS" 3) (# "RPD3/HDA1 LYSINE DEACETYLASES" 3)))
(less-frequent gene_groups_HGNC 3 (# (# "CYTOSOLIC THREONINE-CGT TRANSFER RNAS" 1) (# "N-TERMINAL ACETYLTRANSFERASE CATALYTIC SUBUNITS" 1) (# ASPARAGINASES 1) (# "SLC33 ACETYL-COA TRANSPORTERS" 1) (# "ADAM METALLOPROTEASES" 1) (# "CYTOSOLIC LEUCINE-TAA TRANSFER RNAS" 1) (# "N-GLYCOSYL HYDROLASES" 1)))
(most-frequent gene_groups_HGNC 4 (# (# 1281.0 2) (# 363.0 2) (# 434.0 2) (# 816.0 2) (# 1254.0 2) (# 669.0 2)))
(less-frequent gene_groups_HGNC 4 (# (# 346.0 1) (# 1654.0 1) (# 1585.0 1) (# 1419.0 1) (# 2154.0 1) (# 262.0 1) (# 1027.0 1)))
;;;Skipping file: data/ftp.flybase.net/releases/current/precomputed_files/genes/gene_group_data_fb_2023_04.pl
;;------------------------------------------------------------------------------------------------------------------
;;; Analyzing file: data/ftp.flybase.net/releases/current/precomputed_files/genes/gene_group_data_fb_2023_04.tsv
!(file-name gene_group_data data/ftp.flybase.net/releases/current/precomputed_files/genes/gene_group_data_fb_2023_04.tsv)
(num-columns gene_group_data 7)
(duplicated-rows gene_group_data 0)
(total-rows gene_group_data 10957)
(unique-values gene_group_data 1 1629 object)
(unique-values gene_group_data 2 1629 object)
(unique-values gene_group_data 3 1629 object)
(unique-values gene_group_data 4 389 object)
(unique-values gene_group_data 5 389 object)
(unique-values gene_group_data 6 8251 object)
(unique-values gene_group_data 7 8251 object)
(missing-values gene_group_data 1 0 () ())
(missing-values gene_group_data 2 0 () ())
(missing-values gene_group_data 3 0 () ())
(null-value-count gene_group_data 4 "" 1106)
(missing-values gene_group_data 4 1106 (# "") (# 1106))
(null-value-count gene_group_data 5 "" 1106)
(missing-values gene_group_data 5 1106 (# "") (# 1106))
(null-value-count gene_group_data 6 "" 405)
(missing-values gene_group_data 6 405 (# "") (# 405))
(null-value-count gene_group_data 7 "" 405)
(missing-values gene_group_data 7 405 (# "") (# 405))
(most-frequent gene_group_data 1 (# (# FBgg0000128 98) (# FBgg0001176 105) (# FBgg0001186 106) (# FBgg0001078 114) (# FBgg0000097 120) (# FBgg0001077 136) (# FBgg0000732 272)))
(less-frequent gene_group_data 1 (# (# FBgg0001756 1) (# FBgg0000834 1) (# FBgg0001677 1) (# FBgg0000396 1) (# FBgg0000921 1) (# FBgg0000512 1) (# FBgg0000662 1)))
(most-frequent gene_group_data 2 (# (# "E3-RING-U" 98) (# CPR 105) (# CBD 106) (# "SP-T" 114) (# OR 120) (# "S1A-NPH" 136) (# "ZF-C2H2" 272)))
(less-frequent gene_group_data 2 (# (# UFM1 1) (# GH47 1) (# GH99 1) (# "TRNA-C-ASP" 1) (# MDH 1) (# KCN 1) (# SLC7 1)))
(most-frequent gene_group_data 3 (# (# "UNCLASSIFIED RING DOMAIN UBIQUITIN LIGASES" 98) (# "CPR CUTICLE PROTEIN FAMILY" 105) (# "CHITIN BINDING DOMAIN-CONTAINING PROTEINS" 106) (# "S1A SERINE PROTEASES - TRYPSIN-LIKE" 114) (# "ODORANT RECEPTORS" 120) (# "S1A NON-PEPTIDASE HOMOLOGS" 136) (# "C2H2 ZINC FINGER TRANSCRIPTION FACTORS" 272)))
(less-frequent gene_group_data 3 (# (# "UFM1 PROTEINS" 1) (# "CLASS I ALPHA-MANNOSIDASES" 1) (# "ENDO-ALPHA MANNOSIDASES" 1) (# "CYTOSOLIC ASPARTIC ACID TRANSFER RNAS" 1) (# "MALATE DEHYDROGENASES" 1) (# "POTASSIUM CHANNEL SUBUNITS" 1) (# "SLC7 FAMILY OF AMINO ACID TRANSPORTERS" 1)))
(most-frequent gene_group_data 4 (# (# FBgg0001178 162) (# FBgg0001841 178) (# FBgg0001076 190) (# FBgg0000729 277) (# FBgg0000537 318) (# FBgg0000686 392)))
(less-frequent gene_group_data 4 (# (# FBgg0001357 1) (# FBgg0000408 1) (# FBgg0001039 1) (# FBgg0001844 2) (# FBgg0001637 2) (# FBgg0000582 2) (# FBgg0000130 2)))
(most-frequent gene_group_data 5 (# (# CP 162) (# "OXPHOS-V" 178) (# S1AP 190) (# "ZN-TF" 277) (# "SPL-INT" 318) (# SLC 392)))
(less-frequent gene_group_data 5 (# (# ETH 1) (# "TRNA-C-SEC" 1) (# OXRPX 1) (# "PSM-G" 2) (# LADAC 2) (# IC 2) (# RP 2)))
(most-frequent gene_group_data 6 (# (# FBgn0261933 10) (# FBgn0000426 13) (# FBgn0261790 13) (# FBgn0261791 13) (# FBgn0023167 13) (# FBgn0262601 13)))
(less-frequent gene_group_data 6 (# (# FBgn0002565 1) (# FBgn0052671 1) (# FBgn0262518 1) (# FBgn0037364 1) (# FBgn0005586 1) (# FBgn0015791 1) (# FBgn0015795 1)))
(most-frequent gene_group_data 7 (# (# SmD1 10) (# SmF 13) (# SmE 13) (# SNRPG 13) (# SmD3 13) (# SmB 13)))
(less-frequent gene_group_data 7 (# (# Lsp2 1) (# Rab9Fa 1) (# Rab8 1) (# Rab23 1) (# Rab3 1) (# Rab14 1) (# Rab7 1)))
;;;Skipping file: data/ftp.flybase.net/releases/current/precomputed_files/genes/gene_map_table_fb_2023_04.pl
;;------------------------------------------------------------------------------------------------------------------
;;; Analyzing file: data/ftp.flybase.net/releases/current/precomputed_files/genes/gene_map_table_fb_2023_04.tsv
!(file-name gene_map_table data/ftp.flybase.net/releases/current/precomputed_files/genes/gene_map_table_fb_2023_04.tsv)
(num-columns gene_map_table 6)
(duplicated-rows gene_map_table 0)
(total-rows gene_map_table 245829)
(unique-values gene_map_table 1 542 object)
(unique-values gene_map_table 2 245829 object)
(unique-values gene_map_table 3 245829 object)
(unique-values gene_map_table 4 1716 object)
(unique-values gene_map_table 5 8138 object)
(unique-values gene_map_table 6 17721 object)
(missing-values gene_map_table 1 0 () ())
(missing-values gene_map_table 2 0 () ())
(missing-values gene_map_table 3 0 () ())
(null-value-count gene_map_table 4 "" 208914)
(missing-values gene_map_table 4 208914 (# "") (# 208914))
(null-value-count gene_map_table 5 "" 222613)
(null-value-count gene_map_table 5 "-" 105)
(missing-values gene_map_table 5 222718 (# "" "-") (# 222613 105))
(null-value-count gene_map_table 6 "" 227926)
(missing-values gene_map_table 6 227926 (# "") (# 227926))
(most-frequent gene_map_table 1 (# (# Dper 18137) (# Dana 18521) (# Dwil 18542) (# Dyak 19506) (# Dsim 20501) (# Dpse 22460) (# Dmel 31755)))
(less-frequent gene_map_table 1 (# (# Dmos 1) (# Dsch 1) (# Dprg 1) (# Dpme 1) (# Dmds 1) (# Dbis 1) (# Dsut 1)))
(most-frequent gene_map_table 4 (# (# "1-" 1161) (# "XL-" 1883) (# "4-" 2182) (# "XR-" 2261) (# "3-" 3567) (# "2-" 4139)))
(less-frequent gene_map_table 4 (# (# "2-[90]" 1) (# "3-50-62" 1) (# "1-38.4" 1) (# "3-[76]" 1) (# "3-[25]" 1) (# "1-[61]" 1) (# "2-[24]" 1)))
(most-frequent gene_map_table 5 (# (# "61-100" 47) (# "39D5-39D5" 47) (# "21E2-21E2" 73) (# "56E2-56E2" 123) (# "21-60" 132)))
(less-frequent gene_map_table 5 (# (# "92A2-92A3" 1) (# "18E5-18F1" 1) (# "78A2-78B1" 1) (# "95C5-95C8" 1) (# "18B8-18B8" 1) (# "61F2-61F3" 1) (# "53A2-53A3" 1)))
(most-frequent gene_map_table 6 (# (# "2R:10351533..10352161(-1)" 3) (# "2R:13209809..13212237(-1)" 3) (# "3R:21365609..21368279(1)" 3) (# "2R:21667541..21669916(-1)" 4) (# "3R:13813109..13814648(1)" 4) (# "3R:21355692..21359768(-1)" 5)))
(less-frequent gene_map_table 6 (# (# "3R:19373757..19374789(-1)" 1) (# "3L:11574764..11577044(-1)" 1) (# "3L:11572797..11574663(-1)" 1) (# "X:20178755..20179729(-1)" 1) (# "3L:10692530..10693167(-1)" 1) (# "3R:25493481..25495161(-1)" 1) (# "X:20186630..20187604(-1)" 1)))
;;;Skipping file: data/ftp.flybase.net/releases/current/precomputed_files/genes/gene_rpkm_matrix_fb_2023_04.pl
;;------------------------------------------------------------------------------------------------------------------
;;; Analyzing file: data/ftp.flybase.net/releases/current/precomputed_files/genes/gene_rpkm_matrix_fb_2023_04.tsv
;; /opt/logicmoo_workspace/packs_sys/logicmoo_opencog/MeTTa/vspace-metta/metta_vspace/metta_learner.py:3098: DtypeWarning: Columns (46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,102,103,104,105,106,107,108,109,110,111,112,113,114,115,116,117,118,119,120,121,122,123,124,125,126,127) have mixed types. Specify dtype option on import or set low_memory=False.
;; return pd.read_csv(file_path, sep=sep, encoding=enc, comment='#',
!(file-name gene_rpkm_matrix data/ftp.flybase.net/releases/current/precomputed_files/genes/gene_rpkm_matrix_fb_2023_04.tsv)
(num-columns gene_rpkm_matrix 170)
(duplicated-rows gene_rpkm_matrix 0)
(total-rows gene_rpkm_matrix 17747)
(unique-values gene_rpkm_matrix 1 17747 object)
(unique-values gene_rpkm_matrix 2 17747 object)
(unique-values gene_rpkm_matrix 3 11214 object)
;;;Skipping file: data/ftp.flybase.net/releases/current/precomputed_files/genes/gene_rpkm_report_fb_2023_04.pl
;;------------------------------------------------------------------------------------------------------------------
;;; Analyzing file: data/ftp.flybase.net/releases/current/precomputed_files/genes/gene_rpkm_report_fb_2023_04.tsv
;; /opt/logicmoo_workspace/packs_sys/logicmoo_opencog/MeTTa/vspace-metta/metta_vspace/metta_learner.py:3098: DtypeWarning: Columns (9) have mixed types. Specify dtype option on import or set low_memory=False.
;; return pd.read_csv(file_path, sep=sep, encoding=enc, comment='#',
!(file-name gene_rpkm_report data/ftp.flybase.net/releases/current/precomputed_files/genes/gene_rpkm_report_fb_2023_04.tsv)
(num-columns gene_rpkm_report 12)
(duplicated-rows gene_rpkm_report 0)
(total-rows gene_rpkm_report 2928711)
(unique-values gene_rpkm_report 1 1 object)
(unique-values gene_rpkm_report 2 17748 object)
(unique-values gene_rpkm_report 3 17748 object)
(unique-values gene_rpkm_report 4 7 object)
(unique-values gene_rpkm_report 5 7 object)
(unique-values gene_rpkm_report 6 166 object)
(unique-values gene_rpkm_report 7 166 object)
(unique-values gene_rpkm_report 8 5113 int64)
(unique-values gene_rpkm_report 9 8 int64)
(unique-values gene_rpkm_report 10 6776 object)
(unique-values gene_rpkm_report 11 5412 int64)
(unique-values gene_rpkm_report 12 2 object)
(missing-values gene_rpkm_report 1 0 () ())
(missing-values gene_rpkm_report 2 0 () ())
(missing-values gene_rpkm_report 3 0 () ())
(missing-values gene_rpkm_report 4 0 () ())
(missing-values gene_rpkm_report 5 0 () ())
(missing-values gene_rpkm_report 6 0 () ())
(missing-values gene_rpkm_report 7 0 () ())
(missing-values gene_rpkm_report 8 0 () ())
(missing-values gene_rpkm_report 9 0 () ())
(null-value-count gene_rpkm_report 10 "" 60536)
(missing-values gene_rpkm_report 10 60536 (# "") (# 60536))
(missing-values gene_rpkm_report 11 0 () ())
(missing-values gene_rpkm_report 12 0 () ())
(most-frequent gene_rpkm_report 1 (# (# "Dmel_R6.53" 2928711)))
(less-frequent gene_rpkm_report 1 (# (# "Dmel_R6.53" 2928711)))
(most-frequent gene_rpkm_report 2 (# (# FBgn0053410 166) (# FBgn0053411 166) (# FBgn0053412 166) (# FBgn0053413 166) (# FBgn0053414 166) (# FBgn0053408 166) (# FBgn0038694 166)))
(less-frequent gene_rpkm_report 2 (# (# FBgn0267595 40) (# FBgn0013691 42) (# FBgn0013673 42) (# FBgn0013701 42) (# FBgn0013700 42) (# FBgn0013674 42) (# FBgn0013675 42)))
(most-frequent gene_rpkm_report 3 (# (# "5SrRNA:CR33410" 166) (# "5SrRNA:CR33411" 166) (# "5SrRNA:CR33412" 166) (# "5SrRNA:CR33413" 166) (# "5SrRNA:CR33414" 166) (# "5SrRNA:CR33408" 166) (# CG5217 166)))
(less-frequent gene_rpkm_report 3 (# (# CR45933 40) (# "mt:tRNA:Asp-GTC" 42) (# "mt:ATPase8" 42) (# "mt:tRNA:Asn-GTT" 42) (# "mt:tRNA:Met-CAT" 42) (# "mt:CoI" 42) (# "mt:CoII" 42)))
(most-frequent gene_rpkm_report 4 (# (# FBlc0003342 35368) (# FBlc0000060 211421) (# FBlc0000260 424996) (# FBlc0000236 477917) (# FBlc0000206 513566) (# FBlc0000085 528553) (# FBlc0003498 736890)))
(less-frequent gene_rpkm_report 4 (# (# FBlc0003342 35368) (# FBlc0000060 211421) (# FBlc0000260 424996) (# FBlc0000236 477917) (# FBlc0000206 513566) (# FBlc0000085 528553) (# FBlc0003498 736890)))
(most-frequent gene_rpkm_report 5 (# (# "Knoblich_Neural_Cell_RNA-Seq" 35368) (# "BCM_1_RNAseq" 211421) (# "modENCODE_mRNA-Seq_cell.B" 424996) (# "modENCODE_mRNA-Seq_treatments" 477917) (# "modENCODE_mRNA-Seq_tissues" 513566) (# "modENCODE_mRNA-Seq_development" 528553) (# FlyAtlas2 736890)))
(less-frequent gene_rpkm_report 5 (# (# "Knoblich_Neural_Cell_RNA-Seq" 35368) (# "BCM_1_RNAseq" 211421) (# "modENCODE_mRNA-Seq_cell.B" 424996) (# "modENCODE_mRNA-Seq_treatments" 477917) (# "modENCODE_mRNA-Seq_tissues" 513566) (# "modENCODE_mRNA-Seq_development" 528553) (# FlyAtlas2 736890)))
(most-frequent gene_rpkm_report 6 (# (# FBlc0000235 17711) (# FBlc0000234 17711) (# FBlc0000233 17711) (# FBlc0000229 17711) (# FBlc0000217 17711) (# FBlc0000251 17711) (# FBlc0000250 17711)))
(less-frequent gene_rpkm_report 6 (# (# FBlc0003639 17545) (# FBlc0003637 17545) (# FBlc0003636 17545) (# FBlc0003635 17545) (# FBlc0003634 17545) (# FBlc0003633 17545) (# FBlc0003632 17545)))