#calculate-correlation --> 'DataFrame' object has no attribute 'to_dense' #Plugin Error

[AlinJulia]

Hello @shafferm and @Nicholas_Bokulich,

Thank you so much for developing this package. I successfully installed in qiime2-2020.11 environment and I filtered my features table as you described in the SCNIC workflow.

I'm now stuck at the point 2. Calculating correlations and making your network.
Once I run the code:

qiime SCNIC calculate-correlations
--i-table rarefied_table_filtered.qza
--p-method sparcc
--o-correlation-table rarefied_correls.qza

I got this error:

Plugin error from SCNIC:

'DataFrame' object has no attribute 'to_dense'

Debug info has been saved to /tmp/qiime2-q2cli-err-un4tp3mu.log

How can I fix it?

Thank you!

[timyerg]

Hello, I have the same issue both with SCNIC and q2-SCNIC.
Any updates?

[timyerg]

For me worked #13 (comment)