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FutureWarning: The squeeze argument has been deprecated #17

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ARW-UBT opened this issue Feb 22, 2024 · 0 comments
Open

FutureWarning: The squeeze argument has been deprecated #17

ARW-UBT opened this issue Feb 22, 2024 · 0 comments

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@ARW-UBT
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ARW-UBT commented Feb 22, 2024

Hi,
I get these FurtureWarnings when running the qiime metadata tabulate command:
I am unsure whether this is related to the most recent q2 release or to q2_SCNIC plugin.
Luckily, it is only a warning at the moment, but I would like to post it here for future updates.
Best,

/path/to/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/q2_SCNIC/_format.py:57: FutureWarning: The squeeze argument has been deprecated and will be removed in a future version. Append .squeeze("columns") to the call to squeeze.


  series = pd.read_table(self.path, header=None, squeeze=True, nrows=nrows, index_col=0)
/path/to/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/q2_SCNIC/_format.py:57: FutureWarning: The squeeze argument has been deprecated and will be removed in a future version. Append .squeeze("columns") to the call to squeeze.


  series = pd.read_table(self.path, header=None, squeeze=True, nrows=nrows, index_col=0)
/path/to/miniconda3/envs/qiime2-amplicon-2024.2/lib/python3.8/site-packages/q2_SCNIC/_format.py:57: FutureWarning: The squeeze argument has been deprecated and will be removed in a future version. Append .squeeze("columns") to the call to squeeze.


  series = pd.read_table(self.path, header=None, squeeze=True, nrows=nrows, index_col=0)
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