Example1.bngl

###
#@notes:'This is a plain translation of an SBML model created on 12/01/2016. The original model has 2 molecules and 1 reactions. The translated model has 2 molecules and 1 rules'
###
begin model
begin parameters
end parameters
begin compartments
	default_compartment  3  1.0
end compartments
begin molecule types
	A()
	D()
end molecule types
begin seed species
	@default_compartment:A() 100.0 #A #A
end seed species
begin observables
	Species A A() #A
	Species D D() #D
end observables
begin functions
	functionRate0() = if(0.05>= 0,0.05,0)
	functionRate0m() = if(if(D>0,A * 0.05/D,0)< 0,-(if(D>0,A * 0.05/D,0)),0)
end functions
begin reaction rules
	J0: A() <-> D() functionRate0(),functionRate0m()
end reaction rules
end model

# The following lines were manually added after translation to execute the model
generate_network({overwrite=>1})
simulate({method=>"ssa", t_end=>10, n_steps=>10, verbose=>1, seed=>0})