From 319cb61bf56a1d8ed5cd7adb370dd2f77a93faa9 Mon Sep 17 00:00:00 2001 From: hirosassa Date: Sat, 18 Sep 2021 13:57:05 +0900 Subject: [PATCH 1/8] move tf dependency to dev dep --- README.md | 6 + poetry.lock | 1445 +++++++++-------- pyproject.toml | 6 +- ...te_similarity_with_matrix_factorization.py | 7 +- redshells/model/__init__.py | 2 +- redshells/model/early_stopping.py | 8 +- redshells/model/factorization_machine.py | 6 +- .../feature_aggregation_similarity_model.py | 6 + .../graph_convolutional_matrix_completion.py | 6 +- redshells/model/matrix_factorization_model.py | 6 +- redshells/model/{tdidf.py => tfidf.py} | 0 redshells/model/utils.py | 6 +- ...n_graph_convolutional_matrix_completion.py | 9 +- redshells/train/train_matrix_factorization.py | 12 +- yapf.ini | 3 - 15 files changed, 855 insertions(+), 673 deletions(-) rename redshells/model/{tdidf.py => tfidf.py} (100%) delete mode 100644 yapf.ini diff --git a/README.md b/README.md index 7ef5f63..0816910 100644 --- a/README.md +++ b/README.md @@ -6,3 +6,9 @@ ![](https://img.shields.io/pypi/l/redshells) Machine learning tasks which are used with data pipeline library "luigi" and its wrapper "gokart". + +## Dependencies + +You should install `tensorflow = ">=1.13.1,<2.0"` manually if you would like to use some models. +`Tensorflow` is not included redshells' dependencies because there are models not used it. +For more details, see `redshells/model` directory. diff --git a/poetry.lock b/poetry.lock index 7198a0c..a0d124f 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,8 +1,8 @@ [[package]] name = "absl-py" -version = "0.12.0" +version = "0.13.0" description = "Abseil Python Common Libraries, see https://github.com/abseil/abseil-py." -category = "main" +category = "dev" optional = false python-versions = "*" @@ -11,25 +11,20 @@ six = "*" [[package]] name = "alembic" -version = "1.5.8" +version = "1.7.3" description = "A database migration tool for SQLAlchemy." category = "main" optional = false -python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7" +python-versions = ">=3.6" [package.dependencies] +importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} +importlib-resources = {version = "*", markers = "python_version < \"3.9\""} Mako = "*" -python-dateutil = "*" -python-editor = ">=0.3" SQLAlchemy = ">=1.3.0" -[[package]] -name = "appdirs" -version = "1.4.4" -description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." -category = "dev" -optional = false -python-versions = "*" +[package.extras] +tz = ["python-dateutil"] [[package]] name = "apscheduler" @@ -61,44 +56,70 @@ zookeeper = ["kazoo"] name = "astor" version = "0.8.1" description = "Read/rewrite/write Python ASTs" -category = "main" +category = "dev" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,>=2.7" [[package]] name = "attrs" -version = "20.3.0" +version = "21.2.0" description = "Classes Without Boilerplate" category = "main" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" + +[package.extras] +dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit"] +docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"] +tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface"] +tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins"] + +[[package]] +name = "autopage" +version = "0.4.0" +description = "A library to provide automatic paging for console output" +category = "main" +optional = false +python-versions = ">=3.6" + +[[package]] +name = "backports.entry-points-selectable" +version = "1.1.0" +description = "Compatibility shim providing selectable entry points for older implementations" +category = "dev" +optional = false +python-versions = ">=2.7" + +[package.dependencies] +importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} [package.extras] -dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface", "furo", "sphinx", "pre-commit"] -docs = ["furo", "sphinx", "zope.interface"] -tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface"] -tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six"] +docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"] +testing = ["pytest (>=4.6)", "pytest-flake8", "pytest-cov", "pytest-black (>=0.3.7)", "pytest-mypy", "pytest-checkdocs (>=2.4)", "pytest-enabler (>=1.0.1)"] [[package]] name = "boto3" -version = "1.17.45" +version = "1.18.44" description = "The AWS SDK for Python" category = "main" optional = false -python-versions = ">= 2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" +python-versions = ">= 3.6" [package.dependencies] -botocore = ">=1.20.45,<1.21.0" +botocore = ">=1.21.44,<1.22.0" jmespath = ">=0.7.1,<1.0.0" -s3transfer = ">=0.3.0,<0.4.0" +s3transfer = ">=0.5.0,<0.6.0" + +[package.extras] +crt = ["botocore[crt] (>=1.21.0,<2.0a0)"] [[package]] name = "botocore" -version = "1.20.45" +version = "1.21.44" description = "Low-level, data-driven core of boto 3." category = "main" optional = false -python-versions = ">= 2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" +python-versions = ">= 3.6" [package.dependencies] jmespath = ">=0.7.1,<1.0.0" @@ -106,11 +127,11 @@ python-dateutil = ">=2.1,<3.0.0" urllib3 = ">=1.25.4,<1.27" [package.extras] -crt = ["awscrt (==0.10.8)"] +crt = ["awscrt (==0.11.24)"] [[package]] name = "cachetools" -version = "4.2.1" +version = "4.2.2" description = "Extensible memoizing collections and decorators" category = "main" optional = false @@ -118,7 +139,7 @@ python-versions = "~=3.5" [[package]] name = "certifi" -version = "2020.12.5" +version = "2021.5.30" description = "Python package for providing Mozilla's CA Bundle." category = "main" optional = false @@ -126,7 +147,7 @@ python-versions = "*" [[package]] name = "cffi" -version = "1.14.5" +version = "1.14.6" description = "Foreign Function Interface for Python calling C code." category = "dev" optional = false @@ -136,22 +157,26 @@ python-versions = "*" pycparser = "*" [[package]] -name = "chardet" -version = "4.0.0" -description = "Universal encoding detector for Python 2 and 3" +name = "charset-normalizer" +version = "2.0.6" +description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." category = "main" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +python-versions = ">=3.5.0" + +[package.extras] +unicode_backport = ["unicodedata2"] [[package]] name = "cliff" -version = "3.7.0" +version = "3.9.0" description = "Command Line Interface Formulation Framework" category = "main" optional = false python-versions = ">=3.6" [package.dependencies] +autopage = ">=0.4.0" cmd2 = ">=1.0.0" pbr = ">=2.0.0,<2.1.0 || >2.1.0" PrettyTable = ">=0.7.2" @@ -159,6 +184,14 @@ pyparsing = ">=2.1.0" PyYAML = ">=3.12" stevedore = ">=2.0.1" +[[package]] +name = "cloudpickle" +version = "2.0.0" +description = "Extended pickling support for Python objects" +category = "main" +optional = false +python-versions = ">=3.6" + [[package]] name = "cmaes" version = "0.8.2" @@ -172,11 +205,11 @@ numpy = "*" [[package]] name = "cmd2" -version = "1.5.0" +version = "2.2.0" description = "cmd2 - quickly build feature-rich and user-friendly interactive command line applications in Python" category = "main" optional = false -python-versions = ">=3.5" +python-versions = ">=3.6" [package.dependencies] attrs = ">=16.3.0" @@ -185,11 +218,13 @@ importlib-metadata = {version = ">=1.6.0", markers = "python_version < \"3.8\""} pyperclip = ">=1.6" pyreadline = {version = "*", markers = "sys_platform == \"win32\" and python_version < \"3.8\""} pyreadline3 = {version = "*", markers = "sys_platform == \"win32\" and python_version >= \"3.8\""} +typing-extensions = {version = "*", markers = "python_version < \"3.8\""} wcwidth = ">=0.1.7" [package.extras] -dev = ["pytest (>=4.6)", "codecov", "pytest-cov", "pytest-mock", "flake8", "sphinx", "sphinx-rtd-theme", "sphinx-autobuild", "doc8", "invoke", "twine (>=1.11)", "mock", "nox (==2019.11.9)", "nox"] -test = ["codecov", "coverage", "pytest (>=4.6)", "pytest-cov", "pytest-mock", "mock", "gnureadline"] +dev = ["codecov", "doc8", "flake8", "invoke", "mypy (==0.902)", "nox", "pytest (>=4.6)", "pytest-cov", "pytest-mock", "sphinx", "sphinx-rtd-theme", "sphinx-autobuild", "twine (>=1.11)"] +test = ["codecov", "coverage", "pytest (>=4.6)", "pytest-cov", "pytest-mock", "gnureadline"] +validate = ["flake8", "mypy (==0.902)", "types-pkg-resources"] [[package]] name = "colorama" @@ -201,15 +236,18 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [[package]] name = "colorlog" -version = "4.8.0" -description = "Log formatting with colors!" +version = "6.4.1" +description = "Add colours to the output of Python's logging module." category = "main" optional = false -python-versions = "*" +python-versions = ">=3.6" [package.dependencies] colorama = {version = "*", markers = "sys_platform == \"win32\""} +[package.extras] +development = ["black", "flake8", "mypy", "pytest", "types-colorama"] + [[package]] name = "coverage" version = "5.5" @@ -223,7 +261,7 @@ toml = ["toml"] [[package]] name = "cryptography" -version = "3.4.7" +version = "3.4.8" description = "cryptography is a package which provides cryptographic recipes and primitives to Python developers." category = "dev" optional = false @@ -261,7 +299,7 @@ python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" [[package]] name = "distlib" -version = "0.3.1" +version = "0.3.2" description = "Distribution utilities" category = "dev" optional = false @@ -287,7 +325,7 @@ python-versions = "*" name = "gast" version = "0.2.2" description = "Python AST that abstracts the underlying Python version" -category = "main" +category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" @@ -308,14 +346,14 @@ smart-open = ">=1.8.1" [package.extras] distributed = ["Pyro4 (>=4.27)"] -docs = ["pytest", "pytest-rerunfailures", "mock", "cython", "nmslib", "pyemd", "testfixtures", "Morfessor (==2.0.2a4)", "python-Levenshtein (>=0.10.2)", "visdom (>=0.1.8,!=0.1.8.7)", "scikit-learn", "Pyro4 (>=4.27)", "sphinx (<=2.4.4)", "sphinx-gallery", "sphinxcontrib.programoutput", "sphinxcontrib-napoleon", "matplotlib", "plotly", "memory-profiler", "annoy", "pyro4", "nltk", "statsmodels", "pandas"] -test = ["pytest", "pytest-rerunfailures", "mock", "cython", "nmslib", "pyemd", "testfixtures", "Morfessor (==2.0.2a4)", "python-Levenshtein (>=0.10.2)", "visdom (>=0.1.8,!=0.1.8.7)", "scikit-learn"] -test-win = ["pytest", "pytest-rerunfailures", "mock", "cython", "nmslib", "pyemd", "testfixtures", "Morfessor (==2.0.2a4)", "python-Levenshtein (>=0.10.2)", "visdom (>=0.1.8,!=0.1.8.7)", "scikit-learn"] +docs = ["pytest", "pytest-rerunfailures", "mock", "cython", "nmslib", "pyemd", "testfixtures", "Morfessor (==2.0.2a4)", "python-Levenshtein (>=0.10.2)", "visdom (>0.1.8.7)", "scikit-learn", "Pyro4 (>=4.27)", "sphinx (<=2.4.4)", "sphinx-gallery", "sphinxcontrib.programoutput", "sphinxcontrib-napoleon", "matplotlib", "plotly", "memory-profiler", "annoy", "pyro4", "nltk", "statsmodels", "pandas"] +test = ["pytest", "pytest-rerunfailures", "mock", "cython", "nmslib", "pyemd", "testfixtures", "Morfessor (==2.0.2a4)", "python-Levenshtein (>=0.10.2)", "visdom (>0.1.8.7)", "scikit-learn"] +test-win = ["pytest", "pytest-rerunfailures", "mock", "cython", "nmslib", "pyemd", "testfixtures", "Morfessor (==2.0.2a4)", "python-Levenshtein (>=0.10.2)", "visdom (>0.1.8.7)", "scikit-learn"] [[package]] name = "gokart" -version = "0.3.28" -description = "A wrapper of luigi. This make it easy to define tasks." +version = "1.0.1" +description = "Gokart solves reproducibility, task dependencies, constraints of good code, and ease of use for Machine Learning Pipeline. [Documentation](https://gokart.readthedocs.io/en/latest/)" category = "main" optional = false python-versions = ">=3.7,<4.0" @@ -323,6 +361,7 @@ python-versions = ">=3.7,<4.0" [package.dependencies] APScheduler = "*" boto3 = "*" +cloudpickle = "*" google-api-python-client = "*" google-auth = "*" luigi = "*" @@ -337,59 +376,55 @@ uritemplate = "*" [[package]] name = "google-api-core" -version = "1.26.3" +version = "2.0.1" description = "Google API client core library" category = "main" optional = false -python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*" +python-versions = ">=3.6" [package.dependencies] -google-auth = ">=1.21.1,<2.0dev" +google-auth = ">=1.25.0,<3.0dev" googleapis-common-protos = ">=1.6.0,<2.0dev" -packaging = ">=14.3" protobuf = ">=3.12.0" -pytz = "*" requests = ">=2.18.0,<3.0.0dev" -six = ">=1.13.0" [package.extras] -grpc = ["grpcio (>=1.29.0,<2.0dev)"] +grpc = ["grpcio (>=1.33.2,<2.0dev)"] grpcgcp = ["grpcio-gcp (>=0.2.2)"] grpcio-gcp = ["grpcio-gcp (>=0.2.2)"] [[package]] name = "google-api-python-client" -version = "2.1.0" +version = "2.21.0" description = "Google API Client Library for Python" category = "main" optional = false python-versions = ">=3.6" [package.dependencies] -google-api-core = ">=1.21.0,<2dev" -google-auth = ">=1.16.0,<2dev" +google-api-core = ">=1.21.0,<3.0.0dev" +google-auth = ">=1.16.0,<3.0.0dev" google-auth-httplib2 = ">=0.1.0" httplib2 = ">=0.15.0,<1dev" -six = ">=1.13.0,<2dev" uritemplate = ">=3.0.0,<4dev" [[package]] name = "google-auth" -version = "1.28.0" +version = "2.1.0" description = "Google Authentication Library" category = "main" optional = false -python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*" +python-versions = ">= 3.6" [package.dependencies] cachetools = ">=2.0.0,<5.0" pyasn1-modules = ">=0.2.1" -rsa = {version = ">=3.1.4,<5", markers = "python_version >= \"3.6\""} -six = ">=1.9.0" +rsa = ">=3.1.4,<5" [package.extras] -aiohttp = ["aiohttp (>=3.6.2,<4.0.0dev)"] +aiohttp = ["aiohttp (>=3.6.2,<4.0.0dev)", "requests (>=2.20.0,<3.0.0dev)"] pyopenssl = ["pyopenssl (>=20.0.0)"] +reauth = ["pyu2f (>=0.1.5)"] [[package]] name = "google-auth-httplib2" @@ -408,7 +443,7 @@ six = "*" name = "google-pasta" version = "0.2.0" description = "pasta is an AST-based Python refactoring library" -category = "main" +category = "dev" optional = false python-versions = "*" @@ -431,7 +466,7 @@ grpc = ["grpcio (>=1.0.0)"] [[package]] name = "greenlet" -version = "1.0.0" +version = "1.1.1" description = "Lightweight in-process concurrent programming" category = "main" optional = false @@ -442,9 +477,9 @@ docs = ["sphinx"] [[package]] name = "grpcio" -version = "1.36.1" +version = "1.40.0" description = "HTTP/2-based RPC framework" -category = "main" +category = "dev" optional = false python-versions = "*" @@ -452,13 +487,13 @@ python-versions = "*" six = ">=1.5.2" [package.extras] -protobuf = ["grpcio-tools (>=1.36.1)"] +protobuf = ["grpcio-tools (>=1.40.0)"] [[package]] name = "h5py" version = "2.10.0" description = "Read and write HDF5 files from Python" -category = "main" +category = "dev" optional = false python-versions = "*" @@ -479,15 +514,15 @@ pyparsing = ">=2.4.2,<3" [[package]] name = "idna" -version = "2.10" +version = "3.2" description = "Internationalized Domain Names in Applications (IDNA)" category = "main" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +python-versions = ">=3.5" [[package]] name = "importlib-metadata" -version = "3.10.0" +version = "4.8.1" description = "Read metadata from Python packages" category = "main" optional = false @@ -499,21 +534,37 @@ zipp = ">=0.5" [package.extras] docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"] -testing = ["pytest (>=4.6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pep517", "pyfakefs", "flufl.flake8", "pytest-black (>=0.3.7)", "pytest-mypy", "importlib-resources (>=1.3)"] +perf = ["ipython"] +testing = ["pytest (>=4.6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pep517", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy", "importlib-resources (>=1.3)"] + +[[package]] +name = "importlib-resources" +version = "5.2.2" +description = "Read resources from Python packages" +category = "main" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""} + +[package.extras] +docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"] +testing = ["pytest (>=4.6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "pytest-black (>=0.3.7)", "pytest-mypy"] [[package]] name = "jinja2" -version = "2.11.3" +version = "3.0.1" description = "A very fast and expressive template engine." category = "dev" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +python-versions = ">=3.6" [package.dependencies] -MarkupSafe = ">=0.23" +MarkupSafe = ">=2.0" [package.extras] -i18n = ["Babel (>=0.8)"] +i18n = ["Babel (>=2.7)"] [[package]] name = "jmespath" @@ -535,7 +586,7 @@ python-versions = ">=3.6" name = "keras-applications" version = "1.0.8" description = "Reference implementations of popular deep learning models" -category = "main" +category = "dev" optional = false python-versions = "*" @@ -550,7 +601,7 @@ tests = ["pytest", "pytest-pep8", "pytest-xdist", "pytest-cov"] name = "keras-preprocessing" version = "1.1.2" description = "Easy data preprocessing and data augmentation for deep learning models" -category = "main" +category = "dev" optional = false python-versions = "*" @@ -565,11 +616,11 @@ tests = ["pandas", "pillow", "tensorflow", "keras", "pytest", "pytest-xdist", "p [[package]] name = "kiwisolver" -version = "1.3.1" +version = "1.3.2" description = "A fast implementation of the Cassowary constraint solver" category = "main" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [[package]] name = "lockfile" @@ -581,7 +632,7 @@ python-versions = "*" [[package]] name = "luigi" -version = "3.0.2" +version = "3.0.3" description = "Workflow mgmgt + task scheduling + dependency resolution." category = "main" optional = false @@ -590,6 +641,7 @@ python-versions = "*" [package.dependencies] python-daemon = "*" python-dateutil = ">=2.7.5,<3" +tenacity = ">=6.3.0,<7" tornado = ">=5.0,<7" [package.extras] @@ -598,7 +650,7 @@ toml = ["toml (<2.0.0)"] [[package]] name = "mako" -version = "1.1.4" +version = "1.1.5" description = "A super-fast templating language that borrows the best ideas from the existing templating languages." category = "main" optional = false @@ -615,7 +667,7 @@ lingua = ["lingua"] name = "markdown" version = "3.3.4" description = "Python implementation of Markdown." -category = "main" +category = "dev" optional = false python-versions = ">=3.6" @@ -627,15 +679,15 @@ testing = ["coverage", "pyyaml"] [[package]] name = "markupsafe" -version = "1.1.1" +version = "2.0.1" description = "Safely add untrusted strings to HTML/XML markup." category = "main" optional = false -python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*" +python-versions = ">=3.6" [[package]] name = "matplotlib" -version = "3.4.1" +version = "3.4.3" description = "Python plotting package" category = "main" optional = false @@ -649,22 +701,9 @@ pillow = ">=6.2.0" pyparsing = ">=2.2.1" python-dateutil = ">=2.7" -[[package]] -name = "mock" -version = "4.0.3" -description = "Rolling backport of unittest.mock for all Pythons" -category = "dev" -optional = false -python-versions = ">=3.6" - -[package.extras] -build = ["twine", "wheel", "blurb"] -docs = ["sphinx"] -test = ["pytest (<5.4)", "pytest-cov"] - [[package]] name = "more-itertools" -version = "8.7.0" +version = "8.10.0" description = "More routines for operating on iterables, beyond itertools" category = "dev" optional = false @@ -672,7 +711,7 @@ python-versions = ">=3.5" [[package]] name = "moto" -version = "2.0.4" +version = "2.2.7" description = "A library that allows your python tests to easily mock out the boto library" category = "dev" optional = false @@ -682,21 +721,19 @@ python-versions = "*" boto3 = ">=1.9.201" botocore = ">=1.12.201" cryptography = ">=3.3.1" +importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} Jinja2 = ">=2.10.1" -MarkupSafe = "<2.0" -mock = "*" +MarkupSafe = "!=2.0.0a1" more-itertools = "*" python-dateutil = ">=2.1,<3.0.0" pytz = "*" requests = ">=2.5" responses = ">=0.9.0" -six = ">1.9" werkzeug = "*" xmltodict = "*" -zipp = "*" [package.extras] -all = ["PyYAML (>=5.1)", "python-jose[cryptography] (>=3.1.0,<4.0.0)", "ecdsa (<0.15)", "docker (>=2.5.1)", "jsondiff (>=1.1.2)", "aws-xray-sdk (>=0.93,!=0.96)", "idna (>=2.5,<3)", "cfn-lint (>=0.4.0)", "sshpubkeys (==3.1.0)", "sshpubkeys (>=3.1.0)"] +all = ["PyYAML (>=5.1)", "python-jose[cryptography] (>=3.1.0,<4.0.0)", "ecdsa (<0.15)", "docker (>=2.5.1)", "jsondiff (>=1.1.2)", "aws-xray-sdk (>=0.93,!=0.96)", "idna (>=2.5,<3)", "cfn-lint (>=0.4.0)", "sshpubkeys (>=3.1.0)", "setuptools"] apigateway = ["python-jose[cryptography] (>=3.1.0,<4.0.0)", "ecdsa (<0.15)"] awslambda = ["docker (>=2.5.1)"] batch = ["docker (>=2.5.1)"] @@ -704,15 +741,13 @@ cloudformation = ["docker (>=2.5.1)", "PyYAML (>=5.1)", "cfn-lint (>=0.4.0)"] cognitoidp = ["python-jose[cryptography] (>=3.1.0,<4.0.0)", "ecdsa (<0.15)"] dynamodb2 = ["docker (>=2.5.1)"] dynamodbstreams = ["docker (>=2.5.1)"] -ec2 = ["docker (>=2.5.1)", "sshpubkeys (==3.1.0)", "sshpubkeys (>=3.1.0)"] +ec2 = ["sshpubkeys (>=3.1.0)"] +efs = ["sshpubkeys (>=3.1.0)"] iotdata = ["jsondiff (>=1.1.2)"] s3 = ["PyYAML (>=5.1)"] -server = ["PyYAML (>=5.1)", "python-jose[cryptography] (>=3.1.0,<4.0.0)", "ecdsa (<0.15)", "docker (>=2.5.1)", "jsondiff (>=1.1.2)", "aws-xray-sdk (>=0.93,!=0.96)", "idna (>=2.5,<3)", "cfn-lint (>=0.4.0)", "flask", "flask-cors", "sshpubkeys (==3.1.0)", "sshpubkeys (>=3.1.0)"] -ses = ["docker (>=2.5.1)"] -sns = ["docker (>=2.5.1)"] -sqs = ["docker (>=2.5.1)"] -ssm = ["docker (>=2.5.1)", "PyYAML (>=5.1)", "cfn-lint (>=0.4.0)"] -xray = ["aws-xray-sdk (>=0.93,!=0.96)"] +server = ["PyYAML (>=5.1)", "python-jose[cryptography] (>=3.1.0,<4.0.0)", "ecdsa (<0.15)", "docker (>=2.5.1)", "jsondiff (>=1.1.2)", "aws-xray-sdk (>=0.93,!=0.96)", "idna (>=2.5,<3)", "cfn-lint (>=0.4.0)", "sshpubkeys (>=3.1.0)", "setuptools", "flask", "flask-cors"] +ssm = ["PyYAML (>=5.1)"] +xray = ["aws-xray-sdk (>=0.93,!=0.96)", "setuptools"] [[package]] name = "numpy" @@ -726,7 +761,7 @@ python-versions = ">=3.5" name = "opt-einsum" version = "3.3.0" description = "Optimizing numpys einsum function" -category = "main" +category = "dev" optional = false python-versions = ">=3.5" @@ -739,7 +774,7 @@ tests = ["pytest", "pytest-cov", "pytest-pep8"] [[package]] name = "optuna" -version = "2.7.0" +version = "2.9.1" description = "A hyperparameter optimization framework" category = "main" optional = false @@ -752,29 +787,30 @@ cmaes = ">=0.8.2" colorlog = "*" numpy = "*" packaging = ">=20.0" +PyYAML = "*" scipy = "!=1.4.0" sqlalchemy = ">=1.1.0" tqdm = "*" [package.extras] +benchmark = ["asv", "virtualenv"] checking = ["black", "hacking", "isort", "mypy (==0.790)", "blackdoc"] codecov = ["codecov", "pytest-cov"] -doctest = ["cma", "matplotlib (>=3.0.0)", "pandas", "plotly (>=4.0.0)", "scikit-learn (>=0.19.0,<0.23.0)", "scikit-optimize", "mlflow"] -document = ["sphinx", "sphinx-rtd-theme", "sphinx-copybutton", "sphinx-gallery", "sphinx-plotly-directive", "pillow", "matplotlib", "scikit-learn", "plotly (>=4.0.0)", "pandas", "lightgbm", "torch (==1.8.0)", "torchvision (==0.9.0)", "torchaudio (==0.8.0)", "thop"] -example = ["catboost", "chainer", "lightgbm", "mlflow", "mpi4py", "mxnet", "nbval", "scikit-image", "scikit-learn (>=0.19.0,<0.23.0)", "xgboost", "keras", "tensorflow (>=2.0.0)", "tensorflow-datasets", "pytorch-ignite", "pytorch-lightning (>=1.0.2)", "thop", "skorch", "stable-baselines3 (>=0.7.0)", "catalyst (>=21.3)", "torchaudio (==0.8.0)", "allennlp (>=2.2.0)", "dask", "dask-ml", "fastai", "optax", "dm-haiku", "hydra-optuna-sweeper", "ray", "botorch (>=0.4.0)", "torch (==1.8.0+cpu)", "torchvision (==0.9.0+cpu)", "torch (==1.8.0)", "torchvision (==0.9.0)"] +doctest = ["cma", "matplotlib (>=3.0.0)", "pandas", "plotly (>=4.0.0)", "scikit-learn (>=0.24.2)", "scikit-optimize", "mlflow"] +document = ["sphinx (<4.0.0)", "sphinx-rtd-theme", "sphinx-copybutton", "sphinx-gallery", "sphinx-plotly-directive", "pillow", "matplotlib", "scikit-learn", "plotly (>=4.0.0)", "pandas", "lightgbm", "torch (==1.8.0)", "torchvision (==0.9.0)", "torchaudio (==0.8.0)", "thop"] experimental = ["redis"] -integration = ["chainer (>=5.0.0)", "cma", "lightgbm", "mlflow", "mpi4py", "mxnet", "pandas", "scikit-learn (>=0.19.0,<0.23.0)", "scikit-optimize", "xgboost", "keras", "tensorflow", "tensorflow-datasets", "pytorch-ignite", "pytorch-lightning (>=1.0.2)", "skorch", "catalyst (>=21.3)", "torchaudio (==0.8.0)", "allennlp (>=2.2.0)", "fastai", "botorch (>=0.4.0)", "torch (==1.8.0+cpu)", "torchvision (==0.9.0+cpu)", "torch (==1.8.0)", "torchvision (==0.9.0)"] -optional = ["bokeh (<2.0.0)", "matplotlib (>=3.0.0)", "pandas", "plotly (>=4.0.0)", "redis", "scikit-learn (>=0.19.0,<0.23.0)"] -testing = ["bokeh (<2.0.0)", "chainer (>=5.0.0)", "cma", "fakeredis", "lightgbm", "matplotlib (>=3.0.0)", "mlflow", "mpi4py", "mxnet", "pandas", "plotly (>=4.0.0)", "pytest", "scikit-learn (>=0.19.0,<0.23.0)", "scikit-optimize", "xgboost", "keras", "tensorflow", "tensorflow-datasets", "pytorch-ignite", "pytorch-lightning (>=1.0.2)", "skorch", "catalyst (>=21.3)", "torchaudio (==0.8.0)", "allennlp (>=2.2.0)", "fastai", "botorch (>=0.4.0)", "torch (==1.8.0+cpu)", "torchvision (==0.9.0+cpu)", "torch (==1.8.0)", "torchvision (==0.9.0)"] +integration = ["chainer (>=5.0.0)", "cma", "lightgbm", "mlflow", "wandb", "mpi4py", "mxnet", "pandas", "scikit-learn (>=0.24.2)", "scikit-optimize", "xgboost", "pytorch-ignite", "pytorch-lightning (>=1.0.2)", "skorch", "catalyst (>=21.3)", "torchaudio (==0.8.0)", "allennlp (>=2.2.0)", "fastai", "keras", "tensorflow (<2.5.0)", "tensorflow-datasets", "botorch (>=0.4.0)", "torch (==1.8.0+cpu)", "torchvision (==0.9.0+cpu)", "torch (==1.8.0)", "torchvision (==0.9.0)"] +optional = ["bokeh (<2.0.0)", "matplotlib (>=3.0.0)", "pandas", "plotly (>=4.0.0)", "redis", "scikit-learn (>=0.24.2)"] +testing = ["bokeh (<2.0.0)", "chainer (>=5.0.0)", "cma", "fakeredis", "lightgbm", "matplotlib (>=3.0.0)", "mlflow", "mpi4py", "mxnet", "pandas", "plotly (>=4.0.0)", "pytest", "scikit-learn (>=0.24.2)", "scikit-optimize", "xgboost", "keras", "tensorflow-datasets", "pytorch-ignite", "pytorch-lightning (>=1.0.2)", "skorch", "catalyst (>=21.3)", "torchaudio (==0.8.0)", "allennlp (>=2.2.0)", "fastai", "tensorflow (<2.5.0)", "botorch (>=0.4.0)", "torch (==1.8.0+cpu)", "torchvision (==0.9.0+cpu)", "torch (==1.8.0)", "torchvision (==0.9.0)"] tests = ["fakeredis", "pytest"] [[package]] name = "packaging" -version = "20.9" +version = "21.0" description = "Core utilities for Python packages" category = "main" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +python-versions = ">=3.6" [package.dependencies] pyparsing = ">=2.0.2" @@ -797,7 +833,7 @@ test = ["pytest (>=4.0.2)", "pytest-xdist", "hypothesis (>=3.58)"] [[package]] name = "pbr" -version = "5.5.1" +version = "5.6.0" description = "Python Build Reasonableness" category = "main" optional = false @@ -805,29 +841,42 @@ python-versions = ">=2.6" [[package]] name = "pillow" -version = "8.2.0" +version = "8.3.2" description = "Python Imaging Library (Fork)" category = "main" optional = false python-versions = ">=3.6" +[[package]] +name = "platformdirs" +version = "2.3.0" +description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." +category = "dev" +optional = false +python-versions = ">=3.6" + +[package.extras] +docs = ["Sphinx (>=4)", "furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx-autodoc-typehints (>=1.12)"] +test = ["appdirs (==1.4.4)", "pytest (>=6)", "pytest-cov (>=2.7)", "pytest-mock (>=3.6)"] + [[package]] name = "pluggy" -version = "0.13.1" +version = "1.0.0" description = "plugin and hook calling mechanisms for python" category = "dev" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" +python-versions = ">=3.6" [package.dependencies] importlib-metadata = {version = ">=0.12", markers = "python_version < \"3.8\""} [package.extras] dev = ["pre-commit", "tox"] +testing = ["pytest", "pytest-benchmark"] [[package]] name = "prettytable" -version = "2.1.0" +version = "2.2.0" description = "A simple Python library for easily displaying tabular data in a visually appealing ASCII table format" category = "main" optional = false @@ -842,15 +891,12 @@ tests = ["pytest", "pytest-cov"] [[package]] name = "protobuf" -version = "3.15.7" +version = "3.18.0" description = "Protocol Buffers" category = "main" optional = false python-versions = "*" -[package.dependencies] -six = ">=1.9" - [[package]] name = "py" version = "1.10.0" @@ -861,7 +907,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [[package]] name = "pyarrow" -version = "3.0.0" +version = "5.0.0" description = "Python library for Apache Arrow" category = "main" optional = false @@ -946,7 +992,7 @@ test = ["coverage", "docutils", "testscenarios (>=0.4)", "testtools"] [[package]] name = "python-dateutil" -version = "2.8.1" +version = "2.8.2" description = "Extensions to the standard Python datetime module" category = "main" optional = false @@ -955,14 +1001,6 @@ python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7" [package.dependencies] six = ">=1.5" -[[package]] -name = "python-editor" -version = "1.0.4" -description = "Programmatically open an editor, capture the result." -category = "main" -optional = false -python-versions = "*" - [[package]] name = "pytz" version = "2021.1" @@ -992,25 +1030,25 @@ hiredis = ["hiredis (>=0.1.3)"] [[package]] name = "requests" -version = "2.25.1" +version = "2.26.0" description = "Python HTTP for Humans." category = "main" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*" [package.dependencies] certifi = ">=2017.4.17" -chardet = ">=3.0.2,<5" -idna = ">=2.5,<3" +charset-normalizer = {version = ">=2.0.0,<2.1.0", markers = "python_version >= \"3\""} +idna = {version = ">=2.5,<4", markers = "python_version >= \"3\""} urllib3 = ">=1.21.1,<1.27" [package.extras] -security = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)"] socks = ["PySocks (>=1.5.6,!=1.5.7)", "win-inet-pton"] +use_chardet_on_py3 = ["chardet (>=3.0.2,<5)"] [[package]] name = "responses" -version = "0.13.2" +version = "0.14.0" description = "A utility library for mocking out the `requests` Python library." category = "dev" optional = false @@ -1022,7 +1060,7 @@ six = "*" urllib3 = ">=1.25.10" [package.extras] -tests = ["coverage (>=3.7.1,<6.0.0)", "pytest-cov", "pytest-localserver", "flake8", "pytest (>=4.6,<5.0)", "pytest (>=4.6)", "mypy"] +tests = ["coverage (>=3.7.1,<6.0.0)", "pytest-cov", "pytest-localserver", "flake8", "types-mock", "types-requests", "types-six", "pytest (>=4.6,<5.0)", "pytest (>=4.6)", "mypy"] [[package]] name = "rsa" @@ -1037,18 +1075,21 @@ pyasn1 = ">=0.1.3" [[package]] name = "s3transfer" -version = "0.3.6" +version = "0.5.0" description = "An Amazon S3 Transfer Manager" category = "main" optional = false -python-versions = "*" +python-versions = ">= 3.6" [package.dependencies] botocore = ">=1.12.36,<2.0a.0" +[package.extras] +crt = ["botocore[crt] (>=1.20.29,<2.0a.0)"] + [[package]] name = "scikit-learn" -version = "0.24.1" +version = "0.24.2" description = "A set of python modules for machine learning and data mining" category = "main" optional = false @@ -1079,7 +1120,7 @@ numpy = ">=1.16.5" [[package]] name = "six" -version = "1.15.0" +version = "1.16.0" description = "Python 2 and 3 compatibility utilities" category = "main" optional = false @@ -1087,23 +1128,23 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*" [[package]] name = "slack-sdk" -version = "3.4.2" +version = "3.11.1" description = "The Slack API Platform SDK for Python" category = "main" optional = false python-versions = ">=3.6.0" [package.extras] -optional = ["aiodns (>1.0)", "aiohttp (>=3.7.3,<4)", "boto3 (<=2)", "SQLAlchemy (>=1,<2)", "websockets (>=8,<9)", "websocket-client (>=0.57)"] -testing = ["pytest (>=5.4,<6)", "pytest-asyncio (<1)", "Flask-Sockets (>=0.2,<1)", "pytest-cov (>=2,<3)", "codecov (>=2,<3)", "flake8 (>=3,<4)", "black (==20.8b1)", "psutil (>=5,<6)", "databases (>=0.3)"] +optional = ["aiodns (>1.0)", "aiohttp (>=3.7.3,<4)", "boto3 (<=2)", "SQLAlchemy (>=1,<2)", "websockets (>=9.1,<10)", "websocket-client (>=1,<2)"] +testing = ["pytest (>=5.4,<6)", "pytest-asyncio (<1)", "Flask-Sockets (>=0.2,<1)", "Flask (>=1,<2)", "Werkzeug (<2)", "pytest-cov (>=2,<3)", "codecov (>=2,<3)", "flake8 (>=3,<4)", "black (==21.9b0)", "psutil (>=5,<6)", "databases (>=0.3)", "boto3 (<=2)", "moto (<2)"] [[package]] name = "smart-open" -version = "5.0.0" +version = "5.2.1" description = "Utils for streaming large files (S3, HDFS, GCS, Azure Blob Storage, gzip, bz2...)" category = "main" optional = false -python-versions = ">=3.6.*" +python-versions = ">=3.6,<4.0" [package.extras] all = ["boto3", "google-cloud-storage", "azure-storage-blob", "azure-common", "azure-core", "requests"] @@ -1111,19 +1152,19 @@ azure = ["azure-storage-blob", "azure-common", "azure-core"] gcs = ["google-cloud-storage"] http = ["requests"] s3 = ["boto3"] -test = ["boto3", "google-cloud-storage", "azure-storage-blob", "azure-common", "azure-core", "requests", "mock", "moto[server] (==1.3.14)", "pathlib2", "responses", "paramiko", "parameterizedtestcase", "pytest", "pytest-rerunfailures"] +test = ["boto3", "google-cloud-storage", "azure-storage-blob", "azure-common", "azure-core", "requests", "moto[server] (==1.3.14)", "pathlib2", "responses", "paramiko", "parameterizedtestcase", "pytest", "pytest-rerunfailures"] webhdfs = ["requests"] [[package]] name = "sqlalchemy" -version = "1.4.5" +version = "1.4.23" description = "Database Abstraction Library" category = "main" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7" [package.dependencies] -greenlet = {version = "!=0.4.17", markers = "python_version >= \"3\""} +greenlet = {version = "!=0.4.17", markers = "python_version >= \"3\" and platform_machine in \"x86_64 X86_64 aarch64 AARCH64 ppc64le PPC64LE amd64 AMD64 win32 WIN32\""} importlib-metadata = {version = "*", markers = "python_version < \"3.8\""} [package.extras] @@ -1134,7 +1175,7 @@ mariadb_connector = ["mariadb (>=1.0.1)"] mssql = ["pyodbc"] mssql_pymssql = ["pymssql"] mssql_pyodbc = ["pyodbc"] -mypy = ["sqlalchemy2-stubs", "mypy (>=0.800)"] +mypy = ["sqlalchemy2-stubs", "mypy (>=0.910)"] mysql = ["mysqlclient (>=1.4.0,<2)", "mysqlclient (>=1.4.0)"] mysql_connector = ["mysqlconnector"] oracle = ["cx_oracle (>=7,<8)", "cx_oracle (>=7)"] @@ -1148,7 +1189,7 @@ sqlcipher = ["sqlcipher3-binary"] [[package]] name = "stevedore" -version = "3.3.0" +version = "3.4.0" description = "Manage dynamic plugins for Python applications" category = "main" optional = false @@ -1158,11 +1199,25 @@ python-versions = ">=3.6" importlib-metadata = {version = ">=1.7.0", markers = "python_version < \"3.8\""} pbr = ">=2.0.0,<2.1.0 || >2.1.0" +[[package]] +name = "tenacity" +version = "6.3.1" +description = "Retry code until it succeeds" +category = "main" +optional = false +python-versions = "*" + +[package.dependencies] +six = ">=1.9.0" + +[package.extras] +doc = ["reno", "sphinx", "tornado (>=4.5)"] + [[package]] name = "tensorboard" version = "1.15.0" description = "TensorBoard lets you watch Tensors Flow" -category = "main" +category = "dev" optional = false python-versions = ">= 2.7, != 3.0.*, != 3.1.*" @@ -1179,7 +1234,7 @@ werkzeug = ">=0.11.15" name = "tensorflow" version = "1.15.5" description = "TensorFlow is an open source machine learning framework for everyone." -category = "main" +category = "dev" optional = false python-versions = "*" @@ -1205,7 +1260,7 @@ wrapt = ">=1.11.1" name = "tensorflow-estimator" version = "1.15.1" description = "TensorFlow Estimator." -category = "main" +category = "dev" optional = false python-versions = "*" @@ -1213,13 +1268,13 @@ python-versions = "*" name = "termcolor" version = "1.1.0" description = "ANSII Color formatting for output in terminal." -category = "main" +category = "dev" optional = false python-versions = "*" [[package]] name = "testfixtures" -version = "6.17.1" +version = "6.18.1" description = "A collection of helpers and 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b/redshells/app/word_item_similarity/calculate_similarity_with_matrix_factorization.py index 47c44b0..3846f38 100644 --- a/redshells/app/word_item_similarity/calculate_similarity_with_matrix_factorization.py +++ b/redshells/app/word_item_similarity/calculate_similarity_with_matrix_factorization.py @@ -5,7 +5,6 @@ import luigi import numpy as np import pandas as pd -import tensorflow as tf from tqdm import tqdm import gokart @@ -13,10 +12,14 @@ logger = getLogger(__name__) +try: + import tensorflow as tf +except ImportError: + logger.warning('tensorflow is not installed. CalculateSimilarityWithMatrixFactorization require tensorflow') + class CalculateSimilarityWithMatrixFactorization(gokart.TaskOnKart): """Calculate similarity between items using latent factors which are calculated by Matrix Factorization. - """ task_namespace = 'redshells.word_item_similarity' target_item_task = gokart.TaskInstanceParameter(description='A task outputs item ids as type List.') diff --git a/redshells/model/__init__.py b/redshells/model/__init__.py index 8c7e036..e7994a0 100644 --- a/redshells/model/__init__.py +++ b/redshells/model/__init__.py @@ -5,4 +5,4 @@ from redshells.model.matrix_factorization_model import MatrixFactorizationGraph, MatrixFactorization from redshells.model.scdv import SCDV import redshells.model.utils -from redshells.model.tdidf import Tfidf +from redshells.model.tfidf import Tfidf diff --git a/redshells/model/early_stopping.py b/redshells/model/early_stopping.py index e92ae2c..e68a980 100644 --- a/redshells/model/early_stopping.py +++ b/redshells/model/early_stopping.py @@ -1,7 +1,13 @@ +from logging import getLogger import os import sys -import tensorflow as tf +logger = getLogger(__name__) + +try: + import tensorflow as tf +except ImportError: + logger.warning('tensorflow is not installed. EarlyStopping require tensorflow') class EarlyStopping(object): diff --git a/redshells/model/factorization_machine.py b/redshells/model/factorization_machine.py index 759aaf7..256be60 100644 --- a/redshells/model/factorization_machine.py +++ b/redshells/model/factorization_machine.py @@ -5,13 +5,17 @@ import numpy as np import pandas as pd import sklearn -import tensorflow as tf import redshells from redshells.model.early_stopping import EarlyStopping logger = getLogger(__name__) +try: + import tensorflow as tf +except ImportError: + logger.warning('tensorflow is not installed. CalculateSimilarityWithMatrixFactorization require tensorflow') + class FactorizationMachineGraph(object): def __init__(self, input_size: int, feature_kind_size: int, embedding_size: int, l2_weight: float, learning_rate: float, scope_name: str = '') -> None: diff --git a/redshells/model/feature_aggregation_similarity_model.py b/redshells/model/feature_aggregation_similarity_model.py index a46963a..8c2806e 100644 --- a/redshells/model/feature_aggregation_similarity_model.py +++ b/redshells/model/feature_aggregation_similarity_model.py @@ -6,6 +6,12 @@ logger = getLogger(__name__) +try: + import tensorflow as tf + import tensorflow.keras.layers as layers +except ImportError: + logger.warning('tensorflow is not installed. FeatureAggregationSimilarityModel require tensorflow') + class FeatureAggregationSimilarityDataset(tf.keras.utils.Sequence): def __init__(self, diff --git a/redshells/model/graph_convolutional_matrix_completion.py b/redshells/model/graph_convolutional_matrix_completion.py index 8e1998e..3e74169 100644 --- a/redshells/model/graph_convolutional_matrix_completion.py +++ b/redshells/model/graph_convolutional_matrix_completion.py @@ -6,7 +6,6 @@ import numpy as np import pandas as pd import scipy.sparse as sp -import tensorflow as tf import redshells from redshells.model.early_stopping import EarlyStopping @@ -14,6 +13,11 @@ logger = getLogger(__name__) +try: + import tensorflow as tf +except ImportError: + logger.warning('tensorflow is not installed. GraphConvolutionalMatrixCompletion require tensorflow') + def _make_weight_variable(shape, name: str = None): init_range = np.sqrt(10.0 / sum(shape)) diff --git a/redshells/model/matrix_factorization_model.py b/redshells/model/matrix_factorization_model.py index 80e13b4..9a6d910 100644 --- a/redshells/model/matrix_factorization_model.py +++ b/redshells/model/matrix_factorization_model.py @@ -3,13 +3,17 @@ import numpy as np import sklearn -import tensorflow as tf import redshells from redshells.model.early_stopping import EarlyStopping logger = getLogger(__name__) +try: + import tensorflow as tf +except ImportError: + logger.warning('tensorflow is not installed. MatrixFactorization require tensorflow') + class MatrixFactorizationGraph(object): def __init__(self, n_items: int, n_users: int, n_latent_factors: int, n_services: int, reg_item: float, reg_user: float, scope_name: str, diff --git a/redshells/model/tdidf.py b/redshells/model/tfidf.py similarity index 100% rename from redshells/model/tdidf.py rename to redshells/model/tfidf.py diff --git a/redshells/model/utils.py b/redshells/model/utils.py index 0fc8428..8db3b0f 100644 --- a/redshells/model/utils.py +++ b/redshells/model/utils.py @@ -2,12 +2,16 @@ from logging import getLogger import sklearn -import tensorflow as tf from gokart.file_processor import PickleFileProcessor logger = getLogger(__name__) +try: + import tensorflow as tf +except ImportError: + logger.warning('tensorflow is not installed. save_tf_session require tensorflow') + def calculate_auc(y_true, y_score, pos_label=1): fpr, tpr, thresholds = sklearn.metrics.roc_curve(y_true, y_score, pos_label=pos_label) diff --git a/redshells/train/train_graph_convolutional_matrix_completion.py b/redshells/train/train_graph_convolutional_matrix_completion.py index cc07aad..c953d9b 100644 --- a/redshells/train/train_graph_convolutional_matrix_completion.py +++ b/redshells/train/train_graph_convolutional_matrix_completion.py @@ -1,13 +1,20 @@ +from logging import getLogger from typing import Any, Dict import luigi import sklearn -import tensorflow as tf import gokart from redshells.model.gcmc_dataset import GcmcDataset, GcmcGraphDataset from redshells.model.graph_convolutional_matrix_completion import GraphConvolutionalMatrixCompletion +logger = getLogger(__name__) + +try: + import tensorflow as tf +except ImportError: + logger.warning('tensorflow is not installed. TrainGraphConvolutionalMatrixCompletion require tensorflow') + class NoneTask(gokart.TaskOnKart): task_namespace = 'redshells' diff --git a/redshells/train/train_matrix_factorization.py b/redshells/train/train_matrix_factorization.py index 5dea102..4fb58af 100644 --- a/redshells/train/train_matrix_factorization.py +++ b/redshells/train/train_matrix_factorization.py @@ -1,13 +1,19 @@ -from typing import Any -from typing import Dict +from logging import getLogger +from typing import Any, Dict import luigi import sklearn -import tensorflow as tf import gokart from redshells.model import MatrixFactorization +logger = getLogger(__name__) + +try: + import tensorflow as tf +except ImportError: + logger.warning('tensorflow is not installed. TrainMatrixFactorization require tensorflow') + class TrainMatrixFactorization(gokart.TaskOnKart): task_namespace = 'redshells' diff --git a/yapf.ini b/yapf.ini deleted file mode 100644 index a88097b..0000000 --- a/yapf.ini +++ /dev/null @@ -1,3 +0,0 @@ -[style] -based_on_style = pep8 -column_limit = 160 From 412d8306b240238d502163aacf6d0777abc6d8fb Mon Sep 17 00:00:00 2001 From: hirosassa Date: Sat, 18 Sep 2021 14:07:03 +0900 Subject: [PATCH 2/8] fix ci --- .github/workflows/format.yml | 10 ++++++---- 1 file changed, 6 insertions(+), 4 deletions(-) diff --git a/.github/workflows/format.yml b/.github/workflows/format.yml index 02006b6..298401a 100644 --- a/.github/workflows/format.yml +++ b/.github/workflows/format.yml @@ -4,7 +4,7 @@ on: push: branches: [ master ] pull_request: - branches: [ master ] + jobs: formatting-check: @@ -14,7 +14,9 @@ jobs: steps: - uses: actions/checkout@v2 + - name: Install dependencies + run: | + pip install toml yapf - name: run YAPF to test if python code is correctly formatted - uses: AlexanderMelde/yapf-action@master - with: - args: --verbose --style=yapf.ini + run: | + yapf --diff --recursive --verbose $GITHUB_WORKSPACE From a51475ec2b9849b8ed6244b40e6d248e9fb50eaf Mon Sep 17 00:00:00 2001 From: hirosassa Date: Sun, 19 Sep 2021 09:06:08 +0900 Subject: [PATCH 3/8] divide directory --- redshells/app/__init__.py | 1 + .../app/word_item_similarity/__init__.py | 1 - redshells/contrib/__init__.py | 0 redshells/contrib/app/__init__.py | 0 .../app/word_item_similarity/__init__.py | 0 ...te_similarity_with_matrix_factorization.py | 0 redshells/contrib/model/__init__.py | 5 +++ .../{ => contrib}/model/early_stopping.py | 0 .../model/factorization_machine.py | 2 +- redshells/{ => contrib}/model/gcmc_dataset.py | 0 .../graph_convolutional_matrix_completion.py | 4 +-- .../model/matrix_factorization_model.py | 2 +- redshells/contrib/model/utils.py | 31 +++++++++++++++++++ redshells/contrib/train/__init__.py | 3 ++ ...n_graph_convolutional_matrix_completion.py | 4 +-- .../train/train_matrix_factorization.py | 2 +- redshells/model/__init__.py | 5 +-- redshells/model/utils.py | 29 ----------------- redshells/train/__init__.py | 2 -- test/contrib/__init__.py | 0 test/contrib/model/__init__.py | 0 .../model/test_gcmc_graph_dataset.py | 2 +- .../model/test_gcmc_graph_dataset_map.py | 2 +- test/{ => contrib}/model/test_gcmc_id_map.py | 2 +- ...t_graph_convolutional_matrix_completion.py | 6 ++-- test/contrib/train/__init__.py | 0 test/{ => contrib}/train/test_gcmc_dataset.py | 4 +-- 27 files changed, 56 insertions(+), 51 deletions(-) create mode 100644 redshells/contrib/__init__.py create mode 100644 redshells/contrib/app/__init__.py create mode 100644 redshells/contrib/app/word_item_similarity/__init__.py rename redshells/{ => contrib}/app/word_item_similarity/calculate_similarity_with_matrix_factorization.py (100%) create mode 100644 redshells/contrib/model/__init__.py rename redshells/{ => contrib}/model/early_stopping.py (100%) rename redshells/{ => contrib}/model/factorization_machine.py (99%) rename redshells/{ => contrib}/model/gcmc_dataset.py (100%) rename redshells/{ => contrib}/model/graph_convolutional_matrix_completion.py (99%) rename redshells/{ => contrib}/model/matrix_factorization_model.py (99%) create mode 100644 redshells/contrib/model/utils.py create mode 100644 redshells/contrib/train/__init__.py rename redshells/{ => contrib}/train/train_graph_convolutional_matrix_completion.py (95%) rename redshells/{ => contrib}/train/train_matrix_factorization.py (97%) create mode 100644 test/contrib/__init__.py create mode 100644 test/contrib/model/__init__.py rename test/{ => contrib}/model/test_gcmc_graph_dataset.py (93%) rename test/{ => contrib}/model/test_gcmc_graph_dataset_map.py (94%) rename test/{ => contrib}/model/test_gcmc_id_map.py (96%) rename test/{ => contrib}/model/test_graph_convolutional_matrix_completion.py (97%) create mode 100644 test/contrib/train/__init__.py rename test/{ => contrib}/train/test_gcmc_dataset.py (95%) diff --git a/redshells/app/__init__.py b/redshells/app/__init__.py index e69de29..49c160d 100644 --- a/redshells/app/__init__.py +++ b/redshells/app/__init__.py @@ -0,0 +1 @@ +from redshells.contrib.app.word_item_similarity.calculate_similarity_with_matrix_factorization import CalculateSimilarityWithMatrixFactorization diff --git a/redshells/app/word_item_similarity/__init__.py b/redshells/app/word_item_similarity/__init__.py index 175ef1e..0bfa385 100644 --- a/redshells/app/word_item_similarity/__init__.py +++ b/redshells/app/word_item_similarity/__init__.py @@ -1,5 +1,4 @@ from redshells.app.word_item_similarity.calculate_document_embedding import CalculateDocumentEmbedding -from redshells.app.word_item_similarity.calculate_similarity_with_matrix_factorization import CalculateSimilarityWithMatrixFactorization from redshells.app.word_item_similarity.calculate_word_embedding import CalculateWordEmbedding, CalculateWordEmbeddingWithSCDV from redshells.app.word_item_similarity.calculate_word_item_similarity import CalculateWordItemSimilarity from redshells.app.word_item_similarity.dimension_reduction_model import TrainDimensionReductionModel, ApplyDimensionReductionModel diff --git a/redshells/contrib/__init__.py b/redshells/contrib/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/redshells/contrib/app/__init__.py b/redshells/contrib/app/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/redshells/contrib/app/word_item_similarity/__init__.py b/redshells/contrib/app/word_item_similarity/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/redshells/app/word_item_similarity/calculate_similarity_with_matrix_factorization.py b/redshells/contrib/app/word_item_similarity/calculate_similarity_with_matrix_factorization.py similarity index 100% rename from redshells/app/word_item_similarity/calculate_similarity_with_matrix_factorization.py rename to redshells/contrib/app/word_item_similarity/calculate_similarity_with_matrix_factorization.py diff --git a/redshells/contrib/model/__init__.py b/redshells/contrib/model/__init__.py new file mode 100644 index 0000000..30df39d --- /dev/null +++ b/redshells/contrib/model/__init__.py @@ -0,0 +1,5 @@ +from redshells.contrib.model.factorization_machine import FactorizationMachineGraph, FactorizationMachine +from redshells.contrib.model.graph_convolutional_matrix_completion import GraphConvolutionalMatrixCompletion +from redshells.contrib.model.matrix_factorization_model import MatrixFactorizationGraph, MatrixFactorization +import redshells.model.utils +import redshells.contrib.model.utils diff --git a/redshells/model/early_stopping.py b/redshells/contrib/model/early_stopping.py similarity index 100% rename from redshells/model/early_stopping.py rename to redshells/contrib/model/early_stopping.py diff --git a/redshells/model/factorization_machine.py b/redshells/contrib/model/factorization_machine.py similarity index 99% rename from redshells/model/factorization_machine.py rename to redshells/contrib/model/factorization_machine.py index 256be60..53458bb 100644 --- a/redshells/model/factorization_machine.py +++ b/redshells/contrib/model/factorization_machine.py @@ -7,7 +7,7 @@ import sklearn import redshells -from redshells.model.early_stopping import EarlyStopping +from redshells.contrib.model.early_stopping import EarlyStopping logger = getLogger(__name__) diff --git a/redshells/model/gcmc_dataset.py b/redshells/contrib/model/gcmc_dataset.py similarity index 100% rename from redshells/model/gcmc_dataset.py rename to redshells/contrib/model/gcmc_dataset.py diff --git a/redshells/model/graph_convolutional_matrix_completion.py b/redshells/contrib/model/graph_convolutional_matrix_completion.py similarity index 99% rename from redshells/model/graph_convolutional_matrix_completion.py rename to redshells/contrib/model/graph_convolutional_matrix_completion.py index 3e74169..067ca5e 100644 --- a/redshells/model/graph_convolutional_matrix_completion.py +++ b/redshells/contrib/model/graph_convolutional_matrix_completion.py @@ -8,8 +8,8 @@ import scipy.sparse as sp import redshells -from redshells.model.early_stopping import EarlyStopping -from redshells.model.gcmc_dataset import GcmcGraphDataset, GcmcDataset +from redshells.contrib.model.early_stopping import EarlyStopping +from redshells.contrib.model.gcmc_dataset import GcmcGraphDataset, GcmcDataset logger = getLogger(__name__) diff --git a/redshells/model/matrix_factorization_model.py b/redshells/contrib/model/matrix_factorization_model.py similarity index 99% rename from redshells/model/matrix_factorization_model.py rename to redshells/contrib/model/matrix_factorization_model.py index 9a6d910..82b2af7 100644 --- a/redshells/model/matrix_factorization_model.py +++ b/redshells/contrib/model/matrix_factorization_model.py @@ -5,7 +5,7 @@ import sklearn import redshells -from redshells.model.early_stopping import EarlyStopping +from redshells.contrib.model.early_stopping import EarlyStopping logger = getLogger(__name__) diff --git a/redshells/contrib/model/utils.py b/redshells/contrib/model/utils.py new file mode 100644 index 0000000..afd0af0 --- /dev/null +++ b/redshells/contrib/model/utils.py @@ -0,0 +1,31 @@ +from logging import getLogger + +from gokart.file_processor import PickleFileProcessor + +logger = getLogger(__name__) + +try: + import tensorflow as tf +except ImportError: + logger.warning('tensorflow is not installed. save_tf_session require tensorflow') + + +def _get_config(obj): + var_names = obj.__init__.__code__.co_varnames[:obj.__init__.__code__.co_argcount] + args = {v: obj.__dict__[v] for v in var_names if v != 'self'} + return args + + +def save_tf_session(obj, session: tf.Session, file_path: str): + tf.train.Saver().save(sess=session, save_path=file_path) + with open(file_path, 'wb') as f: + PickleFileProcessor().dump(_get_config(obj), f) + + +def load_tf_session(cls, session: tf.Session, file_path: str, make_graph): + with open(file_path, 'rb') as f: + model = cls(**PickleFileProcessor().load(f)) + model.graph = make_graph(model) + tf.train.Saver().restore(sess=session, save_path=file_path) + model.session = session + return model diff --git a/redshells/contrib/train/__init__.py b/redshells/contrib/train/__init__.py new file mode 100644 index 0000000..59c1eba --- /dev/null +++ b/redshells/contrib/train/__init__.py @@ -0,0 +1,3 @@ +from redshells.contrib.train.train_graph_convolutional_matrix_completion import TrainGraphConvolutionalMatrixCompletion +from redshells.contrib.train.train_matrix_factorization import TrainMatrixFactorization +import redshells.train.utils diff --git a/redshells/train/train_graph_convolutional_matrix_completion.py b/redshells/contrib/train/train_graph_convolutional_matrix_completion.py similarity index 95% rename from redshells/train/train_graph_convolutional_matrix_completion.py rename to redshells/contrib/train/train_graph_convolutional_matrix_completion.py index c953d9b..a906e18 100644 --- a/redshells/train/train_graph_convolutional_matrix_completion.py +++ b/redshells/contrib/train/train_graph_convolutional_matrix_completion.py @@ -5,8 +5,8 @@ import sklearn import gokart -from redshells.model.gcmc_dataset import GcmcDataset, GcmcGraphDataset -from redshells.model.graph_convolutional_matrix_completion import GraphConvolutionalMatrixCompletion +from redshells.model.contrib.gcmc_dataset import GcmcDataset, GcmcGraphDataset +from redshells.model.contrib.graph_convolutional_matrix_completion import GraphConvolutionalMatrixCompletion logger = getLogger(__name__) diff --git a/redshells/train/train_matrix_factorization.py b/redshells/contrib/train/train_matrix_factorization.py similarity index 97% rename from redshells/train/train_matrix_factorization.py rename to redshells/contrib/train/train_matrix_factorization.py index 4fb58af..20e8951 100644 --- a/redshells/train/train_matrix_factorization.py +++ b/redshells/contrib/train/train_matrix_factorization.py @@ -5,7 +5,7 @@ import sklearn import gokart -from redshells.model import MatrixFactorization +from redshells.contrib.model import MatrixFactorization logger = getLogger(__name__) diff --git a/redshells/model/__init__.py b/redshells/model/__init__.py index e7994a0..1bb00fa 100644 --- a/redshells/model/__init__.py +++ b/redshells/model/__init__.py @@ -1,8 +1,5 @@ -from redshells.model.factorization_machine import FactorizationMachineGraph, FactorizationMachine from redshells.model.feature_aggregation_similarity_model import FeatureAggregationSimilarityModel -from redshells.model.graph_convolutional_matrix_completion import GraphConvolutionalMatrixCompletion from redshells.model.lda_model import LdaModel -from redshells.model.matrix_factorization_model import MatrixFactorizationGraph, MatrixFactorization from redshells.model.scdv import SCDV -import redshells.model.utils from redshells.model.tfidf import Tfidf +import redshells.model.utils diff --git a/redshells/model/utils.py b/redshells/model/utils.py index 8db3b0f..acf8a98 100644 --- a/redshells/model/utils.py +++ b/redshells/model/utils.py @@ -1,39 +1,10 @@ -import pickle from logging import getLogger import sklearn -from gokart.file_processor import PickleFileProcessor - logger = getLogger(__name__) -try: - import tensorflow as tf -except ImportError: - logger.warning('tensorflow is not installed. save_tf_session require tensorflow') - def calculate_auc(y_true, y_score, pos_label=1): fpr, tpr, thresholds = sklearn.metrics.roc_curve(y_true, y_score, pos_label=pos_label) return sklearn.metrics.auc(fpr, tpr) - - -def _get_config(obj): - var_names = obj.__init__.__code__.co_varnames[:obj.__init__.__code__.co_argcount] - args = {v: obj.__dict__[v] for v in var_names if v != 'self'} - return args - - -def save_tf_session(obj, session: tf.Session, file_path: str): - tf.train.Saver().save(sess=session, save_path=file_path) - with open(file_path, 'wb') as f: - PickleFileProcessor().dump(_get_config(obj), f) - - -def load_tf_session(cls, session: tf.Session, file_path: str, make_graph): - with open(file_path, 'rb') as f: - model = cls(**PickleFileProcessor().load(f)) - model.graph = make_graph(model) - tf.train.Saver().restore(sess=session, save_path=file_path) - model.session = session - return model diff --git a/redshells/train/__init__.py b/redshells/train/__init__.py index c3d7039..b5a4289 100644 --- a/redshells/train/__init__.py +++ b/redshells/train/__init__.py @@ -6,9 +6,7 @@ from redshells.train.train_factorization_machine import TrainFactorizationMachine from redshells.train.train_fasttext import TrainFastText from redshells.train.train_feature_aggregation_similarity_model import TrainFeatureAggregationSimilarityModel -from redshells.train.train_graph_convolutional_matrix_completion import TrainGraphConvolutionalMatrixCompletion from redshells.train.train_lda_model import TrainLdaModel -from redshells.train.train_matrix_factorization import TrainMatrixFactorization from redshells.train.train_pairwise_similarity_model import TrainPairwiseSimilarityModel from redshells.train.train_tfidf import TrainTfidf from redshells.train.train_word2vec import TrainWord2Vec diff --git a/test/contrib/__init__.py b/test/contrib/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/test/contrib/model/__init__.py b/test/contrib/model/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/test/model/test_gcmc_graph_dataset.py b/test/contrib/model/test_gcmc_graph_dataset.py similarity index 93% rename from test/model/test_gcmc_graph_dataset.py rename to test/contrib/model/test_gcmc_graph_dataset.py index 8c97f2f..0b5dd1b 100644 --- a/test/model/test_gcmc_graph_dataset.py +++ b/test/contrib/model/test_gcmc_graph_dataset.py @@ -3,7 +3,7 @@ import numpy as np import scipy.sparse as sp -from redshells.model.gcmc_dataset import GcmcDataset, GcmcGraphDataset +from redshells.contrib.model.gcmc_dataset import GcmcDataset, GcmcGraphDataset def _make_sparse_matrix(n, m, n_values): diff --git a/test/model/test_gcmc_graph_dataset_map.py b/test/contrib/model/test_gcmc_graph_dataset_map.py similarity index 94% rename from test/model/test_gcmc_graph_dataset_map.py rename to test/contrib/model/test_gcmc_graph_dataset_map.py index 9b45fc6..4359858 100644 --- a/test/model/test_gcmc_graph_dataset_map.py +++ b/test/contrib/model/test_gcmc_graph_dataset_map.py @@ -3,7 +3,7 @@ import numpy as np -from redshells.model.gcmc_dataset import GcmcGraphDataset, GcmcDataset +from redshells.contrib.model.gcmc_dataset import GcmcGraphDataset, GcmcDataset logger = getLogger(__name__) diff --git a/test/model/test_gcmc_id_map.py b/test/contrib/model/test_gcmc_id_map.py similarity index 96% rename from test/model/test_gcmc_id_map.py rename to test/contrib/model/test_gcmc_id_map.py index 9be7b01..e91d0ac 100644 --- a/test/model/test_gcmc_id_map.py +++ b/test/contrib/model/test_gcmc_id_map.py @@ -1,7 +1,7 @@ import unittest from logging import getLogger import numpy as np -from redshells.model.gcmc_dataset import GcmcIdMap +from redshells.contrib.model.gcmc_dataset import GcmcIdMap logger = getLogger(__name__) diff --git a/test/model/test_graph_convolutional_matrix_completion.py b/test/contrib/model/test_graph_convolutional_matrix_completion.py similarity index 97% rename from test/model/test_graph_convolutional_matrix_completion.py rename to test/contrib/model/test_graph_convolutional_matrix_completion.py index 252af08..c5d957f 100644 --- a/test/model/test_graph_convolutional_matrix_completion.py +++ b/test/contrib/model/test_graph_convolutional_matrix_completion.py @@ -4,8 +4,8 @@ import scipy.sparse as sp from unittest.mock import patch -from redshells.model import GraphConvolutionalMatrixCompletion -from redshells.model.gcmc_dataset import GcmcDataset, GcmcGraphDataset +from redshells.contrib.model import GraphConvolutionalMatrixCompletion +from redshells.contrib.model.gcmc_dataset import GcmcDataset, GcmcGraphDataset def _make_sparse_matrix(n, m, n_values): @@ -81,7 +81,7 @@ def test_item_cold_start(self): self.assertIsNotNone(results[0]) self.assertIsNotNone(results[1]) - @patch('redshells.model.GraphConvolutionalMatrixCompletion.get_user_feature') + @patch('redshells.contrib.model.GraphConvolutionalMatrixCompletion.get_user_feature') def test_get_user_feature_with_new_items(self, dummy_get_user_feature): n_users = 10 n_items = 20 diff --git a/test/contrib/train/__init__.py b/test/contrib/train/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/test/train/test_gcmc_dataset.py b/test/contrib/train/test_gcmc_dataset.py similarity index 95% rename from test/train/test_gcmc_dataset.py rename to test/contrib/train/test_gcmc_dataset.py index eed7653..576a0c3 100644 --- a/test/train/test_gcmc_dataset.py +++ b/test/contrib/train/test_gcmc_dataset.py @@ -3,8 +3,8 @@ import numpy as np -from redshells.model.gcmc_dataset import GcmcDataset -from redshells.model.graph_convolutional_matrix_completion import GcmcGraphDataset +from redshells.contrib.model.gcmc_dataset import GcmcDataset +from redshells.contrib.model.graph_convolutional_matrix_completion import GcmcGraphDataset logger = getLogger(__name__) From aabe54c62124dfbf43d008f082a6f82aaa521ce3 Mon Sep 17 00:00:00 2001 From: hirosassa Date: Sun, 19 Sep 2021 09:41:38 +0900 Subject: [PATCH 4/8] fix --- README.md | 5 ++--- redshells/contrib/model/__init__.py | 1 + .../model/feature_aggregation_similarity_model.py | 0 redshells/model/__init__.py | 1 - 4 files changed, 3 insertions(+), 4 deletions(-) rename redshells/{ => contrib}/model/feature_aggregation_similarity_model.py (100%) diff --git a/README.md b/README.md index 0816910..1be30d0 100644 --- a/README.md +++ b/README.md @@ -9,6 +9,5 @@ Machine learning tasks which are used with data pipeline library "luigi" and its ## Dependencies -You should install `tensorflow = ">=1.13.1,<2.0"` manually if you would like to use some models. -`Tensorflow` is not included redshells' dependencies because there are models not used it. -For more details, see `redshells/model` directory. +You should install `tensorflow = ">=1.13.1,<2.0"` manually if you would like to use some models under `redshells/contrib` directory. +`Tensorflow` is not included redshells' dependencies because there are some models not used it. diff --git a/redshells/contrib/model/__init__.py b/redshells/contrib/model/__init__.py index 30df39d..8d02d31 100644 --- a/redshells/contrib/model/__init__.py +++ b/redshells/contrib/model/__init__.py @@ -1,4 +1,5 @@ from redshells.contrib.model.factorization_machine import FactorizationMachineGraph, FactorizationMachine +from redshells.contrib.model.feature_aggregation_similarity_model import FeatureAggregationSimilarityModel from redshells.contrib.model.graph_convolutional_matrix_completion import GraphConvolutionalMatrixCompletion from redshells.contrib.model.matrix_factorization_model import MatrixFactorizationGraph, MatrixFactorization import redshells.model.utils diff --git a/redshells/model/feature_aggregation_similarity_model.py b/redshells/contrib/model/feature_aggregation_similarity_model.py similarity index 100% rename from redshells/model/feature_aggregation_similarity_model.py rename to redshells/contrib/model/feature_aggregation_similarity_model.py diff --git a/redshells/model/__init__.py b/redshells/model/__init__.py index 1bb00fa..854af89 100644 --- a/redshells/model/__init__.py +++ b/redshells/model/__init__.py @@ -1,4 +1,3 @@ -from redshells.model.feature_aggregation_similarity_model import FeatureAggregationSimilarityModel from redshells.model.lda_model import LdaModel from redshells.model.scdv import SCDV from redshells.model.tfidf import Tfidf From a4bf46e3971d39ddacef0f0065567e18a7830db5 Mon Sep 17 00:00:00 2001 From: hirosassa Date: Sun, 19 Sep 2021 10:17:24 +0900 Subject: [PATCH 5/8] divide directory --- redshells/contrib/train/__init__.py | 1 + .../train/train_feature_aggregation_similarity_model.py | 4 ++-- .../train/train_graph_convolutional_matrix_completion.py | 4 ++-- redshells/train/__init__.py | 1 - redshells/train/train_fasttext.py | 4 ++-- .../model/test_feature_aggregation_similarity_model.py | 4 ++-- .../test_train_feature_aggregation_similarity_model.py | 6 +++--- 7 files changed, 12 insertions(+), 12 deletions(-) rename redshells/{ => contrib}/train/train_feature_aggregation_similarity_model.py (92%) rename test/{ => contrib}/model/test_feature_aggregation_similarity_model.py (90%) rename test/{ => contrib}/train/test_train_feature_aggregation_similarity_model.py (89%) diff --git a/redshells/contrib/train/__init__.py b/redshells/contrib/train/__init__.py index 59c1eba..fbc11e2 100644 --- a/redshells/contrib/train/__init__.py +++ b/redshells/contrib/train/__init__.py @@ -1,3 +1,4 @@ +from redshells.contrib.train.train_feature_aggregation_similarity_model import TrainFeatureAggregationSimilarityModel from redshells.contrib.train.train_graph_convolutional_matrix_completion import TrainGraphConvolutionalMatrixCompletion from redshells.contrib.train.train_matrix_factorization import TrainMatrixFactorization import redshells.train.utils diff --git a/redshells/train/train_feature_aggregation_similarity_model.py b/redshells/contrib/train/train_feature_aggregation_similarity_model.py similarity index 92% rename from redshells/train/train_feature_aggregation_similarity_model.py rename to redshells/contrib/train/train_feature_aggregation_similarity_model.py index 012289d..8861a93 100644 --- a/redshells/train/train_feature_aggregation_similarity_model.py +++ b/redshells/contrib/train/train_feature_aggregation_similarity_model.py @@ -5,8 +5,8 @@ import gokart -from redshells.model import FeatureAggregationSimilarityModel -from redshells.model.feature_aggregation_similarity_model import FeatureAggregationSimilarityDataset +from redshells.contrib.model import FeatureAggregationSimilarityModel +from redshells.contrib.model.feature_aggregation_similarity_model import FeatureAggregationSimilarityDataset logger = getLogger(__name__) diff --git a/redshells/contrib/train/train_graph_convolutional_matrix_completion.py b/redshells/contrib/train/train_graph_convolutional_matrix_completion.py index a906e18..00389c9 100644 --- a/redshells/contrib/train/train_graph_convolutional_matrix_completion.py +++ b/redshells/contrib/train/train_graph_convolutional_matrix_completion.py @@ -5,8 +5,8 @@ import sklearn import gokart -from redshells.model.contrib.gcmc_dataset import GcmcDataset, GcmcGraphDataset -from redshells.model.contrib.graph_convolutional_matrix_completion import GraphConvolutionalMatrixCompletion +from redshells.contrib.model.gcmc_dataset import GcmcDataset, GcmcGraphDataset +from redshells.contrib.model.graph_convolutional_matrix_completion import GraphConvolutionalMatrixCompletion logger = getLogger(__name__) diff --git a/redshells/train/__init__.py b/redshells/train/__init__.py index b5a4289..20c1b08 100644 --- a/redshells/train/__init__.py +++ b/redshells/train/__init__.py @@ -5,7 +5,6 @@ from redshells.train.train_doc2vec import TrainDoc2Vec from redshells.train.train_factorization_machine import TrainFactorizationMachine from redshells.train.train_fasttext import TrainFastText -from redshells.train.train_feature_aggregation_similarity_model import TrainFeatureAggregationSimilarityModel from redshells.train.train_lda_model import TrainLdaModel from redshells.train.train_pairwise_similarity_model import TrainPairwiseSimilarityModel from redshells.train.train_tfidf import TrainTfidf diff --git a/redshells/train/train_fasttext.py b/redshells/train/train_fasttext.py index c54a729..f52efe8 100644 --- a/redshells/train/train_fasttext.py +++ b/redshells/train/train_fasttext.py @@ -6,7 +6,7 @@ import luigi import gokart -import redshells +from redshells.train.utils import TokenIterator logger = getLogger(__name__) @@ -31,7 +31,7 @@ def run(self): shuffle(texts) if isinstance(texts[0], str): - texts = redshells.train.utils.TokenIterator(texts=texts) + texts = TokenIterator(texts=texts) logger.info(f'training FastText...') model = gensim.models.FastText(sentences=texts, **self.fasttext_kwargs) diff --git a/test/model/test_feature_aggregation_similarity_model.py b/test/contrib/model/test_feature_aggregation_similarity_model.py similarity index 90% rename from test/model/test_feature_aggregation_similarity_model.py rename to test/contrib/model/test_feature_aggregation_similarity_model.py index dfe55c2..6d438fc 100644 --- a/test/model/test_feature_aggregation_similarity_model.py +++ b/test/contrib/model/test_feature_aggregation_similarity_model.py @@ -3,8 +3,8 @@ import numpy as np -from redshells.model import FeatureAggregationSimilarityModel -from redshells.model.feature_aggregation_similarity_model import FeatureAggregationSimilarityDataset +from redshells.contrib.model import FeatureAggregationSimilarityModel +from redshells.contrib.model.feature_aggregation_similarity_model import FeatureAggregationSimilarityDataset logger = getLogger(__name__) diff --git a/test/train/test_train_feature_aggregation_similarity_model.py b/test/contrib/train/test_train_feature_aggregation_similarity_model.py similarity index 89% rename from test/train/test_train_feature_aggregation_similarity_model.py rename to test/contrib/train/test_train_feature_aggregation_similarity_model.py index 44cbee2..69e0408 100644 --- a/test/train/test_train_feature_aggregation_similarity_model.py +++ b/test/contrib/train/test_train_feature_aggregation_similarity_model.py @@ -6,9 +6,9 @@ import gokart -from redshells.model import FeatureAggregationSimilarityModel -from redshells.model.feature_aggregation_similarity_model import FeatureAggregationSimilarityDataset -from redshells.train import TrainFeatureAggregationSimilarityModel +from redshells.contrib.model import FeatureAggregationSimilarityModel +from redshells.contrib.model.feature_aggregation_similarity_model import FeatureAggregationSimilarityDataset +from redshells.contrib.train import TrainFeatureAggregationSimilarityModel logger = getLogger(__name__) From c3a8b0df72790b3a5cba002836040074952b6ce6 Mon Sep 17 00:00:00 2001 From: hirosassa Date: Mon, 20 Sep 2021 11:31:17 +0900 Subject: [PATCH 6/8] fix readme --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 1be30d0..f1812ea 100644 --- a/README.md +++ b/README.md @@ -9,5 +9,5 @@ Machine learning tasks which are used with data pipeline library "luigi" and its ## Dependencies -You should install `tensorflow = ">=1.13.1,<2.0"` manually if you would like to use some models under `redshells/contrib` directory. +You should add `tensorflow = ">=1.13.1,<2.0"` on your app dependencies if you would like to use some models under `redshells/contrib` directory. `Tensorflow` is not included redshells' dependencies because there are some models not used it. From c985cdfc09057871d535d7424cbea1353a16ce6d Mon Sep 17 00:00:00 2001 From: hirosassa Date: Wed, 22 Sep 2021 05:53:28 +0900 Subject: [PATCH 7/8] fix import --- redshells/app/__init__.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/redshells/app/__init__.py b/redshells/app/__init__.py index 49c160d..6d24da7 100644 --- a/redshells/app/__init__.py +++ b/redshells/app/__init__.py @@ -1 +1 @@ -from redshells.contrib.app.word_item_similarity.calculate_similarity_with_matrix_factorization import CalculateSimilarityWithMatrixFactorization +import redshells.contrib.app.word_item_similarity.calculate_similarity_with_matrix_factorization From 723a7f34b0478a85ac49eb95fc337818b105b148 Mon Sep 17 00:00:00 2001 From: hirosassa Date: Sun, 26 Sep 2021 09:49:16 +0900 Subject: [PATCH 8/8] remove unecessary import --- redshells/app/__init__.py | 1 - 1 file changed, 1 deletion(-) diff --git a/redshells/app/__init__.py b/redshells/app/__init__.py index 6d24da7..e69de29 100644 --- a/redshells/app/__init__.py +++ b/redshells/app/__init__.py @@ -1 +0,0 @@ -import redshells.contrib.app.word_item_similarity.calculate_similarity_with_matrix_factorization